EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000012801 (Gene tree)
Gene ID: 105024443
Gene Symbol: rab13
Alias: cb764|hm:zeh0455
Full Name: RAB13%2C member RAS oncogene family
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 9106 bases
Position: chrLG20:26237047-26246152
Accession: 105024443
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000012587	MMR_HSR1	PF01926.23	2.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000038158	-	5430	XM_010894397	ENSELUP00000012587	199 (aa)	XP_010892699	UPI000576389A

Gene Model

Click here to download ENSELUG00000012801's gene model file

Pathways

Pathway ID	Pathway Name	Source
els04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000012801's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000012801	rab13	88	51.429	ENSELUG00000020012	rab15	83	51.429
ENSELUG00000012801	rab13	90	55.000	ENSELUG00000023815	-	89	55.000
ENSELUG00000012801	rab13	80	42.500	ENSELUG00000006604	rab25a	75	42.500
ENSELUG00000012801	rab13	74	39.375	ENSELUG00000011352	-	76	36.041
ENSELUG00000012801	rab13	85	55.621	ENSELUG00000011680	zgc:171927	80	55.621
ENSELUG00000012801	rab13	74	30.405	ENSELUG00000004092	rab20	54	30.405
ENSELUG00000012801	rab13	83	42.424	ENSELUG00000009832	rab14	77	42.424
ENSELUG00000012801	rab13	69	31.159	ENSELUG00000018031	arl3	70	31.159
ENSELUG00000012801	rab13	79	44.172	ENSELUG00000013219	rab33a	68	44.172
ENSELUG00000012801	rab13	85	36.207	ENSELUG00000016682	-	84	36.207
ENSELUG00000012801	rab13	83	41.818	ENSELUG00000013571	-	90	36.559
ENSELUG00000012801	rab13	94	38.947	ENSELUG00000013436	rab5ab	88	38.947
ENSELUG00000012801	rab13	77	38.854	ENSELUG00000022157	rab34a	59	38.854
ENSELUG00000012801	rab13	88	55.114	ENSELUG00000005989	RAB15	81	55.114
ENSELUG00000012801	rab13	77	44.805	ENSELUG00000022470	rab6bb	74	44.805
ENSELUG00000012801	rab13	99	33.168	ENSELUG00000013666	si:cabz01085950.1	98	33.168
ENSELUG00000012801	rab13	84	44.643	ENSELUG00000023964	rab2a	79	44.643
ENSELUG00000012801	rab13	90	53.333	ENSELUG00000012428	-	89	53.333
ENSELUG00000012801	rab13	81	47.826	ENSELUG00000022997	rab30	80	47.826
ENSELUG00000012801	rab13	96	33.503	ENSELUG00000017558	mras	94	33.503
ENSELUG00000012801	rab13	83	42.515	ENSELUG00000010345	rab42a	77	42.515
ENSELUG00000012801	rab13	77	44.156	ENSELUG00000001257	rab6ba	74	44.156
ENSELUG00000012801	rab13	93	39.894	ENSELUG00000006462	rab5aa	87	39.894
ENSELUG00000012801	rab13	61	32.090	ENSELUG00000013412	arfrp1	65	32.090
ENSELUG00000012801	rab13	82	36.905	ENSELUG00000016622	rab9a	83	36.905
ENSELUG00000012801	rab13	86	45.349	ENSELUG00000014785	rab4a	81	45.349
ENSELUG00000012801	rab13	100	50.000	ENSELUG00000012166	RAB1A	91	49.744
ENSELUG00000012801	rab13	87	46.243	ENSELUG00000020948	-	94	52.459
ENSELUG00000012801	rab13	68	31.387	ENSELUG00000000436	-	82	31.387
ENSELUG00000012801	rab13	84	39.080	ENSELUG00000018921	rab36	66	39.080
ENSELUG00000012801	rab13	73	43.243	ENSELUG00000002575	rab33ba	61	43.243
ENSELUG00000012801	rab13	88	37.989	ENSELUG00000000175	zgc:100918	87	37.989
ENSELUG00000012801	rab13	84	36.994	ENSELUG00000021199	RAB9A	79	36.994
