EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000013506 (Gene tree)
Gene ID: 105026339
Gene Symbol: SRSF6 (1 of many)
Alias: fa12h12|sfrs6a|wu:fa12h12|wu:fa13e06|zgc:63770
Full Name: serine/arginine-rich splicing factor 6
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 7941 bases
Position: chrLG12:31354771-31362711
Accession: 105026339
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000013209	RRM_1	PF00076.22	4.4e-31	1	2
ENSELUP00000013209	RRM_1	PF00076.22	4.4e-31	2	2
ENSELUP00000013229	RRM_1	PF00076.22	6.5e-31	1	2
ENSELUP00000013229	RRM_1	PF00076.22	6.5e-31	2	2
ENSELUP00000034761	RRM_1	PF00076.22	7e-28	1	2
ENSELUP00000034761	RRM_1	PF00076.22	7e-28	2	2
ENSELUP00000013200	RRM_1	PF00076.22	9.6e-17	1	1
ENSELUP00000013176	RRM_1	PF00076.22	1.5e-12	1	1
ENSELUP00000013185	RRM_1	PF00076.22	1.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000021683	SRSF6 (1 of many)-202	882	-	ENSELUP00000013209	293 (aa)	-	-
ENSELUT00000038416	SRSF6 (1 of many)-206	753	-	ENSELUP00000013185	250 (aa)	-	-
ENSELUT00000038401	SRSF6 (1 of many)-205	753	-	ENSELUP00000013176	250 (aa)	-	-
ENSELUT00000021720	SRSF6 (1 of many)-203	999	XM_010897734	ENSELUP00000013229	332 (aa)	XP_010896036	-
ENSELUT00000021804	SRSF6 (1 of many)-204	858	-	ENSELUP00000034761	285 (aa)	-	-
ENSELUT00000021676	SRSF6 (1 of many)-201	339	-	ENSELUP00000013200	112 (aa)	-	-

Gene Model

Click here to download ENSELUG00000013506's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03040	Spliceosome	KEGG
els05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000013506's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000013506	SRSF6	80	86.022	ENSELUG00000024182	SRSF6	97	82.828
ENSELUG00000013506	SRSF6	62	44.595	ENSELUG00000021669	srsf9	66	42.614
ENSELUG00000013506	SRSF6	98	52.649	ENSELUG00000017551	srsf4	95	63.636
ENSELUG00000013506	SRSF6	62	68.116	ENSELUG00000019852	srsf5b	85	53.103
ENSELUG00000013506	SRSF6	61	31.579	ENSELUG00000004652	-	65	33.708
ENSELUG00000013506	SRSF6	84	35.857	ENSELUG00000018267	pigs	65	46.199
ENSELUG00000013506	SRSF6	62	47.297	ENSELUG00000021646	srsf1a	64	45.143
ENSELUG00000013506	SRSF6	67	46.835	ENSELUG00000018155	srsf7b	57	46.835
ENSELUG00000013506	SRSF6	54	32.258	ENSELUG00000015350	-	68	32.258
ENSELUG00000013506	SRSF6	64	45.333	ENSELUG00000016922	srsf7a	56	44.872
ENSELUG00000013506	SRSF6	61	31.579	ENSELUG00000004675	-	65	33.684
ENSELUG00000013506	SRSF6	62	45.946	ENSELUG00000012644	SRSF9	66	42.197
ENSELUG00000013506	SRSF6	67	46.154	ENSELUG00000002390	srsf3a	62	38.679
