EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000013139 (Gene tree)
Gene ID: 105029847
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 12608 bases
Position: chrAZJR03000966.1:507118-519725
Accession: 105029847
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000034500	RNA_bind	PF08675.11	8.7e-33	1	1
ENSELUP00000034535	RNA_bind	PF08675.11	9.2e-33	1	1
ENSELUP00000034500	CAF1	PF04857.20	3.4e-89	1	1
ENSELUP00000034535	CAF1	PF04857.20	6.3e-89	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000021408	-	6736	XM_010903404	ENSELUP00000034535	754 (aa)	XP_010901706	UPI000577A1F9
ENSELUT00000021315	-	6673	-	ENSELUP00000034500	733 (aa)	-	-

Gene Model

Click here to download ENSELUG00000013139's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000013139's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000013139	parn	77	72.344	ENSG00000140694	PARN	91	79.661	Homo_sapiens
ENSELUG00000013139	parn	75	72.384	ENSAMEG00000011208	PARN	90	72.384	Ailuropoda_melanoleuca
ENSELUG00000013139	parn	79	73.488	ENSACIG00000000619	parn	100	73.488	Amphilophus_citrinellus
ENSELUG00000013139	parn	90	74.640	ENSAOCG00000003465	parn	100	74.496	Amphiprion_ocellaris
ENSELUG00000013139	parn	63	84.551	ENSAPEG00000010661	parn	93	83.197	Amphiprion_percula
ENSELUG00000013139	parn	90	76.488	ENSATEG00000004661	parn	100	76.343	Anabas_testudineus
ENSELUG00000013139	parn	74	73.638	ENSAPLG00000013914	PARN	91	72.837	Anas_platyrhynchos
ENSELUG00000013139	parn	75	74.055	ENSACAG00000004973	PARN	95	70.305	Anolis_carolinensis
ENSELUG00000013139	parn	77	72.250	ENSANAG00000031516	PARN	91	79.661	Aotus_nancymaae
ENSELUG00000013139	parn	90	75.977	ENSACLG00000004742	parn	100	75.687	Astatotilapia_calliptera
ENSELUG00000013139	parn	90	72.701	ENSAMXG00000012390	parn	98	76.382	Astyanax_mexicanus
ENSELUG00000013139	parn	75	69.640	ENSBTAG00000018097	PARN	95	68.829	Bos_taurus
ENSELUG00000013139	parn	77	72.804	ENSCJAG00000015866	PARN	91	79.661	Callithrix_jacchus
ENSELUG00000013139	parn	74	72.145	ENSCAFG00000018795	PARN	89	72.145	Canis_familiaris
ENSELUG00000013139	parn	74	72.145	ENSCAFG00020024126	PARN	89	72.145	Canis_lupus_dingo
ENSELUG00000013139	parn	77	71.189	ENSCHIG00000018143	PARN	95	69.854	Capra_hircus
ENSELUG00000013139	parn	63	49.898	ENSCAPG00000007984	PARN	79	49.898	Cavia_aperea
ENSELUG00000013139	parn	75	71.256	ENSCPOG00000002263	PARN	90	71.256	Cavia_porcellus
ENSELUG00000013139	parn	77	72.804	ENSCCAG00000030367	PARN	91	79.661	Cebus_capucinus
ENSELUG00000013139	parn	71	76.636	ENSCATG00000041368	PARN	95	76.636	Cercocebus_atys
ENSELUG00000013139	parn	75	72.384	ENSCLAG00000015406	PARN	90	72.384	Chinchilla_lanigera
ENSELUG00000013139	parn	77	72.175	ENSCSAG00000008142	PARN	91	72.175	Chlorocebus_sabaeus
ENSELUG00000013139	parn	74	56.228	ENSCHOG00000007014	PARN	90	56.228	Choloepus_hoffmanni
ENSELUG00000013139	parn	67	73.745	ENSCPBG00000006609	PARN	89	73.745	Chrysemys_picta_bellii
ENSELUG00000013139	parn	68	40.824	ENSCING00000010142	-	99	40.824	Ciona_intestinalis
ENSELUG00000013139	parn	77	61.653	ENSCANG00000028849	-	88	79.661	Colobus_angolensis_palliatus
