EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000013674 (Gene tree)
Gene ID: 105015014
Gene Symbol: PRDM12
Alias: PFM9
Full Name: PR domain zinc finger protein 12
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 5825 bases
Position: chrLG14:15372926-15378750
Accession: 105015014
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000034943	zf-C2H2	PF00096.26	8.8e-12	1	2
ENSELUP00000034943	zf-C2H2	PF00096.26	8.8e-12	2	2
ENSELUP00000013563	zf-C2H2	PF00096.26	1e-11	1	2
ENSELUP00000013563	zf-C2H2	PF00096.26	1e-11	2	2
ENSELUP00000034943	zf-met	PF12874.7	6.4e-07	1	1
ENSELUP00000013563	zf-met	PF12874.7	8.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000022141	PRDM12-201	1044	-	ENSELUP00000034943	347 (aa)	-	-
ENSELUT00000038576	PRDM12-202	1952	XM_010877807	ENSELUP00000013563	376 (aa)	XP_010876109	UPI0005766F3F

Gene Model

Click here to download ENSELUG00000013674's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000013674's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000013674	PRDM12	100	80.789	ENSELUG00000009905	prdm12b	100	79.839
ENSELUG00000013674	PRDM12	66	42.105	ENSELUG00000005894	prdm5	89	36.364

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000013674	PRDM12	90	82.569	ENSG00000130711	PRDM12	99	75.956	Homo_sapiens
ENSELUG00000013674	PRDM12	100	83.333	ENSAPOG00000016051	prdm12b	100	83.377	Acanthochromis_polyacanthus
ENSELUG00000013674	PRDM12	100	65.957	ENSAPOG00000018234	-	100	66.223	Acanthochromis_polyacanthus
ENSELUG00000013674	PRDM12	89	83.072	ENSAMEG00000016234	PRDM12	99	83.072	Ailuropoda_melanoleuca
ENSELUG00000013674	PRDM12	100	86.207	ENSACIG00000019578	prdm12b	100	86.207	Amphilophus_citrinellus
ENSELUG00000013674	PRDM12	100	75.835	ENSACIG00000005193	-	100	74.807	Amphilophus_citrinellus
ENSELUG00000013674	PRDM12	100	83.202	ENSAOCG00000015040	prdm12b	100	82.199	Amphiprion_ocellaris
ENSELUG00000013674	PRDM12	100	82.940	ENSAPEG00000015092	prdm12b	100	82.199	Amphiprion_percula
ENSELUG00000013674	PRDM12	99	75.543	ENSAPEG00000022849	-	99	76.630	Amphiprion_percula
ENSELUG00000013674	PRDM12	100	78.238	ENSATEG00000014595	-	96	81.765	Anabas_testudineus
ENSELUG00000013674	PRDM12	89	83.025	ENSANAG00000020616	PRDM12	95	83.025	Aotus_nancymaae
ENSELUG00000013674	PRDM12	99	86.648	ENSACLG00000011876	prdm12b	100	86.648	Astatotilapia_calliptera
ENSELUG00000013674	PRDM12	100	72.705	ENSACLG00000007631	-	100	72.658	Astatotilapia_calliptera
ENSELUG00000013674	PRDM12	99	82.153	ENSAMXG00000008540	PRDM12	100	82.153	Astyanax_mexicanus
ENSELUG00000013674	PRDM12	100	79.737	ENSAMXG00000033665	prdm12b	100	80.593	Astyanax_mexicanus
ENSELUG00000013674	PRDM12	89	83.333	ENSBTAG00000023797	PRDM12	99	76.944	Bos_taurus
ENSELUG00000013674	PRDM12	89	83.025	ENSCJAG00000020540	PRDM12	99	76.923	Callithrix_jacchus
