EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000012916 (Gene tree)
Gene ID: 105026208
Gene Symbol: -
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 13132 bases
Position: chrLG08:3106389-3119520
Accession: 105026208
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000034330	UPF1_Zn_bind	PF09416.10	9.1e-75	1	1
ENSELUP00000034330	ResIII	PF04851.15	9.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000021010	-	3632	XM_013134863	ENSELUP00000034330	1107 (aa)	XP_012990317	UPI000661EB9D

Gene Model

Click here to download ENSELUG00000012916's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03013	RNA transport	KEGG
els03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000012916's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000012916	-	100	93.255	ENSELUG00000020917	upf1	100	92.529

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000012916	-	100	91.585	ENSG00000005007	UPF1	100	91.667	Homo_sapiens
ENSELUG00000012916	-	100	92.266	ENSAPOG00000023773	upf1	100	92.589	Acanthochromis_polyacanthus
ENSELUG00000012916	-	100	95.491	ENSAPOG00000010916	-	100	95.491	Acanthochromis_polyacanthus
ENSELUG00000012916	-	100	91.182	ENSAMEG00000011474	UPF1	100	91.262	Ailuropoda_melanoleuca
ENSELUG00000012916	-	100	92.086	ENSACIG00000019949	upf1	100	92.716	Amphilophus_citrinellus
ENSELUG00000012916	-	93	93.907	ENSACIG00000010985	-	100	93.907	Amphilophus_citrinellus
ENSELUG00000012916	-	100	91.964	ENSAOCG00000018519	upf1	100	92.589	Amphiprion_ocellaris
ENSELUG00000012916	-	100	95.401	ENSAOCG00000006352	-	100	95.401	Amphiprion_ocellaris
ENSELUG00000012916	-	100	95.401	ENSAPEG00000006292	-	100	95.401	Amphiprion_percula
ENSELUG00000012916	-	100	91.964	ENSAPEG00000016344	upf1	100	92.589	Amphiprion_percula
ENSELUG00000012916	-	100	95.401	ENSATEG00000016606	-	100	95.401	Anabas_testudineus
ENSELUG00000012916	-	100	91.918	ENSATEG00000017867	upf1	100	92.335	Anabas_testudineus
ENSELUG00000012916	-	95	93.415	ENSAPLG00000009175	UPF1	100	93.409	Anas_platyrhynchos
ENSELUG00000012916	-	95	91.362	ENSANAG00000024107	UPF1	96	91.174	Aotus_nancymaae
ENSELUG00000012916	-	100	94.495	ENSACLG00000022630	-	100	95.217	Astatotilapia_calliptera
ENSELUG00000012916	-	100	92.086	ENSACLG00000007181	upf1	100	92.716	Astatotilapia_calliptera
ENSELUG00000012916	-	100	94.399	ENSAMXG00000042187	upf1	100	93.857	Astyanax_mexicanus
ENSELUG00000012916	-	100	91.197	ENSBTAG00000020922	UPF1	100	91.278	Bos_taurus
ENSELUG00000012916	-	89	50.805	WBGene00004880	smg-2	90	50.704	Caenorhabditis_elegans
ENSELUG00000012916	-	100	90.869	ENSCJAG00000019627	UPF1	100	90.949	Callithrix_jacchus
ENSELUG00000012916	-	100	90.957	ENSCAFG00000014578	UPF1	100	91.037	Canis_familiaris
ENSELUG00000012916	-	100	91.674	ENSCAFG00020012347	UPF1	100	91.755	Canis_lupus_dingo
ENSELUG00000012916	-	100	91.918	ENSCHIG00000011018	UPF1	100	92.000	Capra_hircus
ENSELUG00000012916	-	95	92.925	ENSTSYG00000008877	UPF1	98	92.918	Carlito_syrichta
