EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000012769 (Gene tree)
Gene ID: 105026827
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 13564 bases
Position: chrLG04:16187608-16201171
Accession: 105026827
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000034241	RNA_pol_Rpb1_5	PF04998.17	3.7e-97	1	1
ENSELUP00000034241	RNA_pol_Rpb1_4	PF05000.17	6.3e-23	1	1
ENSELUP00000034241	RNA_pol_Rpb1_2	PF00623.20	3.7e-69	1	1
ENSELUP00000034241	RNA_pol_Rpb1_3	PF04983.18	2.9e-36	1	1
ENSELUP00000034241	RNA_pol_Rpb1_1	PF04997.12	1e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000020818	-	5169	XM_010898571	ENSELUP00000034241	1722 (aa)	XP_010896873	UPI0005760979

Gene Model

Click here to download ENSELUG00000012769's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000012769's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000012769	polr1a	65	32.107	ENSELUG00000014016	polr3a	74	32.143
ENSELUG00000012769	polr1a	69	32.047	ENSELUG00000014284	polr2a	59	31.833

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000012769	polr1a	99	66.725	ENSG00000068654	POLR1A	100	66.918	Homo_sapiens
ENSELUG00000012769	polr1a	68	76.877	ENSAPOG00000017945	polr1a	99	77.133	Acanthochromis_polyacanthus
ENSELUG00000012769	polr1a	99	66.628	ENSAMEG00000005807	POLR1A	100	71.209	Ailuropoda_melanoleuca
ENSELUG00000012769	polr1a	99	72.049	ENSACIG00000022147	polr1a	100	71.723	Amphilophus_citrinellus
ENSELUG00000012769	polr1a	99	75.336	ENSAOCG00000017336	polr1a	100	77.360	Amphiprion_ocellaris
ENSELUG00000012769	polr1a	93	85.417	ENSAPEG00000016105	polr1a	98	85.417	Amphiprion_percula
ENSELUG00000012769	polr1a	99	74.520	ENSATEG00000016773	polr1a	100	75.146	Anabas_testudineus
ENSELUG00000012769	polr1a	85	68.703	ENSAPLG00000013871	POLR1A	99	68.703	Anas_platyrhynchos
ENSELUG00000012769	polr1a	99	66.044	ENSACAG00000012141	POLR1A	99	65.505	Anolis_carolinensis
ENSELUG00000012769	polr1a	99	67.112	ENSANAG00000033927	POLR1A	100	67.092	Aotus_nancymaae
ENSELUG00000012769	polr1a	99	70.070	ENSACLG00000020541	polr1a	100	69.778	Astatotilapia_calliptera
ENSELUG00000012769	polr1a	99	67.401	ENSBTAG00000006481	POLR1A	100	67.343	Bos_taurus
ENSELUG00000012769	polr1a	96	40.756	WBGene00012999	rpoa-1	98	38.300	Caenorhabditis_elegans
ENSELUG00000012769	polr1a	99	67.188	ENSCJAG00000019547	POLR1A	100	67.459	Callithrix_jacchus
ENSELUG00000012769	polr1a	99	66.207	ENSCAFG00000007613	POLR1A	100	67.266	Canis_familiaris
ENSELUG00000012769	polr1a	99	66.017	ENSCAFG00020014752	POLR1A	100	67.072	Canis_lupus_dingo
ENSELUG00000012769	polr1a	99	66.997	ENSCHIG00000018204	POLR1A	100	66.608	Capra_hircus
ENSELUG00000012769	polr1a	99	67.210	ENSTSYG00000002761	POLR1A	100	67.210	Carlito_syrichta
ENSELUG00000012769	polr1a	96	64.046	ENSCAPG00000010132	POLR1A	100	64.264	Cavia_aperea