ENSELUG00000013674	PRDM12	77	84.043	ENSCAFG00000023076	PRDM12	99	75.617	Canis_familiaris
ENSELUG00000013674	PRDM12	89	83.333	ENSCAFG00020024046	PRDM12	99	76.294	Canis_lupus_dingo
ENSELUG00000013674	PRDM12	89	83.333	ENSCHIG00000025005	PRDM12	99	77.008	Capra_hircus
ENSELUG00000013674	PRDM12	89	81.231	ENSCPOG00000005901	PRDM12	98	81.231	Cavia_porcellus
ENSELUG00000013674	PRDM12	89	83.025	ENSCCAG00000037485	PRDM12	99	76.503	Cebus_capucinus
ENSELUG00000013674	PRDM12	89	83.025	ENSCATG00000020327	PRDM12	99	76.503	Cercocebus_atys
ENSELUG00000013674	PRDM12	89	83.951	ENSCLAG00000005499	PRDM12	89	83.951	Chinchilla_lanigera
ENSELUG00000013674	PRDM12	89	83.025	ENSCSAG00000014756	PRDM12	99	76.022	Chlorocebus_sabaeus
ENSELUG00000013674	PRDM12	99	79.444	ENSCPBG00000022628	PRDM12	99	79.444	Chrysemys_picta_bellii
ENSELUG00000013674	PRDM12	89	83.333	ENSCGRG00001015005	Prdm12	99	75.881	Cricetulus_griseus_chok1gshd
ENSELUG00000013674	PRDM12	100	76.215	ENSCVAG00000000944	-	100	76.154	Cyprinodon_variegatus
ENSELUG00000013674	PRDM12	100	84.085	ENSCVAG00000017166	prdm12b	100	83.333	Cyprinodon_variegatus
ENSELUG00000013674	PRDM12	100	80.952	ENSDARG00000007430	prdm12b	100	81.744	Danio_rerio
ENSELUG00000013674	PRDM12	89	82.769	ENSDNOG00000042302	PRDM12	99	76.731	Dasypus_novemcinctus
ENSELUG00000013674	PRDM12	91	63.231	ENSEBUG00000016780	prdm12b	80	62.674	Eptatretus_burgeri
ENSELUG00000013674	PRDM12	89	83.333	ENSEASG00005008472	PRDM12	99	77.008	Equus_asinus_asinus
ENSELUG00000013674	PRDM12	90	82.875	ENSECAG00000005933	PRDM12	99	77.285	Equus_caballus
ENSELUG00000013674	PRDM12	89	83.333	ENSFCAG00000043086	PRDM12	99	76.776	Felis_catus
ENSELUG00000013674	PRDM12	99	80.000	ENSFALG00000001445	PRDM12	89	80.000	Ficedula_albicollis
ENSELUG00000013674	PRDM12	99	73.590	ENSFHEG00000007746	-	100	73.590	Fundulus_heteroclitus
ENSELUG00000013674	PRDM12	100	83.684	ENSFHEG00000003944	prdm12b	100	82.940	Fundulus_heteroclitus
ENSELUG00000013674	PRDM12	100	81.443	ENSGMOG00000011797	prdm12b	94	86.787	Gadus_morhua
ENSELUG00000013674	PRDM12	99	80.000	ENSGALG00000003895	PRDM12	99	80.000	Gallus_gallus
ENSELUG00000013674	PRDM12	100	80.990	ENSGAFG00000010827	prdm12b	99	80.533	Gambusia_affinis
ENSELUG00000013674	PRDM12	100	83.333	ENSGACG00000016713	prdm12b	99	81.941	Gasterosteus_aculeatus
ENSELUG00000013674	PRDM12	99	79.444	ENSGAGG00000014083	PRDM12	99	79.444	Gopherus_agassizii
ENSELUG00000013674	PRDM12	90	82.263	ENSGGOG00000010568	PRDM12	99	75.610	Gorilla_gorilla
ENSELUG00000013674	PRDM12	100	84.656	ENSHBUG00000022878	prdm12b	100	82.804	Haplochromis_burtoni
ENSELUG00000013674	PRDM12	100	72.705	ENSHBUG00000022537	-	93	72.475	Haplochromis_burtoni
ENSELUG00000013674	PRDM12	89	84.259	ENSHGLG00000013939	PRDM12	99	76.923	Heterocephalus_glaber_female