ENSELUG00000012916	-	96	92.444	ENSCAPG00000005758	UPF1	95	93.107	Cavia_aperea
ENSELUG00000012916	-	100	92.493	ENSCPOG00000025463	UPF1	100	92.315	Cavia_porcellus
ENSELUG00000012916	-	100	91.585	ENSCCAG00000032175	UPF1	100	91.667	Cebus_capucinus
ENSELUG00000012916	-	94	93.270	ENSCATG00000040306	UPF1	97	93.264	Cercocebus_atys
ENSELUG00000012916	-	95	93.019	ENSCLAG00000004037	UPF1	99	92.351	Chinchilla_lanigera
ENSELUG00000012916	-	100	91.585	ENSCSAG00000005276	UPF1	100	91.667	Chlorocebus_sabaeus
ENSELUG00000012916	-	100	92.500	ENSCPBG00000012513	UPF1	100	92.493	Chrysemys_picta_bellii
ENSELUG00000012916	-	77	78.929	ENSCING00000021399	-	99	78.114	Ciona_intestinalis
ENSELUG00000012916	-	99	71.939	ENSCSAVG00000006533	-	99	71.825	Ciona_savignyi
ENSELUG00000012916	-	95	93.019	ENSCANG00000029819	UPF1	97	93.012	Colobus_angolensis_palliatus
ENSELUG00000012916	-	100	91.548	ENSCGRG00001021067	Upf1	100	91.095	Cricetulus_griseus_chok1gshd
ENSELUG00000012916	-	95	92.547	ENSCGRG00000013480	Upf1	98	91.974	Cricetulus_griseus_crigri
ENSELUG00000012916	-	100	87.376	ENSCSEG00000017239	upf1	100	87.286	Cynoglossus_semilaevis
ENSELUG00000012916	-	100	94.404	ENSCSEG00000016159	-	100	93.863	Cynoglossus_semilaevis
ENSELUG00000012916	-	100	93.868	ENSCVAG00000010561	upf1	100	94.590	Cyprinodon_variegatus
ENSELUG00000012916	-	100	94.490	ENSDARG00000016302	upf1	100	93.948	Danio_rerio
ENSELUG00000012916	-	95	90.481	ENSDORG00000009984	Upf1	95	89.906	Dipodomys_ordii
ENSELUG00000012916	-	85	71.822	FBgn0030354	Upf1	81	70.691	Drosophila_melanogaster
ENSELUG00000012916	-	54	85.410	ENSEBUG00000010069	upf1	96	85.738	Eptatretus_burgeri
ENSELUG00000012916	-	100	91.829	ENSEASG00005006549	UPF1	100	91.911	Equus_asinus_asinus
ENSELUG00000012916	-	100	91.829	ENSECAG00000010639	UPF1	100	91.911	Equus_caballus
ENSELUG00000012916	-	100	90.957	ENSFCAG00000009757	UPF1	100	91.037	Felis_catus
ENSELUG00000012916	-	95	93.945	ENSFALG00000009312	UPF1	96	93.939	Ficedula_albicollis
ENSELUG00000012916	-	95	92.925	ENSFDAG00000014816	UPF1	99	92.257	Fukomys_damarensis
ENSELUG00000012916	-	87	94.349	ENSFHEG00000016276	-	96	94.349	Fundulus_heteroclitus
ENSELUG00000012916	-	100	89.750	ENSFHEG00000006428	upf1	100	89.394	Fundulus_heteroclitus
ENSELUG00000012916	-	100	94.286	ENSGMOG00000007541	upf1	100	94.107	Gadus_morhua
ENSELUG00000012916	-	100	91.925	ENSGALG00000003220	UPF1	100	91.918	Gallus_gallus
ENSELUG00000012916	-	63	94.286	ENSGAFG00000015443	-	85	94.286	Gambusia_affinis
ENSELUG00000012916	-	100	94.500	ENSGAFG00000004831	upf1	100	94.500	Gambusia_affinis
ENSELUG00000012916	-	100	92.487	ENSGAGG00000022217	UPF1	100	92.569	Gopherus_agassizii
ENSELUG00000012916	-	95	93.810	ENSGGOG00000002608	UPF1	99	93.804	Gorilla_gorilla
ENSELUG00000012916	-	90	87.356	ENSHBUG00000014694	upf1	99	98.592	Haplochromis_burtoni
ENSELUG00000012916	-	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSELUG00000012916	-	100	90.694	ENSHGLG00000010900	UPF1	100	90.246	Heterocephalus_glaber_female