ENSELUG00000013506	SRSF6	61	72.059	ENSELUG00000020439	srsf5a	62	61.458
ENSELUG00000013506	SRSF6	68	44.304	ENSELUG00000014357	SRSF3	58	38.947

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000013506	SRSF6	88	77.778	ENSG00000124193	SRSF6	73	77.778	Homo_sapiens
ENSELUG00000013506	SRSF6	70	92.308	ENSAPOG00000016635	-	84	83.824	Acanthochromis_polyacanthus
ENSELUG00000013506	SRSF6	63	65.591	ENSAMEG00000003710	SRSF6	92	53.750	Ailuropoda_melanoleuca
ENSELUG00000013506	SRSF6	95	75.175	ENSACIG00000020091	-	95	82.677	Amphilophus_citrinellus
ENSELUG00000013506	SRSF6	91	78.521	ENSACIG00000023658	-	91	77.474	Amphilophus_citrinellus
ENSELUG00000013506	SRSF6	78	87.356	ENSAOCG00000004309	-	91	70.990	Amphiprion_ocellaris
ENSELUG00000013506	SRSF6	70	92.308	ENSAOCG00000019438	-	73	92.771	Amphiprion_ocellaris
ENSELUG00000013506	SRSF6	81	85.714	ENSAPEG00000020746	-	100	63.051	Amphiprion_percula
ENSELUG00000013506	SRSF6	82	89.130	ENSAPEG00000013086	-	53	88.525	Amphiprion_percula
ENSELUG00000013506	SRSF6	79	85.393	ENSATEG00000007255	-	93	64.643	Anabas_testudineus
ENSELUG00000013506	SRSF6	50	84.247	ENSAPLG00000014472	SRSF6	92	59.028	Anas_platyrhynchos
ENSELUG00000013506	SRSF6	70	85.897	ENSACAG00000002061	SRSF6	87	63.636	Anolis_carolinensis
ENSELUG00000013506	SRSF6	88	77.778	ENSANAG00000024080	SRSF6	73	77.778	Aotus_nancymaae
ENSELUG00000013506	SRSF6	65	93.151	ENSACLG00000024373	-	86	91.463	Astatotilapia_calliptera
ENSELUG00000013506	SRSF6	69	93.506	ENSAMXG00000042692	-	96	85.185	Astyanax_mexicanus
ENSELUG00000013506	SRSF6	84	87.234	ENSAMXG00000003101	-	52	83.756	Astyanax_mexicanus
ENSELUG00000013506	SRSF6	88	78.788	ENSBTAG00000008527	SRSF6	73	78.788	Bos_taurus
ENSELUG00000013506	SRSF6	88	77.778	ENSCJAG00000048403	SRSF6	67	84.530	Callithrix_jacchus
ENSELUG00000013506	SRSF6	88	78.788	ENSCAFG00000009289	SRSF6	92	63.323	Canis_familiaris
ENSELUG00000013506	SRSF6	88	78.788	ENSCAFG00020013559	SRSF6	92	63.323	Canis_lupus_dingo
ENSELUG00000013506	SRSF6	70	87.179	ENSCHIG00000009148	-	65	70.536	Capra_hircus
ENSELUG00000013506	SRSF6	88	78.788	ENSCHIG00000015890	-	73	78.788	Capra_hircus
ENSELUG00000013506	SRSF6	63	60.541	ENSTSYG00000026476	SRSF6	59	54.419	Carlito_syrichta
ENSELUG00000013506	SRSF6	88	77.778	ENSCPOG00000011761	SRSF6	73	77.778	Cavia_porcellus
ENSELUG00000013506	SRSF6	74	70.238	ENSCCAG00000018540	-	60	74.176	Cebus_capucinus
ENSELUG00000013506	SRSF6	88	77.778	ENSCCAG00000026018	-	73	77.778	Cebus_capucinus
ENSELUG00000013506	SRSF6	88	77.778	ENSCATG00000030794	SRSF6	73	77.778	Cercocebus_atys