ENSELUG00000012769	polr1a	99	67.074	ENSCPOG00000012350	POLR1A	100	67.288	Cavia_porcellus
ENSELUG00000012769	polr1a	99	67.322	ENSCCAG00000019839	POLR1A	100	67.092	Cebus_capucinus
ENSELUG00000012769	polr1a	99	66.782	ENSCATG00000029786	POLR1A	100	67.091	Cercocebus_atys
ENSELUG00000012769	polr1a	99	67.364	ENSCLAG00000005187	POLR1A	100	67.364	Chinchilla_lanigera
ENSELUG00000012769	polr1a	99	66.975	ENSCSAG00000016251	POLR1A	100	67.033	Chlorocebus_sabaeus
ENSELUG00000012769	polr1a	98	68.735	ENSCPBG00000001115	POLR1A	99	68.600	Chrysemys_picta_bellii
ENSELUG00000012769	polr1a	98	46.866	ENSCSAVG00000007184	-	99	47.576	Ciona_savignyi
ENSELUG00000012769	polr1a	99	64.696	ENSCANG00000031785	POLR1A	100	64.754	Colobus_angolensis_palliatus
ENSELUG00000012769	polr1a	95	67.886	ENSCGRG00001006651	Polr1a	100	67.886	Cricetulus_griseus_chok1gshd
ENSELUG00000012769	polr1a	59	65.272	ENSCGRG00000010834	Polr1a	100	64.272	Cricetulus_griseus_crigri
ENSELUG00000012769	polr1a	99	68.735	ENSCSEG00000020190	polr1a	100	68.443	Cynoglossus_semilaevis
ENSELUG00000012769	polr1a	99	71.528	ENSCVAG00000020941	polr1a	100	71.603	Cyprinodon_variegatus
ENSELUG00000012769	polr1a	99	76.098	ENSDARG00000098375	polr1a	100	76.333	Danio_rerio
ENSELUG00000012769	polr1a	99	63.579	ENSDNOG00000010829	POLR1A	100	63.942	Dasypus_novemcinctus
ENSELUG00000012769	polr1a	99	66.996	ENSDORG00000008298	Polr1a	100	66.302	Dipodomys_ordii
ENSELUG00000012769	polr1a	79	43.367	FBgn0019938	RpI1	99	42.623	Drosophila_melanogaster
ENSELUG00000012769	polr1a	70	81.250	ENSETEG00000000412	-	71	81.250	Echinops_telfairi
ENSELUG00000012769	polr1a	88	48.141	ENSEBUG00000005667	-	99	48.631	Eptatretus_burgeri
ENSELUG00000012769	polr1a	99	66.380	ENSEASG00005001625	POLR1A	100	67.785	Equus_asinus_asinus
ENSELUG00000012769	polr1a	94	71.694	ENSECAG00000036306	-	100	71.694	Equus_caballus
ENSELUG00000012769	polr1a	94	71.694	ENSECAG00000030510	-	100	71.694	Equus_caballus
ENSELUG00000012769	polr1a	94	71.694	ENSECAG00000010092	POLR1A	100	71.694	Equus_caballus
ENSELUG00000012769	polr1a	83	78.125	ENSEEUG00000000676	POLR1A	80	81.102	Erinaceus_europaeus
ENSELUG00000012769	polr1a	99	67.188	ENSFCAG00000008966	POLR1A	100	67.130	Felis_catus
ENSELUG00000012769	polr1a	98	66.667	ENSFALG00000010082	POLR1A	99	66.903	Ficedula_albicollis
ENSELUG00000012769	polr1a	99	67.036	ENSFDAG00000013726	POLR1A	100	66.185	Fukomys_damarensis
ENSELUG00000012769	polr1a	99	70.199	ENSFHEG00000005996	polr1a	100	69.918	Fundulus_heteroclitus
ENSELUG00000012769	polr1a	99	66.353	ENSGMOG00000002230	polr1a	100	65.791	Gadus_morhua
ENSELUG00000012769	polr1a	89	64.645	ENSGALG00000038160	-	98	64.977	Gallus_gallus
ENSELUG00000012769	polr1a	99	71.179	ENSGAFG00000015266	polr1a	100	70.979	Gambusia_affinis
ENSELUG00000012769	polr1a	99	71.453	ENSGACG00000018791	polr1a	100	71.346	Gasterosteus_aculeatus
