EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000012821 (Gene tree)
Gene ID: 105026207
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 2700 bases
Position: chrLG08:3132511-3135210
Accession: 105026207
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000034301	LSM	PF01423.22	1.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000020943	-	396	XM_010897515	ENSELUP00000034301	132 (aa)	XP_010895817	-

Gene Model

Click here to download ENSELUG00000012821's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03018	RNA degradation	KEGG
els03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000012821's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000012821	lsm4	73	30.303	ENSELUG00000008241	smx5	99	30.303

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000012821	lsm4	66	98.851	ENSG00000130520	LSM4	95	84.328	Homo_sapiens
ENSELUG00000012821	lsm4	93	93.496	ENSAPOG00000005643	lsm4	86	91.538	Acanthochromis_polyacanthus
ENSELUG00000012821	lsm4	66	98.851	ENSAMEG00000011162	LSM4	90	84.328	Ailuropoda_melanoleuca
ENSELUG00000012821	lsm4	100	89.130	ENSAOCG00000006414	lsm4	93	89.130	Amphiprion_ocellaris
ENSELUG00000012821	lsm4	100	88.489	ENSAPEG00000006238	lsm4	93	88.489	Amphiprion_percula
ENSELUG00000012821	lsm4	93	93.496	ENSATEG00000016559	lsm4	86	91.538	Anabas_testudineus
ENSELUG00000012821	lsm4	66	98.851	ENSANAG00000034659	LSM4	95	84.328	Aotus_nancymaae
ENSELUG00000012821	lsm4	100	88.321	ENSACLG00000022738	lsm4	93	89.051	Astatotilapia_calliptera
ENSELUG00000012821	lsm4	100	96.241	ENSAMXG00000016932	lsm4	93	96.241	Astyanax_mexicanus
ENSELUG00000012821	lsm4	66	98.851	ENSBTAG00000008578	LSM4	95	84.328	Bos_taurus
ENSELUG00000012821	lsm4	62	76.829	WBGene00003078	lsm-4	80	68.687	Caenorhabditis_elegans
ENSELUG00000012821	lsm4	66	98.851	ENSCJAG00000014171	LSM4	95	84.328	Callithrix_jacchus
ENSELUG00000012821	lsm4	66	98.851	ENSCAFG00000014900	LSM4	86	84.328	Canis_familiaris
ENSELUG00000012821	lsm4	66	98.851	ENSCAFG00020012137	LSM4	95	84.328	Canis_lupus_dingo
ENSELUG00000012821	lsm4	66	98.851	ENSCHIG00000010928	LSM4	87	82.090	Capra_hircus
ENSELUG00000012821	lsm4	66	97.701	ENSTSYG00000030906	LSM4	95	83.582	Carlito_syrichta
ENSELUG00000012821	lsm4	66	97.701	ENSCAPG00000014140	LSM4	95	83.582	Cavia_aperea
ENSELUG00000012821	lsm4	66	97.701	ENSCPOG00000024117	LSM4	95	83.582	Cavia_porcellus
ENSELUG00000012821	lsm4	66	98.851	ENSCCAG00000036308	LSM4	95	84.328	Cebus_capucinus
ENSELUG00000012821	lsm4	66	98.851	ENSCATG00000029311	LSM4	95	84.328	Cercocebus_atys
ENSELUG00000012821	lsm4	100	81.818	ENSCLAG00000010828	LSM4	95	81.818	Chinchilla_lanigera
ENSELUG00000012821	lsm4	66	98.851	ENSCSAG00000005370	LSM4	95	84.328	Chlorocebus_sabaeus
ENSELUG00000012821	lsm4	100	94.030	ENSCPBG00000012925	LSM4	95	94.030	Chrysemys_picta_bellii
ENSELUG00000012821	lsm4	64	92.941	ENSCING00000007519	-	72	92.308	Ciona_intestinalis
ENSELUG00000012821	lsm4	96	74.803	ENSCSAVG00000008596	-	99	71.654	Ciona_savignyi