ENSELUG00000013139	parn	75	71.853	ENSCGRG00001012096	Parn	90	71.853	Cricetulus_griseus_chok1gshd
ENSELUG00000013139	parn	75	71.853	ENSCGRG00000004939	Parn	90	71.853	Cricetulus_griseus_crigri
ENSELUG00000013139	parn	90	72.478	ENSCSEG00000002064	parn	100	72.727	Cynoglossus_semilaevis
ENSELUG00000013139	parn	90	74.348	ENSCVAG00000014848	parn	100	73.585	Cyprinodon_variegatus
ENSELUG00000013139	parn	90	68.650	ENSDARG00000102634	parn	100	68.795	Danio_rerio
ENSELUG00000013139	parn	75	73.230	ENSDNOG00000000833	PARN	94	77.009	Dasypus_novemcinctus
ENSELUG00000013139	parn	55	73.764	ENSETEG00000014828	-	69	73.764	Echinops_telfairi
ENSELUG00000013139	parn	75	72.727	ENSEASG00005011400	PARN	90	72.727	Equus_asinus_asinus
ENSELUG00000013139	parn	75	72.899	ENSECAG00000017792	PARN	90	72.899	Equus_caballus
ENSELUG00000013139	parn	56	83.333	ENSEEUG00000010370	PARN	69	83.333	Erinaceus_europaeus
ENSELUG00000013139	parn	77	71.477	ENSFCAG00000044961	PARN	89	77.966	Felis_catus
ENSELUG00000013139	parn	76	71.773	ENSFALG00000003911	PARN	90	71.945	Ficedula_albicollis
ENSELUG00000013139	parn	77	70.370	ENSFDAG00000009234	PARN	92	70.370	Fukomys_damarensis
ENSELUG00000013139	parn	84	69.290	ENSFHEG00000013738	parn	92	93.220	Fundulus_heteroclitus
ENSELUG00000013139	parn	73	83.152	ENSGMOG00000003231	parn	99	83.853	Gadus_morhua
ENSELUG00000013139	parn	81	68.878	ENSGALG00000003091	PARN	99	69.036	Gallus_gallus
ENSELUG00000013139	parn	90	73.585	ENSGAFG00000011061	parn	100	73.768	Gambusia_affinis
ENSELUG00000013139	parn	76	79.688	ENSGACG00000019501	parn	96	77.592	Gasterosteus_aculeatus
ENSELUG00000013139	parn	77	72.344	ENSGGOG00000025224	PARN	92	79.661	Gorilla_gorilla
ENSELUG00000013139	parn	90	75.797	ENSHBUG00000017906	parn	100	75.507	Haplochromis_burtoni
ENSELUG00000013139	parn	75	71.256	ENSHGLG00000010886	PARN	90	71.256	Heterocephalus_glaber_female
ENSELUG00000013139	parn	75	71.256	ENSHGLG00100014659	PARN	90	71.256	Heterocephalus_glaber_male
ENSELUG00000013139	parn	72	78.165	ENSHCOG00000008683	parn	93	78.165	Hippocampus_comes
ENSELUG00000013139	parn	90	62.857	ENSIPUG00000012401	parn	100	63.063	Ictalurus_punctatus
ENSELUG00000013139	parn	71	76.075	ENSSTOG00000007519	PARN	84	76.075	Ictidomys_tridecemlineatus
ENSELUG00000013139	parn	74	72.438	ENSJJAG00000023049	Parn	90	72.438	Jaculus_jaculus
ENSELUG00000013139	parn	90	74.311	ENSKMAG00000009462	parn	100	74.311	Kryptolebias_marmoratus
ENSELUG00000013139	parn	84	79.030	ENSLBEG00000009167	parn	98	79.463	Labrus_bergylta
ENSELUG00000013139	parn	66	75.348	ENSLACG00000004207	PARN	100	74.468	Latimeria_chalumnae
ENSELUG00000013139	parn	90	70.216	ENSLOCG00000000715	parn	100	70.546	Lepisosteus_oculatus
ENSELUG00000013139	parn	75	73.438	ENSLAFG00000015036	PARN	90	73.438	Loxodonta_africana
ENSELUG00000013139	parn	77	69.088	ENSMFAG00000044852	PARN	88	79.661	Macaca_fascicularis
ENSELUG00000013139	parn	77	72.466	ENSMMUG00000018849	PARN	88	79.661	Macaca_mulatta
ENSELUG00000013139	parn	77	72.466	ENSMNEG00000045108	PARN	88	79.661	Macaca_nemestrina
ENSELUG00000013139	parn	77	72.297	ENSMLEG00000031743	PARN	88	79.661	Mandrillus_leucophaeus