ENSELUG00000012769	polr1a	88	68.877	ENSGAGG00000004984	-	95	73.563	Gopherus_agassizii
ENSELUG00000012769	polr1a	99	67.015	ENSGGOG00000001788	POLR1A	100	67.208	Gorilla_gorilla
ENSELUG00000012769	polr1a	89	73.092	ENSHBUG00000020021	polr1a	98	73.092	Haplochromis_burtoni
ENSELUG00000012769	polr1a	99	65.750	ENSHGLG00000006334	POLR1A	100	66.108	Heterocephalus_glaber_female
ENSELUG00000012769	polr1a	99	65.563	ENSHGLG00100006614	POLR1A	100	65.917	Heterocephalus_glaber_male
ENSELUG00000012769	polr1a	99	69.860	ENSHCOG00000003345	polr1a	100	69.555	Hippocampus_comes
ENSELUG00000012769	polr1a	99	75.552	ENSIPUG00000013174	polr1a	100	75.263	Ictalurus_punctatus
ENSELUG00000012769	polr1a	99	66.277	ENSSTOG00000012580	POLR1A	99	66.277	Ictidomys_tridecemlineatus
ENSELUG00000012769	polr1a	99	67.288	ENSJJAG00000013113	Polr1a	100	67.288	Jaculus_jaculus
ENSELUG00000012769	polr1a	99	74.299	ENSKMAG00000007399	polr1a	100	74.254	Kryptolebias_marmoratus
ENSELUG00000012769	polr1a	93	76.929	ENSLBEG00000015401	polr1a	99	76.803	Labrus_bergylta
ENSELUG00000012769	polr1a	53	72.628	ENSLACG00000003218	polr1a	100	72.628	Latimeria_chalumnae
ENSELUG00000012769	polr1a	99	73.175	ENSLOCG00000010881	polr1a	100	73.473	Lepisosteus_oculatus
ENSELUG00000012769	polr1a	99	67.091	ENSLAFG00000014948	POLR1A	100	67.572	Loxodonta_africana
ENSELUG00000012769	polr1a	99	67.033	ENSMFAG00000046097	POLR1A	100	67.033	Macaca_fascicularis
ENSELUG00000012769	polr1a	99	66.917	ENSMMUG00000015815	POLR1A	100	66.917	Macaca_mulatta
ENSELUG00000012769	polr1a	99	67.187	ENSMNEG00000043313	POLR1A	100	67.187	Macaca_nemestrina
ENSELUG00000012769	polr1a	99	66.512	ENSMLEG00000042428	POLR1A	100	66.570	Mandrillus_leucophaeus
ENSELUG00000012769	polr1a	99	74.150	ENSMAMG00000016565	polr1a	100	73.783	Mastacembelus_armatus
ENSELUG00000012769	polr1a	99	74.649	ENSMZEG00005004915	polr1a	100	74.356	Maylandia_zebra
ENSELUG00000012769	polr1a	98	64.360	ENSMGAG00000013111	POLR1A	99	64.398	Meleagris_gallopavo
ENSELUG00000012769	polr1a	90	66.159	ENSMAUG00000008497	Polr1a	100	65.387	Mesocricetus_auratus
ENSELUG00000012769	polr1a	99	67.517	ENSMICG00000000757	POLR1A	100	67.517	Microcebus_murinus
ENSELUG00000012769	polr1a	99	67.054	ENSMOCG00000000122	Polr1a	100	67.189	Microtus_ochrogaster
ENSELUG00000012769	polr1a	99	72.855	ENSMMOG00000010216	polr1a	100	73.063	Mola_mola
ENSELUG00000012769	polr1a	99	63.476	ENSMODG00000009335	POLR1A	100	63.798	Monodelphis_domestica
ENSELUG00000012769	polr1a	99	74.065	ENSMALG00000013363	polr1a	100	73.923	Monopterus_albus
ENSELUG00000012769	polr1a	99	66.201	MGP_CAROLIEiJ_G0028494	Polr1a	100	65.630	Mus_caroli
ENSELUG00000012769	polr1a	99	66.453	ENSMUSG00000049553	Polr1a	100	65.493	Mus_musculus
ENSELUG00000012769	polr1a	99	66.802	MGP_PahariEiJ_G0022230	Polr1a	100	66.454	Mus_pahari