ENSELUG00000012821	lsm4	66	98.851	ENSCANG00000043686	LSM4	95	84.328	Colobus_angolensis_palliatus
ENSELUG00000012821	lsm4	66	95.402	ENSCGRG00001014436	Lsm4	95	82.090	Cricetulus_griseus_chok1gshd
ENSELUG00000012821	lsm4	66	95.402	ENSCGRG00000009398	Lsm4	96	82.090	Cricetulus_griseus_crigri
ENSELUG00000012821	lsm4	73	97.917	ENSCSEG00000016127	lsm4	93	93.182	Cynoglossus_semilaevis
ENSELUG00000012821	lsm4	89	90.756	ENSCVAG00000021828	lsm4	91	90.756	Cyprinodon_variegatus
ENSELUG00000012821	lsm4	100	91.729	ENSCVAG00000010601	lsm4	93	91.729	Cyprinodon_variegatus
ENSELUG00000012821	lsm4	100	85.612	ENSDARG00000023852	lsm4	97	85.507	Danio_rerio
ENSELUG00000012821	lsm4	100	81.061	ENSDORG00000024225	Lsm4	95	81.343	Dipodomys_ordii
ENSELUG00000012821	lsm4	73	82.292	FBgn0032240	CG17768	62	82.292	Drosophila_melanogaster
ENSELUG00000012821	lsm4	89	80.508	ENSETEG00000007762	-	95	82.500	Echinops_telfairi
ENSELUG00000012821	lsm4	56	93.243	ENSEBUG00000003639	-	62	78.723	Eptatretus_burgeri
ENSELUG00000012821	lsm4	66	98.851	ENSECAG00000010141	LSM4	54	82.090	Equus_caballus
ENSELUG00000012821	lsm4	66	98.851	ENSFCAG00000040580	LSM4	95	84.328	Felis_catus
ENSELUG00000012821	lsm4	100	94.030	ENSFALG00000009478	LSM4	95	94.030	Ficedula_albicollis
ENSELUG00000012821	lsm4	66	98.851	ENSFDAG00000010124	LSM4	96	82.836	Fukomys_damarensis
ENSELUG00000012821	lsm4	73	100.000	ENSGMOG00000007729	lsm4	93	85.401	Gadus_morhua
ENSELUG00000012821	lsm4	100	94.030	ENSGALG00000003385	LSM4	95	94.030	Gallus_gallus
ENSELUG00000012821	lsm4	95	92.800	ENSGAFG00000004903	lsm4	84	90.090	Gambusia_affinis
ENSELUG00000012821	lsm4	72	98.947	ENSGACG00000008140	lsm4	86	89.922	Gasterosteus_aculeatus
ENSELUG00000012821	lsm4	100	94.030	ENSGAGG00000017812	LSM4	95	94.030	Gopherus_agassizii
ENSELUG00000012821	lsm4	66	98.851	ENSGGOG00000012914	-	95	84.328	Gorilla_gorilla
ENSELUG00000012821	lsm4	100	88.971	ENSHBUG00000008858	lsm4	74	89.706	Haplochromis_burtoni
ENSELUG00000012821	lsm4	100	81.818	ENSHGLG00000006568	LSM4	95	81.818	Heterocephalus_glaber_female
ENSELUG00000012821	lsm4	70	97.826	ENSHGLG00100007894	LSM4	99	97.826	Heterocephalus_glaber_male
ENSELUG00000012821	lsm4	100	91.667	ENSHCOG00000008819	lsm4	93	91.667	Hippocampus_comes
ENSELUG00000012821	lsm4	100	89.474	ENSIPUG00000005368	Lsm4	93	93.985	Ictalurus_punctatus
ENSELUG00000012821	lsm4	66	98.851	ENSSTOG00000016494	LSM4	95	84.328	Ictidomys_tridecemlineatus
ENSELUG00000012821	lsm4	66	96.552	ENSJJAG00000017420	Lsm4	95	82.090	Jaculus_jaculus
ENSELUG00000012821	lsm4	64	98.824	ENSKMAG00000005073	lsm4	93	91.045	Kryptolebias_marmoratus
ENSELUG00000012821	lsm4	74	98.980	ENSLBEG00000027930	lsm4	93	87.770	Labrus_bergylta
ENSELUG00000012821	lsm4	100	85.821	ENSLACG00000015861	LSM4	94	89.552	Latimeria_chalumnae
ENSELUG00000012821	lsm4	100	94.737	ENSLOCG00000002025	lsm4	93	94.737	Lepisosteus_oculatus
ENSELUG00000012821	lsm4	100	82.576	ENSLAFG00000017459	LSM4	95	84.328	Loxodonta_africana
ENSELUG00000012821	lsm4	66	98.851	ENSMFAG00000031194	LSM4	95	84.328	Macaca_fascicularis