ENSELUG00000013674	PRDM12	90	84.593	ENSHCOG00000003663	prdm12b	100	76.904	Hippocampus_comes
ENSELUG00000013674	PRDM12	99	73.481	ENSHCOG00000021167	-	100	73.481	Hippocampus_comes
ENSELUG00000013674	PRDM12	100	76.923	ENSIPUG00000019544	PRDM12	100	77.808	Ictalurus_punctatus
ENSELUG00000013674	PRDM12	100	80.159	ENSIPUG00000017053	prdm12b	100	79.620	Ictalurus_punctatus
ENSELUG00000013674	PRDM12	89	83.333	ENSSTOG00000005986	PRDM12	85	83.333	Ictidomys_tridecemlineatus
ENSELUG00000013674	PRDM12	89	83.951	ENSJJAG00000005424	Prdm12	98	83.951	Jaculus_jaculus
ENSELUG00000013674	PRDM12	100	77.531	ENSKMAG00000016921	prdm12b	100	77.284	Kryptolebias_marmoratus
ENSELUG00000013674	PRDM12	93	80.000	ENSKMAG00000021205	-	93	80.000	Kryptolebias_marmoratus
ENSELUG00000013674	PRDM12	100	81.771	ENSLBEG00000017769	prdm12b	100	81.510	Labrus_bergylta
ENSELUG00000013674	PRDM12	100	75.907	ENSLBEG00000007776	-	100	76.166	Labrus_bergylta
ENSELUG00000013674	PRDM12	99	80.332	ENSLACG00000017560	PRDM12	100	80.332	Latimeria_chalumnae
ENSELUG00000013674	PRDM12	100	82.895	ENSLOCG00000005429	prdm12b	100	82.677	Lepisosteus_oculatus
ENSELUG00000013674	PRDM12	89	81.818	ENSLAFG00000006979	PRDM12	88	81.818	Loxodonta_africana
ENSELUG00000013674	PRDM12	99	75.683	ENSMFAG00000040322	PRDM12	99	75.683	Macaca_fascicularis
ENSELUG00000013674	PRDM12	89	83.025	ENSMNEG00000037234	PRDM12	99	76.503	Macaca_nemestrina
ENSELUG00000013674	PRDM12	99	75.196	ENSMAMG00000018988	-	100	75.457	Mastacembelus_armatus
ENSELUG00000013674	PRDM12	100	85.185	ENSMAMG00000013212	prdm12b	100	84.656	Mastacembelus_armatus
ENSELUG00000013674	PRDM12	100	72.346	ENSMZEG00005000415	PRDM12	100	72.292	Maylandia_zebra
ENSELUG00000013674	PRDM12	96	80.692	ENSMGAG00000005438	PRDM12	98	80.692	Meleagris_gallopavo
ENSELUG00000013674	PRDM12	99	76.087	ENSMAUG00000013040	Prdm12	99	76.087	Mesocricetus_auratus
ENSELUG00000013674	PRDM12	89	83.333	ENSMICG00000015480	PRDM12	99	76.731	Microcebus_murinus
ENSELUG00000013674	PRDM12	99	77.500	ENSMOCG00000021026	Prdm12	89	83.642	Microtus_ochrogaster
ENSELUG00000013674	PRDM12	99	79.167	ENSMODG00000012108	PRDM12	99	79.167	Monodelphis_domestica
ENSELUG00000013674	PRDM12	86	79.692	ENSMALG00000021901	prdm12b	98	76.923	Monopterus_albus
ENSELUG00000013674	PRDM12	90	82.875	MGP_CAROLIEiJ_G0023414	Prdm12	99	76.648	Mus_caroli
ENSELUG00000013674	PRDM12	90	82.875	ENSMUSG00000079466	Prdm12	99	76.648	Mus_musculus
ENSELUG00000013674	PRDM12	90	82.875	MGP_PahariEiJ_G0024871	Prdm12	99	76.648	Mus_pahari
ENSELUG00000013674	PRDM12	90	82.875	MGP_SPRETEiJ_G0024331	Prdm12	99	76.648	Mus_spretus
ENSELUG00000013674	PRDM12	89	83.025	ENSNGAG00000018480	Prdm12	99	76.944	Nannospalax_galili
ENSELUG00000013674	PRDM12	99	72.507	ENSNBRG00000024312	-	100	72.776	Neolamprologus_brichardi
ENSELUG00000013674	PRDM12	100	85.979	ENSNBRG00000006727	prdm12b	100	85.185	Neolamprologus_brichardi