ENSELUG00000012769	polr1a	99	64.937	MGP_SPRETEiJ_G0029499	Polr1a	100	65.505	Mus_spretus
ENSELUG00000012769	polr1a	99	67.517	ENSMPUG00000009135	POLR1A	100	67.633	Mustela_putorius_furo
ENSELUG00000012769	polr1a	99	66.416	ENSMLUG00000015723	POLR1A	100	66.802	Myotis_lucifugus
ENSELUG00000012769	polr1a	99	66.222	ENSNGAG00000017907	Polr1a	100	66.474	Nannospalax_galili
ENSELUG00000012769	polr1a	99	74.649	ENSNBRG00000000519	polr1a	100	74.100	Neolamprologus_brichardi
ENSELUG00000012769	polr1a	99	65.167	ENSNLEG00000002264	POLR1A	100	65.280	Nomascus_leucogenys
ENSELUG00000012769	polr1a	74	84.252	ENSMEUG00000011665	-	75	84.252	Notamacropus_eugenii
ENSELUG00000012769	polr1a	97	62.906	ENSOPRG00000008269	POLR1A	100	62.744	Ochotona_princeps
ENSELUG00000012769	polr1a	99	67.288	ENSODEG00000003542	POLR1A	100	67.288	Octodon_degus
ENSELUG00000012769	polr1a	99	74.461	ENSONIG00000015895	polr1a	100	74.461	Oreochromis_niloticus
ENSELUG00000012769	polr1a	99	68.259	ENSOCUG00000010138	POLR1A	100	68.102	Oryctolagus_cuniculus
ENSELUG00000012769	polr1a	99	73.610	ENSORLG00000008753	polr1a	99	73.610	Oryzias_latipes
ENSELUG00000012769	polr1a	99	71.278	ENSORLG00020020726	polr1a	99	71.219	Oryzias_latipes_hni
ENSELUG00000012769	polr1a	94	80.851	ENSORLG00015016071	polr1a	98	80.851	Oryzias_latipes_hsok
ENSELUG00000012769	polr1a	99	66.378	ENSOGAG00000004031	POLR1A	100	67.015	Otolemur_garnettii
ENSELUG00000012769	polr1a	99	67.438	ENSOARG00000020601	POLR1A	100	66.609	Ovis_aries
ENSELUG00000012769	polr1a	99	66.609	ENSPPAG00000042450	POLR1A	100	66.802	Pan_paniscus
ENSELUG00000012769	polr1a	99	66.995	ENSPPRG00000006702	POLR1A	100	67.130	Panthera_pardus
ENSELUG00000012769	polr1a	99	66.532	ENSPTIG00000018783	POLR1A	100	66.667	Panthera_tigris_altaica
ENSELUG00000012769	polr1a	99	66.551	ENSPTRG00000012147	POLR1A	100	66.744	Pan_troglodytes
ENSELUG00000012769	polr1a	99	66.609	ENSPANG00000025908	POLR1A	100	66.917	Papio_anubis
ENSELUG00000012769	polr1a	93	79.861	ENSPKIG00000005468	polr1a	99	79.861	Paramormyrops_kingsleyae
ENSELUG00000012769	polr1a	62	67.535	ENSPSIG00000009321	-	99	67.535	Pelodiscus_sinensis
ENSELUG00000012769	polr1a	54	76.319	ENSPMGG00000009718	polr1a	95	76.319	Periophthalmus_magnuspinnatus
ENSELUG00000012769	polr1a	99	67.151	ENSPEMG00000022224	Polr1a	100	66.475	Peromyscus_maniculatus_bairdii
ENSELUG00000012769	polr1a	94	66.870	ENSPCIG00000004222	POLR1A	99	66.159	Phascolarctos_cinereus
ENSELUG00000012769	polr1a	99	72.727	ENSPFOG00000005025	polr1a	100	72.319	Poecilia_formosa
ENSELUG00000012769	polr1a	99	72.913	ENSPLAG00000021389	polr1a	100	72.563	Poecilia_latipinna
ENSELUG00000012769	polr1a	99	70.739	ENSPMEG00000006463	polr1a	100	70.797	Poecilia_mexicana
ENSELUG00000012769	polr1a	99	72.526	ENSPREG00000002389	polr1a	100	72.119	Poecilia_reticulata