ENSELUG00000012821	lsm4	66	98.851	ENSMMUG00000004405	LSM4	95	84.328	Macaca_mulatta
ENSELUG00000012821	lsm4	66	98.851	ENSMNEG00000042899	LSM4	95	84.328	Macaca_nemestrina
ENSELUG00000012821	lsm4	66	98.851	ENSMLEG00000027948	LSM4	95	84.328	Mandrillus_leucophaeus
ENSELUG00000012821	lsm4	100	91.667	ENSMAMG00000006190	lsm4	93	91.667	Mastacembelus_armatus
ENSELUG00000012821	lsm4	100	88.971	ENSMZEG00005016420	lsm4	93	89.706	Maylandia_zebra
ENSELUG00000012821	lsm4	100	83.582	ENSMGAG00000004976	LSM4	95	89.552	Meleagris_gallopavo
ENSELUG00000012821	lsm4	100	81.818	ENSMICG00000000222	LSM4	95	83.582	Microcebus_murinus
ENSELUG00000012821	lsm4	66	95.402	ENSMOCG00000020861	Lsm4	95	82.090	Microtus_ochrogaster
ENSELUG00000012821	lsm4	89	82.203	ENSMODG00000015044	-	95	84.167	Monodelphis_domestica
ENSELUG00000012821	lsm4	100	90.977	ENSMALG00000018159	lsm4	93	90.977	Monopterus_albus
ENSELUG00000012821	lsm4	66	95.402	MGP_CAROLIEiJ_G0031158	Lsm4	95	82.090	Mus_caroli
ENSELUG00000012821	lsm4	66	95.402	ENSMUSG00000031848	Lsm4	95	87.755	Mus_musculus
ENSELUG00000012821	lsm4	66	95.402	MGP_PahariEiJ_G0021623	Lsm4	95	82.090	Mus_pahari
ENSELUG00000012821	lsm4	66	95.402	MGP_SPRETEiJ_G0032276	Lsm4	95	82.090	Mus_spretus
ENSELUG00000012821	lsm4	66	98.851	ENSMPUG00000015589	LSM4	95	84.328	Mustela_putorius_furo
ENSELUG00000012821	lsm4	66	98.851	ENSMLUG00000004010	LSM4	95	84.328	Myotis_lucifugus
ENSELUG00000012821	lsm4	66	95.402	ENSNGAG00000008644	Lsm4	95	82.090	Nannospalax_galili
ENSELUG00000012821	lsm4	80	98.095	ENSNBRG00000022150	lsm4	65	98.095	Neolamprologus_brichardi
ENSELUG00000012821	lsm4	55	95.890	ENSMEUG00000013229	LSM4	95	80.000	Notamacropus_eugenii
ENSELUG00000012821	lsm4	59	96.154	ENSOPRG00000005575	LSM4	95	79.661	Ochotona_princeps
ENSELUG00000012821	lsm4	66	88.506	ENSODEG00000004519	-	95	73.134	Octodon_degus
ENSELUG00000012821	lsm4	100	81.818	ENSODEG00000020549	-	95	82.090	Octodon_degus
ENSELUG00000012821	lsm4	100	88.321	ENSONIG00000012724	lsm4	93	89.051	Oreochromis_niloticus
ENSELUG00000012821	lsm4	82	92.035	ENSOANG00000007434	LSM4	97	92.035	Ornithorhynchus_anatinus
ENSELUG00000012821	lsm4	100	89.552	ENSORLG00000008391	lsm4	92	90.226	Oryzias_latipes
ENSELUG00000012821	lsm4	100	90.299	ENSORLG00020014829	lsm4	92	90.977	Oryzias_latipes_hni
ENSELUG00000012821	lsm4	100	89.552	ENSORLG00015010205	lsm4	92	90.226	Oryzias_latipes_hsok
ENSELUG00000012821	lsm4	96	92.913	ENSOMEG00000003606	lsm4	88	92.913	Oryzias_melastigma
ENSELUG00000012821	lsm4	74	95.918	ENSOGAG00000027992	LSM4	90	83.206	Otolemur_garnettii
ENSELUG00000012821	lsm4	66	98.851	ENSOARG00000012553	LSM4	94	82.645	Ovis_aries
ENSELUG00000012821	lsm4	66	98.851	ENSPPAG00000044045	-	95	84.328	Pan_paniscus
ENSELUG00000012821	lsm4	66	98.851	ENSPPRG00000018264	LSM4	95	84.328	Panthera_pardus
ENSELUG00000012821	lsm4	66	98.851	ENSPTIG00000006306	LSM4	96	84.328	Panthera_tigris_altaica
ENSELUG00000012821	lsm4	82	95.413	ENSPTRG00000031470	LSM4	95	84.328	Pan_troglodytes