ENSELUG00000013506	SRSF6	88	77.778	ENSCLAG00000010247	SRSF6	73	77.778	Chinchilla_lanigera
ENSELUG00000013506	SRSF6	70	88.462	ENSCSAG00000014022	SRSF6	53	84.530	Chlorocebus_sabaeus
ENSELUG00000013506	SRSF6	70	88.462	ENSCPBG00000018200	SRSF6	53	83.696	Chrysemys_picta_bellii
ENSELUG00000013506	SRSF6	88	77.778	ENSCGRG00001022339	Srsf6	73	77.778	Cricetulus_griseus_chok1gshd
ENSELUG00000013506	SRSF6	70	94.872	ENSCSEG00000019778	SRSF6	90	86.400	Cynoglossus_semilaevis
ENSELUG00000013506	SRSF6	70	92.308	ENSCVAG00000001863	SRSF6	95	86.719	Cyprinodon_variegatus
ENSELUG00000013506	SRSF6	69	93.506	ENSDARG00000016783	srsf6b	96	88.043	Danio_rerio
ENSELUG00000013506	SRSF6	70	88.462	ENSDNOG00000008410	SRSF6	52	84.530	Dasypus_novemcinctus
ENSELUG00000013506	SRSF6	88	77.778	ENSDORG00000028378	Srsf6	73	77.778	Dipodomys_ordii
ENSELUG00000013506	SRSF6	70	83.333	ENSETEG00000006221	SRSF6	52	81.667	Echinops_telfairi
ENSELUG00000013506	SRSF6	70	89.744	ENSEASG00005023429	SRSF6	66	78.761	Equus_asinus_asinus
ENSELUG00000013506	SRSF6	70	89.744	ENSECAG00000023932	SRSF6	66	78.761	Equus_caballus
ENSELUG00000013506	SRSF6	70	89.744	ENSFCAG00000032814	SRSF6	92	63.323	Felis_catus
ENSELUG00000013506	SRSF6	63	60.541	ENSFDAG00000012191	SRSF6	59	54.419	Fukomys_damarensis
ENSELUG00000013506	SRSF6	96	69.909	ENSFHEG00000023065	srsf6a	54	88.333	Fundulus_heteroclitus
ENSELUG00000013506	SRSF6	90	86.813	ENSGMOG00000014458	srsf6a	51	83.069	Gadus_morhua
ENSELUG00000013506	SRSF6	78	75.556	ENSGMOG00000006105	srsf6a	58	80.380	Gadus_morhua
ENSELUG00000013506	SRSF6	71	88.750	ENSGALG00000000990	SRSF6	93	60.597	Gallus_gallus
ENSELUG00000013506	SRSF6	70	93.590	ENSGAFG00000019088	-	72	88.000	Gambusia_affinis
ENSELUG00000013506	SRSF6	74	90.361	ENSGACG00000006084	srsf6a	52	87.978	Gasterosteus_aculeatus
ENSELUG00000013506	SRSF6	70	88.462	ENSGAGG00000003238	SRSF6	53	83.696	Gopherus_agassizii
ENSELUG00000013506	SRSF6	88	77.778	ENSGGOG00000009808	SRSF6	73	77.778	Gorilla_gorilla
ENSELUG00000013506	SRSF6	68	93.421	ENSHBUG00000006386	-	94	69.205	Haplochromis_burtoni
ENSELUG00000013506	SRSF6	74	67.470	ENSHGLG00000007701	-	56	66.854	Heterocephalus_glaber_female
ENSELUG00000013506	SRSF6	88	77.778	ENSHGLG00000007348	SRSF6	73	77.778	Heterocephalus_glaber_female
ENSELUG00000013506	SRSF6	92	68.836	ENSHCOG00000002740	srsf6a	100	66.458	Hippocampus_comes
ENSELUG00000013506	SRSF6	94	70.126	ENSIPUG00000016856	SRSF6	50	83.815	Ictalurus_punctatus
ENSELUG00000013506	SRSF6	100	72.277	ENSIPUG00000004776	-	92	75.000	Ictalurus_punctatus