ENSELUG00000012916	-	95	91.132	ENSHGLG00100005904	UPF1	96	90.557	Heterocephalus_glaber_male
ENSELUG00000012916	-	100	93.959	ENSHCOG00000008918	upf1	100	94.500	Hippocampus_comes
ENSELUG00000012916	-	100	94.580	ENSIPUG00000005108	UPF1	100	93.948	Ictalurus_punctatus
ENSELUG00000012916	-	100	91.585	ENSSTOG00000009196	UPF1	100	91.046	Ictidomys_tridecemlineatus
ENSELUG00000012916	-	100	90.813	ENSJJAG00000023151	Upf1	100	90.363	Jaculus_jaculus
ENSELUG00000012916	-	100	94.950	ENSKMAG00000004962	upf1	100	94.950	Kryptolebias_marmoratus
ENSELUG00000012916	-	100	94.950	ENSLBEG00000027848	-	100	94.950	Labrus_bergylta
ENSELUG00000012916	-	100	92.143	ENSLBEG00000014862	upf1	100	92.321	Labrus_bergylta
ENSELUG00000012916	-	63	95.136	ENSLACG00000008482	UPF1	100	95.136	Latimeria_chalumnae
ENSELUG00000012916	-	100	95.126	ENSLOCG00000002072	upf1	100	95.126	Lepisosteus_oculatus
ENSELUG00000012916	-	100	90.677	ENSLAFG00000014963	UPF1	100	90.757	Loxodonta_africana
ENSELUG00000012916	-	100	91.512	ENSMFAG00000037748	UPF1	100	91.593	Macaca_fascicularis
ENSELUG00000012916	-	100	91.270	ENSMMUG00000023286	UPF1	100	91.350	Macaca_mulatta
ENSELUG00000012916	-	100	91.512	ENSMNEG00000000046	UPF1	100	91.593	Macaca_nemestrina
ENSELUG00000012916	-	95	93.019	ENSMLEG00000028404	UPF1	99	93.012	Mandrillus_leucophaeus
ENSELUG00000012916	-	100	94.500	ENSMAMG00000006231	-	100	95.401	Mastacembelus_armatus
ENSELUG00000012916	-	100	92.157	ENSMAMG00000006229	upf1	100	92.335	Mastacembelus_armatus
ENSELUG00000012916	-	100	92.000	ENSMZEG00005003489	upf1	100	92.838	Maylandia_zebra
ENSELUG00000012916	-	100	94.495	ENSMZEG00005016386	-	100	95.217	Maylandia_zebra
ENSELUG00000012916	-	95	92.931	ENSMGAG00000004745	UPF1	100	92.925	Meleagris_gallopavo
ENSELUG00000012916	-	95	92.547	ENSMAUG00000011398	Upf1	95	91.974	Mesocricetus_auratus
ENSELUG00000012916	-	100	91.585	ENSMICG00000001659	UPF1	100	91.667	Microcebus_murinus
ENSELUG00000012916	-	100	90.829	ENSMOCG00000005699	Upf1	100	90.468	Microtus_ochrogaster
ENSELUG00000012916	-	100	92.683	ENSMMOG00000007881	upf1	100	92.502	Mola_mola
ENSELUG00000012916	-	95	92.688	ENSMMOG00000007537	-	99	92.688	Mola_mola
ENSELUG00000012916	-	100	90.718	ENSMODG00000003689	UPF1	100	90.885	Monodelphis_domestica
ENSELUG00000012916	-	100	93.890	ENSMALG00000018100	-	100	93.890	Monopterus_albus
ENSELUG00000012916	-	100	92.412	ENSMALG00000000144	upf1	100	92.412	Monopterus_albus
ENSELUG00000012916	-	100	91.459	MGP_CAROLIEiJ_G0031142	Upf1	100	91.006	Mus_caroli
ENSELUG00000012916	-	100	91.459	ENSMUSG00000058301	Upf1	100	91.006	Mus_musculus
ENSELUG00000012916	-	100	91.459	MGP_PahariEiJ_G0021607	Upf1	100	91.006	Mus_pahari
ENSELUG00000012916	-	100	91.459	MGP_SPRETEiJ_G0032260	Upf1	100	91.006	Mus_spretus
ENSELUG00000012916	-	100	91.674	ENSMPUG00000015516	UPF1	100	91.755	Mustela_putorius_furo
ENSELUG00000012916	-	99	91.644	ENSMLUG00000012122	UPF1	99	91.726	Myotis_lucifugus