ENSELUG00000012821	lsm4	82	95.413	ENSPANG00000014399	LSM4	95	84.328	Papio_anubis
ENSELUG00000012821	lsm4	100	95.489	ENSPKIG00000006154	lsm4	93	95.489	Paramormyrops_kingsleyae
ENSELUG00000012821	lsm4	100	85.714	ENSPSIG00000012358	LSM4	96	90.226	Pelodiscus_sinensis
ENSELUG00000012821	lsm4	66	95.402	ENSPEMG00000001358	Lsm4	95	82.090	Peromyscus_maniculatus_bairdii
ENSELUG00000012821	lsm4	95	93.600	ENSPFOG00000000570	lsm4	66	93.600	Poecilia_formosa
ENSELUG00000012821	lsm4	95	94.400	ENSPLAG00000016267	lsm4	87	94.400	Poecilia_latipinna
ENSELUG00000012821	lsm4	95	93.600	ENSPMEG00000016378	lsm4	87	93.600	Poecilia_mexicana
ENSELUG00000012821	lsm4	95	94.400	ENSPREG00000011290	lsm4	66	94.400	Poecilia_reticulata
ENSELUG00000012821	lsm4	66	98.851	ENSPPYG00000009736	LSM4	95	84.328	Pongo_abelii
ENSELUG00000012821	lsm4	89	80.508	ENSPCAG00000008513	LSM4	95	82.500	Procavia_capensis
ENSELUG00000012821	lsm4	100	81.818	ENSPCOG00000019837	LSM4	95	83.582	Propithecus_coquereli
ENSELUG00000012821	lsm4	66	98.851	ENSPVAG00000015383	LSM4	95	84.328	Pteropus_vampyrus
ENSELUG00000012821	lsm4	100	88.971	ENSPNYG00000016794	lsm4	93	89.706	Pundamilia_nyererei
ENSELUG00000012821	lsm4	100	96.970	ENSPNAG00000016598	lsm4	98	96.970	Pygocentrus_nattereri
ENSELUG00000012821	lsm4	66	95.402	ENSRNOG00000019572	Lsm4	95	82.090	Rattus_norvegicus
ENSELUG00000012821	lsm4	66	98.851	ENSRBIG00000024717	LSM4	95	84.328	Rhinopithecus_bieti
ENSELUG00000012821	lsm4	66	98.851	ENSRROG00000045706	LSM4	95	84.328	Rhinopithecus_roxellana
ENSELUG00000012821	lsm4	62	40.217	YER112W	LSM4	51	39.583	Saccharomyces_cerevisiae
ENSELUG00000012821	lsm4	56	98.649	ENSSBOG00000022455	LSM4	95	82.645	Saimiri_boliviensis_boliviensis
ENSELUG00000012821	lsm4	100	84.091	ENSSHAG00000011559	LSM4	95	85.821	Sarcophilus_harrisii
ENSELUG00000012821	lsm4	100	89.474	ENSSFOG00015021067	lsm4	93	89.474	Scleropages_formosus
ENSELUG00000012821	lsm4	74	97.959	ENSSMAG00000021020	lsm4	87	86.154	Scophthalmus_maximus
ENSELUG00000012821	lsm4	93	93.496	ENSSDUG00000009588	lsm4	78	91.538	Seriola_dumerili
ENSELUG00000012821	lsm4	93	93.496	ENSSLDG00000006827	lsm4	77	91.538	Seriola_lalandi_dorsalis
ENSELUG00000012821	lsm4	96	74.242	ENSSPUG00000010166	LSM4	63	98.980	Sphenodon_punctatus
ENSELUG00000012821	lsm4	93	93.496	ENSSPAG00000011615	lsm4	86	91.538	Stegastes_partitus
ENSELUG00000012821	lsm4	66	98.851	ENSSSCG00000034314	LSM4	95	84.328	Sus_scrofa
ENSELUG00000012821	lsm4	100	89.474	ENSTRUG00000021737	lsm4	93	89.474	Takifugu_rubripes
ENSELUG00000012821	lsm4	100	87.313	ENSTNIG00000010191	lsm4	93	88.806	Tetraodon_nigroviridis
ENSELUG00000012821	lsm4	66	98.851	ENSUAMG00000000665	LSM4	95	84.328	Ursus_americanus
ENSELUG00000012821	lsm4	66	98.851	ENSUMAG00000009013	LSM4	95	84.328	Ursus_maritimus
ENSELUG00000012821	lsm4	66	98.851	ENSVVUG00000008136	LSM4	68	84.328	Vulpes_vulpes
ENSELUG00000012821	lsm4	73	97.938	ENSXETG00000024933	lsm4	95	88.722	Xenopus_tropicalis
ENSELUG00000012821	lsm4	95	92.800	ENSXMAG00000026672	lsm4	66	92.800	Xiphophorus_maculatus