ENSELUG00000013506	SRSF6	88	77.778	ENSSTOG00000010866	SRSF6	89	65.686	Ictidomys_tridecemlineatus
ENSELUG00000013506	SRSF6	100	76.471	ENSKMAG00000011934	srsf6a	100	76.797	Kryptolebias_marmoratus
ENSELUG00000013506	SRSF6	93	83.429	ENSLBEG00000007356	srsf6a	50	87.293	Labrus_bergylta
ENSELUG00000013506	SRSF6	96	70.154	ENSLACG00000005466	SRSF6	64	72.685	Latimeria_chalumnae
ENSELUG00000013506	SRSF6	88	77.778	ENSMFAG00000036925	SRSF6	73	77.778	Macaca_fascicularis
ENSELUG00000013506	SRSF6	88	77.778	ENSMMUG00000006742	SRSF6	73	77.778	Macaca_mulatta
ENSELUG00000013506	SRSF6	88	76.768	ENSMNEG00000027392	-	73	76.768	Macaca_nemestrina
ENSELUG00000013506	SRSF6	70	87.179	ENSMNEG00000038270	-	53	83.978	Macaca_nemestrina
ENSELUG00000013506	SRSF6	78	89.655	ENSMAMG00000023477	-	92	89.655	Mastacembelus_armatus
ENSELUG00000013506	SRSF6	84	89.674	ENSMAMG00000017161	srsf6a	94	77.982	Mastacembelus_armatus
ENSELUG00000013506	SRSF6	68	93.421	ENSMZEG00005008032	-	56	88.827	Maylandia_zebra
ENSELUG00000013506	SRSF6	83	78.689	ENSMZEG00005020658	-	56	89.506	Maylandia_zebra
ENSELUG00000013506	SRSF6	88	77.778	ENSMAUG00000019086	-	73	77.778	Mesocricetus_auratus
ENSELUG00000013506	SRSF6	88	77.778	ENSMICG00000008537	SRSF6	73	77.778	Microcebus_murinus
ENSELUG00000013506	SRSF6	70	93.590	ENSMMOG00000015241	-	78	93.976	Mola_mola
ENSELUG00000013506	SRSF6	70	88.462	ENSMODG00000003107	SRSF6	93	61.950	Monodelphis_domestica
ENSELUG00000013506	SRSF6	88	77.778	MGP_CAROLIEiJ_G0024606	Srsf6	73	77.778	Mus_caroli
ENSELUG00000013506	SRSF6	88	77.778	ENSMUSG00000016921	Srsf6	73	77.778	Mus_musculus
ENSELUG00000013506	SRSF6	88	77.778	MGP_PahariEiJ_G0026050	Srsf6	73	77.778	Mus_pahari
ENSELUG00000013506	SRSF6	88	77.778	MGP_SPRETEiJ_G0025528	Srsf6	73	77.778	Mus_spretus
ENSELUG00000013506	SRSF6	70	89.744	ENSMPUG00000017692	SRSF6	95	62.676	Mustela_putorius_furo
ENSELUG00000013506	SRSF6	63	56.132	ENSMLUG00000016618	SRSF6	66	50.407	Myotis_lucifugus
ENSELUG00000013506	SRSF6	88	77.778	ENSNGAG00000017560	Srsf6	93	64.013	Nannospalax_galili
ENSELUG00000013506	SRSF6	95	68.987	ENSNBRG00000014709	-	94	69.205	Neolamprologus_brichardi
ENSELUG00000013506	SRSF6	70	94.872	ENSNBRG00000001846	-	51	88.525	Neolamprologus_brichardi
ENSELUG00000013506	SRSF6	88	77.778	ENSNLEG00000006524	SRSF6	73	77.778	Nomascus_leucogenys
ENSELUG00000013506	SRSF6	70	88.462	ENSMEUG00000014615	SRSF6	60	84.615	Notamacropus_eugenii
ENSELUG00000013506	SRSF6	88	77.778	ENSODEG00000016510	-	73	77.778	Octodon_degus
ENSELUG00000013506	SRSF6	70	94.872	ENSONIG00000001925	-	85	73.927	Oreochromis_niloticus
