EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000012876 (Gene tree)
Gene ID: 105012739
Gene Symbol: sf3b4
Alias: chunp6902|fb36a04|wu:fb36a04
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 7315 bases
Position: chrLG10:10579931-10587245
Accession: 105012739
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000012674	RRM_1	PF00076.22	3.9e-39	1	2
ENSELUP00000012674	RRM_1	PF00076.22	3.9e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000038199	-	1758	XM_010873792	ENSELUP00000012674	403 (aa)	XP_010872094	UPI000577CE91

Gene Model

Click here to download ENSELUG00000012876's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000012876's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000012876	sf3b4	53	35.426	ENSELUG00000003614	pabpc1a	57	38.251

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000012876	sf3b4	60	97.083	ENSG00000143368	SF3B4	100	96.842	Homo_sapiens
ENSELUG00000012876	sf3b4	60	99.167	ENSAPOG00000017647	sf3b4	87	92.000	Acanthochromis_polyacanthus
ENSELUG00000012876	sf3b4	57	97.835	ENSACIG00000018455	sf3b4	68	98.261	Amphilophus_citrinellus
ENSELUG00000012876	sf3b4	60	99.167	ENSAOCG00000019801	sf3b4	87	92.000	Amphiprion_ocellaris
ENSELUG00000012876	sf3b4	60	99.167	ENSAPEG00000010365	sf3b4	87	92.000	Amphiprion_percula
ENSELUG00000012876	sf3b4	67	97.059	ENSATEG00000012844	sf3b4	87	91.453	Anabas_testudineus
ENSELUG00000012876	sf3b4	53	100.000	ENSACAG00000010019	SF3B4	55	98.690	Anolis_carolinensis
ENSELUG00000012876	sf3b4	67	95.149	ENSACLG00000014260	sf3b4	87	86.571	Astatotilapia_calliptera
ENSELUG00000012876	sf3b4	67	97.037	ENSAMXG00000008282	sf3b4	87	88.952	Astyanax_mexicanus
ENSELUG00000012876	sf3b4	63	73.228	WBGene00004723	sap-49	54	81.991	Caenorhabditis_elegans
ENSELUG00000012876	sf3b4	60	97.083	ENSCAFG00000011617	SF3B4	57	97.083	Canis_familiaris
ENSELUG00000012876	sf3b4	60	97.083	ENSCAFG00020019775	SF3B4	57	97.083	Canis_lupus_dingo
ENSELUG00000012876	sf3b4	76	58.786	ENSCHIG00000006654	-	50	74.627	Capra_hircus
ENSELUG00000012876	sf3b4	60	96.250	ENSCCAG00000021751	-	54	96.250	Cebus_capucinus
ENSELUG00000012876	sf3b4	53	100.000	ENSCPBG00000008041	SF3B4	55	98.690	Chrysemys_picta_bellii
ENSELUG00000012876	sf3b4	56	87.665	ENSCING00000002337	-	57	90.521	Ciona_intestinalis
ENSELUG00000012876	sf3b4	52	91.429	ENSCSAVG00000007809	-	88	89.697	Ciona_savignyi
ENSELUG00000012876	sf3b4	66	94.697	ENSCVAG00000005536	sf3b4	88	82.133	Cyprinodon_variegatus
ENSELUG00000012876	sf3b4	60	98.333	ENSDARG00000018574	sf3b4	88	91.761	Danio_rerio
ENSELUG00000012876	sf3b4	57	81.579	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSELUG00000012876	sf3b4	55	86.425	FBgn0015818	Spx	61	88.152	Drosophila_melanogaster