ENSELUG00000013139	parn	90	76.879	ENSMAMG00000006939	parn	100	76.301	Mastacembelus_armatus
ENSELUG00000013139	parn	90	75.977	ENSMZEG00005013590	parn	100	75.687	Maylandia_zebra
ENSELUG00000013139	parn	77	68.386	ENSMGAG00000001004	PARN	98	66.297	Meleagris_gallopavo
ENSELUG00000013139	parn	74	66.205	ENSMAUG00000008025	Parn	89	66.205	Mesocricetus_auratus
ENSELUG00000013139	parn	54	32.877	ENSMAUG00000012298	Pnldc1	85	32.877	Mesocricetus_auratus
ENSELUG00000013139	parn	77	71.886	ENSMICG00000016053	PARN	91	77.966	Microcebus_murinus
ENSELUG00000013139	parn	65	76.113	ENSMOCG00000022211	Parn	100	76.113	Microtus_ochrogaster
ENSELUG00000013139	parn	71	85.934	ENSMMOG00000011333	parn	88	85.934	Mola_mola
ENSELUG00000013139	parn	65	79.435	ENSMODG00000004915	PARN	99	79.435	Monodelphis_domestica
ENSELUG00000013139	parn	86	75.643	ENSMALG00000019426	parn	94	84.058	Monopterus_albus
ENSELUG00000013139	parn	75	71.429	MGP_CAROLIEiJ_G0020466	Parn	90	71.429	Mus_caroli
ENSELUG00000013139	parn	75	71.280	ENSMUSG00000022685	Parn	100	74.390	Mus_musculus
ENSELUG00000013139	parn	75	71.429	MGP_PahariEiJ_G0016172	Parn	90	71.429	Mus_pahari
ENSELUG00000013139	parn	75	71.280	MGP_SPRETEiJ_G0021361	Parn	90	71.280	Mus_spretus
ENSELUG00000013139	parn	71	77.196	ENSMPUG00000014464	PARN	83	77.196	Mustela_putorius_furo
ENSELUG00000013139	parn	65	77.935	ENSMLUG00000005414	PARN	100	77.935	Myotis_lucifugus
ENSELUG00000013139	parn	73	81.227	ENSNBRG00000006805	parn	94	81.227	Neolamprologus_brichardi
ENSELUG00000013139	parn	77	72.222	ENSNLEG00000010241	PARN	91	79.661	Nomascus_leucogenys
ENSELUG00000013139	parn	70	55.303	ENSMEUG00000008178	-	83	55.303	Notamacropus_eugenii
ENSELUG00000013139	parn	73	68.028	ENSOPRG00000012187	PARN	89	68.028	Ochotona_princeps
ENSELUG00000013139	parn	71	69.331	ENSODEG00000001617	PARN	85	69.331	Octodon_degus
ENSELUG00000013139	parn	90	75.797	ENSONIG00000000151	parn	100	75.797	Oreochromis_niloticus
ENSELUG00000013139	parn	70	76.316	ENSOCUG00000000322	PARN	83	76.316	Oryctolagus_cuniculus
ENSELUG00000013139	parn	90	72.661	ENSORLG00020010313	parn	100	72.953	Oryzias_latipes_hni
ENSELUG00000013139	parn	90	72.368	ENSORLG00015000300	parn	100	72.661	Oryzias_latipes_hsok
ENSELUG00000013139	parn	90	72.515	ENSOMEG00000019555	parn	100	72.328	Oryzias_melastigma
ENSELUG00000013139	parn	65	76.566	ENSOGAG00000014626	PARN	100	76.566	Otolemur_garnettii
ENSELUG00000013139	parn	65	78.543	ENSOARG00000007574	PARN	100	78.543	Ovis_aries
ENSELUG00000013139	parn	77	72.344	ENSPPAG00000031438	PARN	91	79.661	Pan_paniscus
ENSELUG00000013139	parn	77	71.477	ENSPPRG00000018583	PARN	89	77.966	Panthera_pardus
ENSELUG00000013139	parn	77	71.477	ENSPTIG00000012135	PARN	89	77.966	Panthera_tigris_altaica
ENSELUG00000013139	parn	77	72.175	ENSPTRG00000007792	PARN	91	79.661	Pan_troglodytes
ENSELUG00000013139	parn	77	69.764	ENSPANG00000020099	PARN	88	79.661	Papio_anubis
ENSELUG00000013139	parn	90	69.504	ENSPKIG00000022807	parn	90	74.956	Paramormyrops_kingsleyae
ENSELUG00000013139	parn	75	74.957	ENSPSIG00000014804	PARN	90	74.957	Pelodiscus_sinensis