ENSELUG00000013506	SRSF6	72	91.358	ENSONIG00000020247	-	52	87.709	Oreochromis_niloticus
ENSELUG00000013506	SRSF6	62	60.500	ENSOCUG00000009785	-	62	64.948	Oryctolagus_cuniculus
ENSELUG00000013506	SRSF6	61	52.222	ENSOCUG00000023999	-	70	52.273	Oryctolagus_cuniculus
ENSELUG00000013506	SRSF6	56	88.889	ENSORLG00000003530	srsf6a	65	63.223	Oryzias_latipes
ENSELUG00000013506	SRSF6	70	91.026	ENSORLG00020017506	srsf6a	91	70.253	Oryzias_latipes_hni
ENSELUG00000013506	SRSF6	56	88.889	ENSORLG00015009410	srsf6a	65	63.223	Oryzias_latipes_hsok
ENSELUG00000013506	SRSF6	94	55.942	ENSOMEG00000006001	srsf6a	51	67.961	Oryzias_melastigma
ENSELUG00000013506	SRSF6	70	88.462	ENSOGAG00000014468	SRSF6	52	83.978	Otolemur_garnettii
ENSELUG00000013506	SRSF6	67	84.000	ENSOARG00000003117	SRSF6	65	68.610	Ovis_aries
ENSELUG00000013506	SRSF6	70	87.179	ENSPPAG00000034327	-	52	83.978	Pan_paniscus
ENSELUG00000013506	SRSF6	70	80.769	ENSPPAG00000043131	-	76	53.875	Pan_paniscus
ENSELUG00000013506	SRSF6	70	89.744	ENSPPRG00000008917	SRSF6	92	63.323	Panthera_pardus
ENSELUG00000013506	SRSF6	88	77.778	ENSPTRG00000044686	-	73	77.778	Pan_troglodytes
ENSELUG00000013506	SRSF6	70	80.769	ENSPTRG00000046274	-	76	53.875	Pan_troglodytes
ENSELUG00000013506	SRSF6	88	77.778	ENSPANG00000035224	SRSF6	73	77.778	Papio_anubis
ENSELUG00000013506	SRSF6	96	81.991	ENSPKIG00000018463	-	81	90.244	Paramormyrops_kingsleyae
ENSELUG00000013506	SRSF6	70	91.026	ENSPKIG00000015603	-	88	88.281	Paramormyrops_kingsleyae
ENSELUG00000013506	SRSF6	78	71.264	ENSPKIG00000015703	-	95	61.224	Paramormyrops_kingsleyae
ENSELUG00000013506	SRSF6	96	74.691	ENSPMGG00000014963	srsf6a	54	90.055	Periophthalmus_magnuspinnatus
ENSELUG00000013506	SRSF6	56	74.603	ENSPEMG00000022405	-	79	51.042	Peromyscus_maniculatus_bairdii
ENSELUG00000013506	SRSF6	88	77.778	ENSPCIG00000003820	SRSF6	73	77.778	Phascolarctos_cinereus
ENSELUG00000013506	SRSF6	97	70.381	ENSPLAG00000009243	srsf6a	80	86.614	Poecilia_latipinna
ENSELUG00000013506	SRSF6	54	49.268	ENSPMEG00000006056	SRSF6	89	49.268	Poecilia_mexicana
ENSELUG00000013506	SRSF6	71	92.405	ENSPMEG00000006042	SRSF6	53	88.462	Poecilia_mexicana
ENSELUG00000013506	SRSF6	71	92.405	ENSPREG00000001040	srsf6a	87	87.692	Poecilia_reticulata
ENSELUG00000013506	SRSF6	70	88.462	ENSPPYG00000011019	SRSF6	53	84.530	Pongo_abelii
ENSELUG00000013506	SRSF6	70	87.179	ENSPCAG00000010954	SRSF6	55	83.978	Procavia_capensis
ENSELUG00000013506	SRSF6	88	77.778	ENSPCOG00000026364	SRSF6	73	77.778	Propithecus_coquereli
ENSELUG00000013506	SRSF6	70	89.744	ENSPVAG00000015232	SRSF6	53	84.530	Pteropus_vampyrus