ENSELUG00000012916	-	100	90.501	ENSNGAG00000024107	Upf1	100	90.053	Nannospalax_galili
ENSELUG00000012916	-	100	91.036	ENSNBRG00000022069	-	100	94.300	Neolamprologus_brichardi
ENSELUG00000012916	-	100	90.386	ENSNBRG00000000670	upf1	100	91.015	Neolamprologus_brichardi
ENSELUG00000012916	-	95	87.264	ENSNLEG00000006062	UPF1	99	87.252	Nomascus_leucogenys
ENSELUG00000012916	-	83	88.327	ENSMEUG00000014146	-	83	88.304	Notamacropus_eugenii
ENSELUG00000012916	-	95	87.238	ENSOPRG00000014018	UPF1	99	87.226	Ochotona_princeps
ENSELUG00000012916	-	100	91.957	ENSODEG00000012426	UPF1	100	91.324	Octodon_degus
ENSELUG00000012916	-	100	92.000	ENSONIG00000010452	upf1	100	92.838	Oreochromis_niloticus
ENSELUG00000012916	-	100	94.495	ENSONIG00000012729	-	100	95.217	Oreochromis_niloticus
ENSELUG00000012916	-	100	91.109	ENSOANG00000004568	UPF1	100	90.325	Ornithorhynchus_anatinus
ENSELUG00000012916	-	100	94.500	ENSORLG00000008453	upf1	100	94.500	Oryzias_latipes
ENSELUG00000012916	-	100	94.414	ENSORLG00020014758	upf1	100	94.414	Oryzias_latipes_hni
ENSELUG00000012916	-	100	94.414	ENSORLG00015010165	upf1	100	94.414	Oryzias_latipes_hsok
ENSELUG00000012916	-	100	94.770	ENSOMEG00000003665	upf1	100	94.770	Oryzias_melastigma
ENSELUG00000012916	-	100	91.674	ENSOGAG00000012866	UPF1	100	91.755	Otolemur_garnettii
ENSELUG00000012916	-	96	89.954	ENSOARG00000010739	UPF1	100	89.762	Ovis_aries
ENSELUG00000012916	-	95	93.019	ENSPPAG00000043884	UPF1	96	93.012	Pan_paniscus
ENSELUG00000012916	-	100	90.957	ENSPPRG00000023470	UPF1	100	91.037	Panthera_pardus
ENSELUG00000012916	-	95	91.730	ENSPTIG00000010159	UPF1	99	91.722	Panthera_tigris_altaica
ENSELUG00000012916	-	100	91.512	ENSPTRG00000010721	UPF1	100	91.593	Pan_troglodytes
ENSELUG00000012916	-	100	91.512	ENSPANG00000008847	UPF1	100	91.593	Papio_anubis
ENSELUG00000012916	-	91	94.395	ENSPKIG00000006069	upf1	96	95.314	Paramormyrops_kingsleyae
ENSELUG00000012916	-	70	92.894	ENSPSIG00000009491	UPF1	100	92.885	Pelodiscus_sinensis
ENSELUG00000012916	-	100	90.549	ENSPMGG00000017327	upf1	100	90.378	Periophthalmus_magnuspinnatus
ENSELUG00000012916	-	100	90.829	ENSPEMG00000001085	Upf1	100	90.380	Peromyscus_maniculatus_bairdii
ENSELUG00000012916	-	100	87.085	ENSPMAG00000001206	upf1	100	86.649	Petromyzon_marinus
ENSELUG00000012916	-	100	91.933	ENSPCIG00000006156	UPF1	100	92.014	Phascolarctos_cinereus
ENSELUG00000012916	-	100	91.121	ENSPLAG00000018155	-	100	90.673	Poecilia_latipinna
ENSELUG00000012916	-	100	94.500	ENSPLAG00000016232	-	100	94.409	Poecilia_latipinna
ENSELUG00000012916	-	100	94.590	ENSPMEG00000016319	-	100	94.500	Poecilia_mexicana
ENSELUG00000012916	-	100	91.516	ENSPMEG00000011443	-	100	91.147	Poecilia_mexicana
ENSELUG00000012916	-	100	94.319	ENSPREG00000011247	-	100	94.229	Poecilia_reticulata
ENSELUG00000012916	-	100	91.316	ENSPREG00000009940	upf1	100	90.958	Poecilia_reticulata
ENSELUG00000012916	-	100	85.852	ENSPPYG00000009752	UPF1	100	85.940	Pongo_abelii
ENSELUG00000012916	-	75	98.990	ENSPCAG00000012962	UPF1	76	98.990	Procavia_capensis