ENSELUG00000013674	PRDM12	99	72.222	ENSMEUG00000003828	PRDM12	85	86.243	Notamacropus_eugenii
ENSELUG00000013674	PRDM12	89	83.333	ENSOPRG00000008680	PRDM12	98	83.333	Ochotona_princeps
ENSELUG00000013674	PRDM12	89	84.259	ENSODEG00000016282	PRDM12	61	84.259	Octodon_degus
ENSELUG00000013674	PRDM12	64	73.750	ENSOANG00000001043	PRDM12	100	77.232	Ornithorhynchus_anatinus
ENSELUG00000013674	PRDM12	82	82.274	ENSOCUG00000008241	PRDM12	96	82.274	Oryctolagus_cuniculus
ENSELUG00000013674	PRDM12	100	83.333	ENSORLG00000007114	prdm12b	99	83.333	Oryzias_latipes
ENSELUG00000013674	PRDM12	100	74.365	ENSORLG00000017558	-	100	73.671	Oryzias_latipes
ENSELUG00000013674	PRDM12	100	74.619	ENSORLG00020013167	-	100	73.671	Oryzias_latipes_hni
ENSELUG00000013674	PRDM12	100	82.105	ENSORLG00020019565	prdm12b	99	82.632	Oryzias_latipes_hni
ENSELUG00000013674	PRDM12	100	82.322	ENSORLG00015007621	prdm12b	99	81.266	Oryzias_latipes_hsok
ENSELUG00000013674	PRDM12	100	74.365	ENSORLG00015003435	-	100	73.671	Oryzias_latipes_hsok
ENSELUG00000013674	PRDM12	100	76.425	ENSOMEG00000007762	-	100	74.870	Oryzias_melastigma
ENSELUG00000013674	PRDM12	100	82.245	ENSOMEG00000004134	prdm12b	99	81.723	Oryzias_melastigma
ENSELUG00000013674	PRDM12	89	83.333	ENSOGAG00000007557	PRDM12	97	83.333	Otolemur_garnettii
ENSELUG00000013674	PRDM12	80	79.110	ENSPPAG00000031506	-	99	79.110	Pan_paniscus
ENSELUG00000013674	PRDM12	89	77.846	ENSPPRG00000023024	PRDM12	83	77.846	Panthera_pardus
ENSELUG00000013674	PRDM12	90	82.569	ENSPTRG00000043324	-	99	75.881	Pan_troglodytes
ENSELUG00000013674	PRDM12	90	82.569	ENSPTRG00000021475	PRDM12	99	75.881	Pan_troglodytes
ENSELUG00000013674	PRDM12	89	83.025	ENSPANG00000025967	PRDM12	99	76.503	Papio_anubis
ENSELUG00000013674	PRDM12	100	84.881	ENSPKIG00000007228	prdm12b	100	83.598	Paramormyrops_kingsleyae
ENSELUG00000013674	PRDM12	90	81.176	ENSPKIG00000004305	PRDM12	94	82.012	Paramormyrops_kingsleyae
ENSELUG00000013674	PRDM12	99	79.167	ENSPSIG00000006739	PRDM12	99	79.167	Pelodiscus_sinensis
ENSELUG00000013674	PRDM12	99	74.074	ENSPMGG00000002356	-	100	74.074	Periophthalmus_magnuspinnatus
ENSELUG00000013674	PRDM12	100	83.113	ENSPMGG00000008867	prdm12b	99	83.106	Periophthalmus_magnuspinnatus
ENSELUG00000013674	PRDM12	89	83.333	ENSPEMG00000009969	Prdm12	89	83.333	Peromyscus_maniculatus_bairdii
ENSELUG00000013674	PRDM12	99	79.167	ENSPCIG00000024119	PRDM12	99	79.167	Phascolarctos_cinereus
ENSELUG00000013674	PRDM12	100	83.862	ENSPFOG00000019841	prdm12b	100	82.275	Poecilia_formosa
ENSELUG00000013674	PRDM12	100	81.088	ENSPLAG00000016626	prdm12b	99	80.159	Poecilia_latipinna
ENSELUG00000013674	PRDM12	96	80.697	ENSPMEG00000016698	prdm12b	99	80.220	Poecilia_mexicana
ENSELUG00000013674	PRDM12	100	81.137	ENSPREG00000015073	prdm12b	99	79.894	Poecilia_reticulata