ENSELUG00000012876	sf3b4	60	97.942	ENSFHEG00000008211	sf3b4	50	87.356	Fundulus_heteroclitus
ENSELUG00000012876	sf3b4	81	76.994	ENSGMOG00000002519	sf3b4	67	98.261	Gadus_morhua
ENSELUG00000012876	sf3b4	53	100.000	ENSGALG00000013352	SF3B4	55	99.127	Gallus_gallus
ENSELUG00000012876	sf3b4	66	95.849	ENSGAFG00000010181	sf3b4	88	83.429	Gambusia_affinis
ENSELUG00000012876	sf3b4	59	99.153	ENSGACG00000003819	sf3b4	87	84.527	Gasterosteus_aculeatus
ENSELUG00000012876	sf3b4	75	69.745	ENSGGOG00000038845	-	54	89.524	Gorilla_gorilla
ENSELUG00000012876	sf3b4	67	95.149	ENSHBUG00000002028	sf3b4	87	86.571	Haplochromis_burtoni
ENSELUG00000012876	sf3b4	60	97.083	ENSHGLG00100008533	SF3B4	57	97.083	Heterocephalus_glaber_male
ENSELUG00000012876	sf3b4	56	97.357	ENSHCOG00000003014	sf3b4	57	96.943	Hippocampus_comes
ENSELUG00000012876	sf3b4	60	98.750	ENSIPUG00000012242	Sf3b4	87	90.625	Ictalurus_punctatus
ENSELUG00000012876	sf3b4	59	71.622	ENSJJAG00000022500	Sf3b4	59	72.109	Jaculus_jaculus
ENSELUG00000012876	sf3b4	66	96.629	ENSKMAG00000008154	sf3b4	89	84.571	Kryptolebias_marmoratus
ENSELUG00000012876	sf3b4	58	99.142	ENSLBEG00000026818	sf3b4	87	84.571	Labrus_bergylta
ENSELUG00000012876	sf3b4	60	95.417	ENSLACG00000004436	SF3B4	66	95.417	Latimeria_chalumnae
ENSELUG00000012876	sf3b4	58	99.138	ENSLOCG00000009048	sf3b4	54	100.000	Lepisosteus_oculatus
ENSELUG00000012876	sf3b4	89	63.361	ENSMFAG00000039067	-	58	79.263	Macaca_fascicularis
ENSELUG00000012876	sf3b4	92	60.753	ENSMNEG00000031526	-	58	78.802	Macaca_nemestrina
ENSELUG00000012876	sf3b4	60	97.917	ENSMAMG00000014692	sf3b4	88	91.168	Mastacembelus_armatus
ENSELUG00000012876	sf3b4	67	95.149	ENSMZEG00005026741	sf3b4	87	86.571	Maylandia_zebra
ENSELUG00000012876	sf3b4	53	100.000	ENSMGAG00000000653	SF3B4	55	99.127	Meleagris_gallopavo
ENSELUG00000012876	sf3b4	57	94.805	ENSMOCG00000014155	-	57	94.805	Microtus_ochrogaster
ENSELUG00000012876	sf3b4	59	99.153	ENSMMOG00000018032	sf3b4	60	99.153	Mola_mola
ENSELUG00000012876	sf3b4	67	94.796	ENSMALG00000006174	sf3b4	87	90.286	Monopterus_albus
ENSELUG00000012876	sf3b4	67	95.522	ENSNBRG00000013865	sf3b4	87	86.857	Neolamprologus_brichardi
ENSELUG00000012876	sf3b4	99	64.029	ENSNLEG00000000537	-	58	88.261	Nomascus_leucogenys
ENSELUG00000012876	sf3b4	86	59.673	ENSODEG00000008916	-	55	76.415	Octodon_degus
ENSELUG00000012876	sf3b4	75	69.279	ENSODEG00000003597	-	59	80.913	Octodon_degus
ENSELUG00000012876	sf3b4	67	94.776	ENSONIG00000002730	sf3b4	87	86.571	Oreochromis_niloticus
ENSELUG00000012876	sf3b4	65	72.180	ENSOANG00000004768	-	50	81.776	Ornithorhynchus_anatinus