ENSELUG00000012916	-	100	91.350	ENSPCOG00000023813	UPF1	100	91.431	Propithecus_coquereli
ENSELUG00000012916	-	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSELUG00000012916	-	100	92.000	ENSPNYG00000003694	upf1	100	92.838	Pundamilia_nyererei
ENSELUG00000012916	-	100	94.495	ENSPNYG00000016731	-	100	95.217	Pundamilia_nyererei
ENSELUG00000012916	-	100	94.399	ENSPNAG00000025614	upf1	100	93.857	Pygocentrus_nattereri
ENSELUG00000012916	-	100	91.459	ENSRNOG00000020134	Upf1	100	91.006	Rattus_norvegicus
ENSELUG00000012916	-	95	90.660	ENSRBIG00000013894	UPF1	98	93.601	Rhinopithecus_bieti
ENSELUG00000012916	-	95	93.019	ENSRROG00000040935	UPF1	98	93.601	Rhinopithecus_roxellana
ENSELUG00000012916	-	73	57.090	YMR080C	NAM7	82	57.090	Saccharomyces_cerevisiae
ENSELUG00000012916	-	94	93.270	ENSSBOG00000023632	UPF1	96	93.264	Saimiri_boliviensis_boliviensis
ENSELUG00000012916	-	95	93.032	ENSSHAG00000010499	UPF1	100	93.025	Sarcophilus_harrisii
ENSELUG00000012916	-	100	95.668	ENSSFOG00015021095	upf1	100	95.668	Scleropages_formosus
ENSELUG00000012916	-	100	91.696	ENSSMAG00000005055	upf1	100	91.786	Scophthalmus_maximus
ENSELUG00000012916	-	100	95.672	ENSSMAG00000021018	-	100	95.672	Scophthalmus_maximus
ENSELUG00000012916	-	100	92.335	ENSSDUG00000013320	upf1	100	92.513	Seriola_dumerili
ENSELUG00000012916	-	100	95.582	ENSSDUG00000009629	-	100	95.582	Seriola_dumerili
ENSELUG00000012916	-	100	92.536	ENSSLDG00000020868	upf1	100	92.735	Seriola_lalandi_dorsalis
ENSELUG00000012916	-	100	95.582	ENSSLDG00000006878	-	100	95.582	Seriola_lalandi_dorsalis
ENSELUG00000012916	-	100	92.232	ENSSPUG00000010538	UPF1	100	92.315	Sphenodon_punctatus
ENSELUG00000012916	-	100	94.950	ENSSPAG00000011521	-	100	94.950	Stegastes_partitus
ENSELUG00000012916	-	100	90.893	ENSSPAG00000000003	upf1	100	90.433	Stegastes_partitus
ENSELUG00000012916	-	100	91.829	ENSSSCG00000039301	UPF1	99	93.720	Sus_scrofa
ENSELUG00000012916	-	82	86.561	ENSTGUG00000001057	UPF1	100	90.455	Taeniopygia_guttata
ENSELUG00000012916	-	100	93.868	ENSTRUG00000005131	-	100	93.147	Takifugu_rubripes
ENSELUG00000012916	-	100	92.412	ENSTRUG00000000150	upf1	100	92.412	Takifugu_rubripes
ENSELUG00000012916	-	100	88.277	ENSTTRG00000011544	UPF1	100	88.267	Tursiops_truncatus
ENSELUG00000012916	-	100	91.674	ENSUAMG00000007093	UPF1	100	91.755	Ursus_americanus
ENSELUG00000012916	-	95	93.821	ENSUMAG00000006652	UPF1	99	94.245	Ursus_maritimus
ENSELUG00000012916	-	100	91.674	ENSVVUG00000007797	UPF1	100	91.755	Vulpes_vulpes
ENSELUG00000012916	-	100	79.422	ENSXETG00000013602	upf1	100	79.422	Xenopus_tropicalis
ENSELUG00000012916	-	97	91.121	ENSXCOG00000015275	-	96	91.028	Xiphophorus_couchianus
ENSELUG00000012916	-	94	94.509	ENSXCOG00000005764	-	99	94.509	Xiphophorus_couchianus
ENSELUG00000012916	-	100	94.500	ENSXMAG00000002540	-	100	94.500	Xiphophorus_maculatus
ENSELUG00000012916	-	100	91.418	ENSXMAG00000001703	-	100	91.328	Xiphophorus_maculatus