ENSELUG00000012801	rab13	96	33.333	ENSELUG00000003058	KRAS	98	34.896
ENSELUG00000012801	rab13	90	30.000	ENSELUG00000008604	rras2	94	30.729
ENSELUG00000012801	rab13	73	40.000	ENSELUG00000020788	rab23	66	39.744
ENSELUG00000012801	rab13	95	30.890	ENSELUG00000016028	rhebl1	96	30.890
ENSELUG00000012801	rab13	93	40.625	ENSELUG00000003805	rab18a	91	40.625
ENSELUG00000012801	rab13	87	46.243	ENSELUG00000021148	rab11bb	80	46.243
ENSELUG00000012801	rab13	87	45.665	ENSELUG00000000916	-	91	51.587
ENSELUG00000012801	rab13	93	38.624	ENSELUG00000023120	-	89	38.624
ENSELUG00000012801	rab13	80	34.375	ENSELUG00000006480	rheb	86	34.375
ENSELUG00000012801	rab13	87	46.243	ENSELUG00000002999	rab11a	89	51.163
ENSELUG00000012801	rab13	86	34.302	ENSELUG00000004712	HRAS	90	34.302
ENSELUG00000012801	rab13	77	39.490	ENSELUG00000005597	rab34b	61	39.490
ENSELUG00000012801	rab13	98	47.030	ENSELUG00000023972	rab35	99	46.766
ENSELUG00000012801	rab13	90	53.333	ENSELUG00000015413	rab1ab	88	53.333
ENSELUG00000012801	rab13	85	36.207	ENSELUG00000006539	RAB7A	84	36.207
ENSELUG00000012801	rab13	86	44.186	ENSELUG00000012060	rab25b	82	44.186
ENSELUG00000012801	rab13	81	40.994	ENSELUG00000010439	-	73	40.994
ENSELUG00000012801	rab13	83	33.523	ENSELUG00000013206	rasl11a	75	33.523
ENSELUG00000012801	rab13	85	44.767	ENSELUG00000013957	-	81	44.767
ENSELUG00000012801	rab13	81	40.994	ENSELUG00000018516	rab5c	74	40.994
ENSELUG00000012801	rab13	81	36.810	ENSELUG00000005090	si:ch73-116o1.2	68	36.810
ENSELUG00000012801	rab13	82	37.278	ENSELUG00000004378	rab9b	83	37.278
ENSELUG00000012801	rab13	81	41.566	ENSELUG00000015343	rab22a	83	41.566
ENSELUG00000012801	rab13	86	47.674	ENSELUG00000007123	rab12	72	47.674
ENSELUG00000012801	rab13	87	46.243	ENSELUG00000019240	-	89	46.243
ENSELUG00000012801	rab13	87	35.227	ENSELUG00000018367	rheb	93	35.227
ENSELUG00000012801	rab13	97	43.478	ENSELUG00000012035	rab11al	96	43.478
ENSELUG00000012801	rab13	93	42.188	ENSELUG00000016450	rab18b	91	42.188
ENSELUG00000012801	rab13	87	45.198	ENSELUG00000005304	rab39ba	83	45.198
ENSELUG00000012801	rab13	77	45.455	ENSELUG00000008876	rab6a	74	44.805
ENSELUG00000012801	rab13	85	49.704	ENSELUG00000023247	si:dkey-16l2.16	80	49.704

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000012801	rab13	99	76.733	ENSG00000143545	RAB13	99	76.733	Homo_sapiens
ENSELUG00000012801	rab13	91	91.209	ENSACIG00000008584	rab13	88	91.209	Amphilophus_citrinellus
ENSELUG00000012801	rab13	99	77.228	ENSANAG00000030247	-	99	77.228	Aotus_nancymaae
ENSELUG00000012801	rab13	100	92.079	ENSAMXG00000030712	rab13	100	92.079	Astyanax_mexicanus
ENSELUG00000012801	rab13	99	76.585	ENSBTAG00000017604	RAB13	99	76.585	Bos_taurus
ENSELUG00000012801	rab13	81	46.626	WBGene00019317	K02E10.1	75	46.626	Caenorhabditis_elegans
ENSELUG00000012801	rab13	90	81.283	ENSCJAG00000009933	-	99	77.073	Callithrix_jacchus
ENSELUG00000012801	rab13	99	76.585	ENSCHIG00000022271	-	99	76.585	Capra_hircus
ENSELUG00000012801	rab13	99	75.980	ENSCPOG00000011491	-	99	75.980	Cavia_porcellus
ENSELUG00000012801	rab13	99	76.733	ENSCCAG00000028502	-	99	76.733	Cebus_capucinus
ENSELUG00000012801	rab13	99	76.733	ENSCATG00000041779	-	99	76.733	Cercocebus_atys