ENSELUG00000012876	sf3b4	74	91.060	ENSORLG00000003062	sf3b4	59	99.130	Oryzias_latipes
ENSELUG00000012876	sf3b4	74	91.060	ENSORLG00020000687	sf3b4	58	99.130	Oryzias_latipes_hni
ENSELUG00000012876	sf3b4	74	91.060	ENSORLG00015010989	sf3b4	58	99.130	Oryzias_latipes_hsok
ENSELUG00000012876	sf3b4	58	98.707	ENSOMEG00000013694	sf3b4	58	99.130	Oryzias_melastigma
ENSELUG00000012876	sf3b4	61	79.098	ENSOARG00000007368	-	55	81.416	Ovis_aries
ENSELUG00000012876	sf3b4	75	77.070	ENSPPAG00000030024	-	59	87.083	Pan_paniscus
ENSELUG00000012876	sf3b4	75	78.618	ENSPTRG00000049727	-	60	87.500	Pan_troglodytes
ENSELUG00000012876	sf3b4	60	99.177	ENSPKIG00000020669	sf3b4	92	92.000	Paramormyrops_kingsleyae
ENSELUG00000012876	sf3b4	53	95.305	ENSPMAG00000007842	-	50	95.283	Petromyzon_marinus
ENSELUG00000012876	sf3b4	66	95.506	ENSPFOG00000005754	sf3b4	88	83.429	Poecilia_formosa
ENSELUG00000012876	sf3b4	66	95.506	ENSPLAG00000001401	sf3b4	95	84.770	Poecilia_latipinna
ENSELUG00000012876	sf3b4	66	95.506	ENSPMEG00000014452	sf3b4	50	84.286	Poecilia_mexicana
ENSELUG00000012876	sf3b4	66	95.506	ENSPREG00000011076	sf3b4	60	97.531	Poecilia_reticulata
ENSELUG00000012876	sf3b4	52	96.635	ENSPCAG00000000392	SF3B4	50	96.635	Procavia_capensis
ENSELUG00000012876	sf3b4	67	95.149	ENSPNYG00000012700	sf3b4	87	86.571	Pundamilia_nyererei
ENSELUG00000012876	sf3b4	60	98.333	ENSPNAG00000000686	sf3b4	89	88.604	Pygocentrus_nattereri
ENSELUG00000012876	sf3b4	92	61.867	ENSRROG00000028213	-	56	74.324	Rhinopithecus_roxellana
ENSELUG00000012876	sf3b4	60	98.354	ENSSFOG00015008864	sf3b4	86	93.750	Scleropages_formosus
ENSELUG00000012876	sf3b4	74	93.311	ENSSMAG00000006837	sf3b4	87	90.286	Scophthalmus_maximus
ENSELUG00000012876	sf3b4	66	97.736	ENSSDUG00000012064	sf3b4	87	92.877	Seriola_dumerili
ENSELUG00000012876	sf3b4	66	98.485	ENSSLDG00000014226	sf3b4	87	92.877	Seriola_lalandi_dorsalis
ENSELUG00000012876	sf3b4	60	99.583	ENSSPAG00000019219	sf3b4	87	90.598	Stegastes_partitus
ENSELUG00000012876	sf3b4	59	97.458	ENSTGUG00000004470	SF3B4	91	98.696	Taeniopygia_guttata
ENSELUG00000012876	sf3b4	79	88.715	ENSTRUG00000004516	sf3b4	86	84.615	Takifugu_rubripes
ENSELUG00000012876	sf3b4	58	99.149	ENSTNIG00000009156	sf3b4	85	81.322	Tetraodon_nigroviridis
ENSELUG00000012876	sf3b4	60	97.083	ENSUMAG00000003802	SF3B4	57	97.083	Ursus_maritimus
ENSELUG00000012876	sf3b4	60	97.083	ENSVVUG00000007732	-	61	97.083	Vulpes_vulpes
ENSELUG00000012876	sf3b4	55	95.536	ENSXETG00000011038	sf3b4	53	100.000	Xenopus_tropicalis
ENSELUG00000012876	sf3b4	66	95.880	ENSXCOG00000019895	sf3b4	88	84.571	Xiphophorus_couchianus
ENSELUG00000012876	sf3b4	66	96.226	ENSXMAG00000003772	sf3b4	88	83.714	Xiphophorus_maculatus