ENSELUG00000013139	parn	81	73.366	ENSPMGG00000014431	parn	84	73.693	Periophthalmus_magnuspinnatus
ENSELUG00000013139	parn	74	70.370	ENSPEMG00000018439	Parn	89	70.370	Peromyscus_maniculatus_bairdii
ENSELUG00000013139	parn	68	68.411	ENSPMAG00000003956	parn	98	68.411	Petromyzon_marinus
ENSELUG00000013139	parn	56	71.429	ENSPCIG00000001259	PARN	91	79.661	Phascolarctos_cinereus
ENSELUG00000013139	parn	90	73.217	ENSPFOG00000012823	parn	100	73.401	Poecilia_formosa
ENSELUG00000013139	parn	90	73.362	ENSPLAG00000006395	parn	100	73.547	Poecilia_latipinna
ENSELUG00000013139	parn	90	73.362	ENSPMEG00000007711	parn	100	73.547	Poecilia_mexicana
ENSELUG00000013139	parn	90	73.508	ENSPREG00000000147	parn	100	73.692	Poecilia_reticulata
ENSELUG00000013139	parn	77	71.886	ENSPPYG00000007123	PARN	91	71.886	Pongo_abelii
ENSELUG00000013139	parn	71	63.818	ENSPCAG00000001741	PARN	90	63.818	Procavia_capensis
ENSELUG00000013139	parn	75	70.121	ENSPCOG00000019292	PARN	91	77.966	Propithecus_coquereli
ENSELUG00000013139	parn	75	69.191	ENSPVAG00000002547	PARN	95	67.162	Pteropus_vampyrus
ENSELUG00000013139	parn	90	75.762	ENSPNYG00000006835	parn	100	75.472	Pundamilia_nyererei
ENSELUG00000013139	parn	84	71.317	ENSPNAG00000018905	parn	100	71.160	Pygocentrus_nattereri
ENSELUG00000013139	parn	74	72.174	ENSRNOG00000002912	Parn	98	74.747	Rattus_norvegicus
ENSELUG00000013139	parn	77	70.946	ENSSBOG00000034726	PARN	88	79.661	Saimiri_boliviensis_boliviensis
ENSELUG00000013139	parn	55	78.177	ENSSHAG00000008493	PARN	93	78.177	Sarcophilus_harrisii
ENSELUG00000013139	parn	90	71.879	ENSSFOG00015014165	parn	98	76.650	Scleropages_formosus
ENSELUG00000013139	parn	90	74.006	ENSSMAG00000000685	parn	100	74.574	Scophthalmus_maximus
ENSELUG00000013139	parn	90	76.734	ENSSDUG00000014555	parn	100	76.012	Seriola_dumerili
ENSELUG00000013139	parn	57	79.493	ENSSARG00000014339	PARN	75	79.493	Sorex_araneus
ENSELUG00000013139	parn	75	74.093	ENSSPUG00000007719	PARN	90	74.093	Sphenodon_punctatus
ENSELUG00000013139	parn	90	76.522	ENSSPAG00000007095	parn	100	76.556	Stegastes_partitus
ENSELUG00000013139	parn	75	73.024	ENSSSCG00000007878	PARN	80	73.929	Sus_scrofa
ENSELUG00000013139	parn	74	73.286	ENSTGUG00000004971	PARN	96	69.722	Taeniopygia_guttata
ENSELUG00000013139	parn	75	81.228	ENSTNIG00000008252	parn	90	81.404	Tetraodon_nigroviridis
ENSELUG00000013139	parn	69	59.294	ENSTBEG00000010407	PARN	91	59.294	Tupaia_belangeri
ENSELUG00000013139	parn	64	78.189	ENSTTRG00000002843	PARN	77	78.189	Tursiops_truncatus
ENSELUG00000013139	parn	58	69.037	ENSUAMG00000008283	PARN	94	65.367	Ursus_americanus
ENSELUG00000013139	parn	75	72.680	ENSUMAG00000004527	PARN	90	72.680	Ursus_maritimus
ENSELUG00000013139	parn	74	70.455	ENSVPAG00000008968	PARN	93	70.455	Vicugna_pacos
ENSELUG00000013139	parn	74	72.491	ENSVVUG00000019509	PARN	89	72.491	Vulpes_vulpes
ENSELUG00000013139	parn	75	71.993	ENSXETG00000010994	parn	99	76.336	Xenopus_tropicalis
ENSELUG00000013139	parn	79	75.541	ENSXCOG00000015990	parn	100	75.914	Xiphophorus_couchianus
ENSELUG00000013139	parn	90	73.692	ENSXMAG00000014783	parn	100	73.692	Xiphophorus_maculatus