ENSELUG00000012801	rab13	99	76.238	ENSCLAG00000006603	-	99	76.238	Chinchilla_lanigera
ENSELUG00000012801	rab13	99	76.733	ENSCANG00000036573	-	99	76.733	Colobus_angolensis_palliatus
ENSELUG00000012801	rab13	99	75.369	ENSCGRG00001021505	Rab13	99	75.369	Cricetulus_griseus_chok1gshd
ENSELUG00000012801	rab13	99	75.369	ENSCGRG00000012126	Rab13	99	75.369	Cricetulus_griseus_crigri
ENSELUG00000012801	rab13	100	90.500	ENSCSEG00000002358	rab13	100	90.500	Cynoglossus_semilaevis
ENSELUG00000012801	rab13	100	92.000	ENSDARG00000034771	rab13	100	92.000	Danio_rerio
ENSELUG00000012801	rab13	99	77.723	ENSDORG00000001591	Rab13	99	77.723	Dipodomys_ordii
ENSELUG00000012801	rab13	99	76.733	ENSEASG00005000683	-	99	76.733	Equus_asinus_asinus
ENSELUG00000012801	rab13	99	76.733	ENSECAG00000016551	RAB13	99	76.733	Equus_caballus
ENSELUG00000012801	rab13	100	73.892	ENSEEUG00000001233	-	100	73.892	Erinaceus_europaeus
ENSELUG00000012801	rab13	99	75.862	ENSFCAG00000045269	-	99	75.862	Felis_catus
ENSELUG00000012801	rab13	66	88.636	ENSFDAG00000014469	-	100	88.636	Fukomys_damarensis
ENSELUG00000012801	rab13	100	87.000	ENSFHEG00000021221	rab13	97	92.090	Fundulus_heteroclitus
ENSELUG00000012801	rab13	100	90.500	ENSGACG00000011925	rab13	99	90.500	Gasterosteus_aculeatus
ENSELUG00000012801	rab13	91	80.874	ENSGAGG00000000742	-	100	76.119	Gopherus_agassizii
ENSELUG00000012801	rab13	99	76.733	ENSGGOG00000023693	RAB13	99	76.733	Gorilla_gorilla
ENSELUG00000012801	rab13	99	75.124	ENSHGLG00000008749	RAB13	99	75.124	Heterocephalus_glaber_female
ENSELUG00000012801	rab13	99	75.124	ENSHGLG00100013608	RAB13	99	75.124	Heterocephalus_glaber_male
ENSELUG00000012801	rab13	100	85.000	ENSHCOG00000007440	rab13	97	92.655	Hippocampus_comes
ENSELUG00000012801	rab13	100	88.557	ENSIPUG00000003199	rab13	100	88.557	Ictalurus_punctatus
ENSELUG00000012801	rab13	99	77.073	ENSSTOG00000011222	-	99	77.073	Ictidomys_tridecemlineatus
ENSELUG00000012801	rab13	99	77.228	ENSJJAG00000010575	Rab13	99	77.228	Jaculus_jaculus
ENSELUG00000012801	rab13	100	87.000	ENSKMAG00000001908	rab13	100	87.000	Kryptolebias_marmoratus
ENSELUG00000012801	rab13	100	92.000	ENSLBEG00000026779	rab13	100	92.000	Labrus_bergylta
ENSELUG00000012801	rab13	89	74.576	ENSLACG00000008103	-	99	74.576	Latimeria_chalumnae
ENSELUG00000012801	rab13	99	76.733	ENSMFAG00000041018	RAB13	99	76.733	Macaca_fascicularis
ENSELUG00000012801	rab13	99	76.733	ENSMNEG00000028951	-	99	76.733	Macaca_nemestrina
ENSELUG00000012801	rab13	99	76.733	ENSMLEG00000042247	-	99	76.733	Mandrillus_leucophaeus
ENSELUG00000012801	rab13	100	90.000	ENSMAMG00000014602	rab13	100	90.000	Mastacembelus_armatus
ENSELUG00000012801	rab13	99	75.743	ENSMAUG00000015713	Rab13	99	75.743	Mesocricetus_auratus
ENSELUG00000012801	rab13	99	77.612	ENSMICG00000010340	-	99	77.612	Microcebus_murinus
ENSELUG00000012801	rab13	99	75.743	ENSMOCG00000021448	Rab13	99	75.743	Microtus_ochrogaster
ENSELUG00000012801	rab13	98	78.000	ENSMODG00000017295	-	84	78.000	Monodelphis_domestica
ENSELUG00000012801	rab13	99	75.610	MGP_CAROLIEiJ_G0025227	Rab13	99	75.610	Mus_caroli
ENSELUG00000012801	rab13	99	76.098	ENSMUSG00000027935	Rab13	99	76.098	Mus_musculus