ENSELUG00000012769	polr1a	99	66.454	ENSPPYG00000012217	POLR1A	100	66.686	Pongo_abelii
ENSELUG00000012769	polr1a	90	66.407	ENSPCAG00000011582	POLR1A	87	66.407	Procavia_capensis
ENSELUG00000012769	polr1a	99	66.609	ENSPCOG00000026987	POLR1A	100	67.903	Propithecus_coquereli
ENSELUG00000012769	polr1a	93	66.350	ENSPVAG00000012674	POLR1A	95	67.504	Pteropus_vampyrus
ENSELUG00000012769	polr1a	99	74.590	ENSPNYG00000000026	polr1a	100	74.297	Pundamilia_nyererei
ENSELUG00000012769	polr1a	99	76.009	ENSPNAG00000019223	polr1a	100	76.068	Pygocentrus_nattereri
ENSELUG00000012769	polr1a	99	66.802	ENSRNOG00000009545	Polr1a	100	65.935	Rattus_norvegicus
ENSELUG00000012769	polr1a	99	67.227	ENSRBIG00000028335	POLR1A	100	67.285	Rhinopithecus_bieti
ENSELUG00000012769	polr1a	99	67.227	ENSRROG00000031473	POLR1A	100	67.285	Rhinopithecus_roxellana
ENSELUG00000012769	polr1a	98	36.420	YOR341W	RPA190	99	36.215	Saccharomyces_cerevisiae
ENSELUG00000012769	polr1a	99	66.879	ENSSBOG00000030262	POLR1A	100	66.937	Saimiri_boliviensis_boliviensis
ENSELUG00000012769	polr1a	99	61.266	ENSSHAG00000014739	POLR1A	100	62.464	Sarcophilus_harrisii
ENSELUG00000012769	polr1a	99	74.505	ENSSFOG00015019716	polr1a	100	74.898	Scleropages_formosus
ENSELUG00000012769	polr1a	99	74.636	ENSSMAG00000014342	polr1a	100	74.577	Scophthalmus_maximus
ENSELUG00000012769	polr1a	99	75.497	ENSSDUG00000014631	polr1a	100	75.628	Seriola_dumerili
ENSELUG00000012769	polr1a	99	73.900	ENSSLDG00000024095	polr1a	100	73.900	Seriola_lalandi_dorsalis
ENSELUG00000012769	polr1a	70	95.122	ENSSARG00000003136	-	71	95.122	Sorex_araneus
ENSELUG00000012769	polr1a	99	65.283	ENSSPUG00000004215	POLR1A	98	72.500	Sphenodon_punctatus
ENSELUG00000012769	polr1a	63	79.592	ENSSPAG00000016341	polr1a	94	79.592	Stegastes_partitus
ENSELUG00000012769	polr1a	82	69.398	ENSSSCG00000008226	POLR1A	99	69.333	Sus_scrofa
ENSELUG00000012769	polr1a	97	66.431	ENSTGUG00000010704	POLR1A	100	66.118	Taeniopygia_guttata
ENSELUG00000012769	polr1a	99	72.232	ENSTRUG00000002210	polr1a	99	71.972	Takifugu_rubripes
ENSELUG00000012769	polr1a	99	67.473	ENSTNIG00000010116	polr1a	100	67.530	Tetraodon_nigroviridis
ENSELUG00000012769	polr1a	72	84.513	ENSTBEG00000008646	POLR1A	70	87.179	Tupaia_belangeri
ENSELUG00000012769	polr1a	99	64.430	ENSTTRG00000008597	POLR1A	100	65.099	Tursiops_truncatus
ENSELUG00000012769	polr1a	68	66.890	ENSUAMG00000012158	-	94	68.613	Ursus_americanus
ENSELUG00000012769	polr1a	99	65.685	ENSUMAG00000006700	POLR1A	97	70.913	Ursus_maritimus
ENSELUG00000012769	polr1a	99	66.073	ENSVVUG00000001245	POLR1A	100	67.150	Vulpes_vulpes
ENSELUG00000012769	polr1a	99	63.699	ENSXETG00000001952	polr1a	100	64.595	Xenopus_tropicalis
ENSELUG00000012769	polr1a	99	72.203	ENSXMAG00000004032	polr1a	100	72.086	Xiphophorus_maculatus