ENSELUG00000013674	PRDM12	90	78.704	ENSPREG00000003211	-	90	78.704	Poecilia_reticulata
ENSELUG00000013674	PRDM12	89	83.025	ENSPPYG00000019694	PRDM12	92	83.025	Pongo_abelii
ENSELUG00000013674	PRDM12	89	83.333	ENSPCOG00000022255	PRDM12	99	75.881	Propithecus_coquereli
ENSELUG00000013674	PRDM12	89	83.333	ENSPVAG00000001511	PRDM12	99	75.881	Pteropus_vampyrus
ENSELUG00000013674	PRDM12	100	72.346	ENSPNYG00000013589	-	100	72.292	Pundamilia_nyererei
ENSELUG00000013674	PRDM12	100	85.185	ENSPNYG00000009607	prdm12b	100	82.804	Pundamilia_nyererei
ENSELUG00000013674	PRDM12	99	81.389	ENSPNAG00000013396	PRDM12	100	81.667	Pygocentrus_nattereri
ENSELUG00000013674	PRDM12	100	80.688	ENSPNAG00000024532	prdm12b	100	80.978	Pygocentrus_nattereri
ENSELUG00000013674	PRDM12	90	82.875	ENSRNOG00000009218	Prdm12	99	76.648	Rattus_norvegicus
ENSELUG00000013674	PRDM12	87	82.595	ENSRBIG00000042712	PRDM12	88	81.875	Rhinopithecus_bieti
ENSELUG00000013674	PRDM12	88	82.812	ENSRROG00000043554	PRDM12	99	82.812	Rhinopithecus_roxellana
ENSELUG00000013674	PRDM12	99	78.670	ENSSHAG00000015972	PRDM12	99	78.670	Sarcophilus_harrisii
ENSELUG00000013674	PRDM12	100	81.234	ENSSMAG00000003754	prdm12b	100	82.262	Scophthalmus_maximus
ENSELUG00000013674	PRDM12	100	79.896	ENSSDUG00000019071	-	100	79.896	Seriola_dumerili
ENSELUG00000013674	PRDM12	100	85.677	ENSSDUG00000023498	prdm12b	100	83.990	Seriola_dumerili
ENSELUG00000013674	PRDM12	100	86.877	ENSSLDG00000009557	prdm12b	100	86.877	Seriola_lalandi_dorsalis
ENSELUG00000013674	PRDM12	99	78.177	ENSSLDG00000013562	-	100	78.177	Seriola_lalandi_dorsalis
ENSELUG00000013674	PRDM12	99	79.722	ENSSPUG00000013424	PRDM12	99	79.722	Sphenodon_punctatus
ENSELUG00000013674	PRDM12	100	70.180	ENSSPAG00000022420	-	100	71.038	Stegastes_partitus
ENSELUG00000013674	PRDM12	100	83.727	ENSSPAG00000018824	prdm12b	100	83.770	Stegastes_partitus
ENSELUG00000013674	PRDM12	89	83.333	ENSSSCG00000005703	PRDM12	99	76.294	Sus_scrofa
ENSELUG00000013674	PRDM12	100	75.989	ENSTRUG00000013239	-	100	75.000	Takifugu_rubripes
ENSELUG00000013674	PRDM12	100	81.053	ENSTRUG00000018659	prdm12b	100	82.065	Takifugu_rubripes
ENSELUG00000013674	PRDM12	100	80.263	ENSTNIG00000009020	prdm12b	100	80.217	Tetraodon_nigroviridis
ENSELUG00000013674	PRDM12	99	75.910	ENSTNIG00000005859	-	100	75.910	Tetraodon_nigroviridis
ENSELUG00000013674	PRDM12	89	83.333	ENSUAMG00000009653	PRDM12	90	83.333	Ursus_americanus
ENSELUG00000013674	PRDM12	89	83.333	ENSVVUG00000027662	PRDM12	77	83.333	Vulpes_vulpes
ENSELUG00000013674	PRDM12	100	81.890	ENSXCOG00000002836	prdm12b	99	81.233	Xiphophorus_couchianus
ENSELUG00000013674	PRDM12	100	82.415	ENSXMAG00000005537	prdm12b	100	81.675	Xiphophorus_maculatus
ENSELUG00000013674	PRDM12	100	73.020	ENSXMAG00000028012	-	100	73.298	Xiphophorus_maculatus