ENSELUG00000012801	rab13	100	75.743	MGP_PahariEiJ_G0026671	Rab13	100	75.743	Mus_pahari
ENSELUG00000012801	rab13	99	76.119	ENSNGAG00000010309	Rab13	99	76.119	Nannospalax_galili
ENSELUG00000012801	rab13	100	90.000	ENSNBRG00000004124	rab13	100	90.000	Neolamprologus_brichardi
ENSELUG00000012801	rab13	99	76.733	ENSNLEG00000028944	-	94	82.162	Nomascus_leucogenys
ENSELUG00000012801	rab13	99	78.218	ENSMEUG00000009667	-	99	78.218	Notamacropus_eugenii
ENSELUG00000012801	rab13	64	88.976	ENSODEG00000012634	-	100	88.976	Octodon_degus
ENSELUG00000012801	rab13	99	76.238	ENSODEG00000010443	-	99	76.238	Octodon_degus
ENSELUG00000012801	rab13	100	87.129	ENSONIG00000006340	rab13	100	87.129	Oreochromis_niloticus
ENSELUG00000012801	rab13	87	85.549	ENSOCUG00000006286	-	97	85.549	Oryctolagus_cuniculus
ENSELUG00000012801	rab13	100	91.500	ENSOMEG00000008210	rab13	100	91.500	Oryzias_melastigma
ENSELUG00000012801	rab13	99	75.000	ENSOGAG00000016969	-	99	75.000	Otolemur_garnettii
ENSELUG00000012801	rab13	99	76.733	ENSPPAG00000028435	-	99	76.733	Pan_paniscus
ENSELUG00000012801	rab13	99	75.862	ENSPPRG00000008865	-	99	75.862	Panthera_pardus
ENSELUG00000012801	rab13	99	76.733	ENSPTRG00000001370	RAB13	99	76.733	Pan_troglodytes
ENSELUG00000012801	rab13	99	76.733	ENSPANG00000004479	-	99	76.733	Papio_anubis
ENSELUG00000012801	rab13	100	90.000	ENSPMGG00000007680	rab13	100	90.000	Periophthalmus_magnuspinnatus
ENSELUG00000012801	rab13	63	78.030	ENSPEMG00000017353	-	99	78.030	Peromyscus_maniculatus_bairdii
ENSELUG00000012801	rab13	99	78.218	ENSPCIG00000029350	-	99	78.218	Phascolarctos_cinereus
ENSELUG00000012801	rab13	89	92.090	ENSPLAG00000005832	RAB13	95	92.090	Poecilia_latipinna
ENSELUG00000012801	rab13	93	90.323	ENSPREG00000017567	rab13	100	88.000	Poecilia_reticulata
ENSELUG00000012801	rab13	99	76.733	ENSPPYG00000000790	-	99	76.733	Pongo_abelii
ENSELUG00000012801	rab13	99	77.612	ENSPCOG00000012189	-	99	77.612	Propithecus_coquereli
ENSELUG00000012801	rab13	99	76.119	ENSPVAG00000011095	-	99	76.119	Pteropus_vampyrus
ENSELUG00000012801	rab13	89	95.480	ENSPNAG00000004189	rab13	94	95.480	Pygocentrus_nattereri
ENSELUG00000012801	rab13	99	75.610	ENSRNOG00000016733	Rab13	99	75.610	Rattus_norvegicus
ENSELUG00000012801	rab13	99	76.733	ENSRBIG00000008552	-	99	76.733	Rhinopithecus_bieti
ENSELUG00000012801	rab13	99	76.733	ENSRROG00000036885	-	99	76.733	Rhinopithecus_roxellana
ENSELUG00000012801	rab13	99	77.612	ENSSBOG00000020342	-	99	77.612	Saimiri_boliviensis_boliviensis
ENSELUG00000012801	rab13	99	78.218	ENSSHAG00000011866	-	99	78.218	Sarcophilus_harrisii
ENSELUG00000012801	rab13	99	77.073	ENSSSCG00000006564	-	99	77.073	Sus_scrofa
ENSELUG00000012801	rab13	100	91.500	ENSTRUG00000024177	rab13	100	91.500	Takifugu_rubripes
ENSELUG00000012801	rab13	99	77.723	ENSTBEG00000012734	-	99	77.723	Tupaia_belangeri
ENSELUG00000012801	rab13	99	77.073	ENSTTRG00000011183	-	99	77.073	Tursiops_truncatus
ENSELUG00000012801	rab13	69	79.710	ENSXETG00000020729	rab13	100	72.671	Xenopus_tropicalis
ENSELUG00000012801	rab13	89	90.960	ENSXCOG00000019533	rab13	95	90.960	Xiphophorus_couchianus