ENSELUG00000013506	SRSF6	92	78.165	ENSPNYG00000011272	-	50	88.525	Pundamilia_nyererei
ENSELUG00000013506	SRSF6	68	93.421	ENSPNYG00000004944	-	94	69.205	Pundamilia_nyererei
ENSELUG00000013506	SRSF6	73	91.463	ENSPNAG00000023179	-	94	84.375	Pygocentrus_nattereri
ENSELUG00000013506	SRSF6	70	88.462	ENSRNOG00000006380	Srsf6	53	84.530	Rattus_norvegicus
ENSELUG00000013506	SRSF6	71	88.750	ENSRBIG00000041414	SRSF6	62	88.750	Rhinopithecus_bieti
ENSELUG00000013506	SRSF6	88	77.778	ENSRROG00000029989	SRSF6	73	77.778	Rhinopithecus_roxellana
ENSELUG00000013506	SRSF6	74	74.699	ENSSBOG00000034078	-	54	70.950	Saimiri_boliviensis_boliviensis
ENSELUG00000013506	SRSF6	88	77.778	ENSSBOG00000033708	-	73	77.778	Saimiri_boliviensis_boliviensis
ENSELUG00000013506	SRSF6	70	88.462	ENSSHAG00000012805	SRSF6	93	62.264	Sarcophilus_harrisii
ENSELUG00000013506	SRSF6	96	70.930	ENSSFOG00015019681	-	53	82.143	Scleropages_formosus
ENSELUG00000013506	SRSF6	69	90.909	ENSSFOG00015015169	SRSF6	93	78.397	Scleropages_formosus
ENSELUG00000013506	SRSF6	71	91.250	ENSSMAG00000014861	-	95	66.406	Scophthalmus_maximus
ENSELUG00000013506	SRSF6	93	71.008	ENSSMAG00000014819	-	81	71.782	Scophthalmus_maximus
ENSELUG00000013506	SRSF6	98	72.699	ENSSMAG00000017447	-	54	83.889	Scophthalmus_maximus
ENSELUG00000013506	SRSF6	89	89.674	ENSSDUG00000016097	srsf6a	100	74.785	Seriola_dumerili
ENSELUG00000013506	SRSF6	83	84.946	ENSSDUG00000011036	-	98	86.813	Seriola_dumerili
ENSELUG00000013506	SRSF6	96	77.439	ENSSLDG00000022841	srsf6a	94	76.758	Seriola_lalandi_dorsalis
ENSELUG00000013506	SRSF6	83	84.946	ENSSLDG00000014858	-	98	86.813	Seriola_lalandi_dorsalis
ENSELUG00000013506	SRSF6	72	87.654	ENSSPUG00000004967	SRSF6	59	88.750	Sphenodon_punctatus
ENSELUG00000013506	SRSF6	94	75.874	ENSSPAG00000002362	srsf6a	92	72.917	Stegastes_partitus
ENSELUG00000013506	SRSF6	78	89.773	ENSSPAG00000021913	-	90	89.773	Stegastes_partitus
ENSELUG00000013506	SRSF6	70	89.744	ENSSSCG00000007362	SRSF6	60	84.530	Sus_scrofa
ENSELUG00000013506	SRSF6	70	88.462	ENSTGUG00000003455	SRSF6	93	62.037	Taeniopygia_guttata
ENSELUG00000013506	SRSF6	71	93.750	ENSTRUG00000021397	-	87	93.750	Takifugu_rubripes
ENSELUG00000013506	SRSF6	100	70.725	ENSTNIG00000001692	srsf6a	95	68.421	Tetraodon_nigroviridis
ENSELUG00000013506	SRSF6	88	78.788	ENSUAMG00000003559	SRSF6	92	63.323	Ursus_americanus
ENSELUG00000013506	SRSF6	88	52.525	ENSVVUG00000019276	-	90	38.889	Vulpes_vulpes
ENSELUG00000013506	SRSF6	95	71.795	ENSXMAG00000021849	srsf6a	93	64.478	Xiphophorus_maculatus