EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSELUG00000013775 (Gene tree)
Gene ID
105017804
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Esox_lucius
Status
putative
Strand
Minus strand
Length
11907 bases
Position
chrLG18:19519432-19531338
Accession
105017804
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSELUP00000034997CPSF73-100_CPF11718.81.9e-5211
ENSELUP00000013644CPSF73-100_CPF11718.82.8e-5011
ENSELUP00000013644Beta-CaspPF10996.81.1e-3311
ENSELUP00000034997Beta-CaspPF10996.81.2e-3311
ENSELUP00000034997Lactamase_BPF00753.271.2e-1811
ENSELUP00000013644Lactamase_BPF00753.272.8e-0811
ENSELUP00000013644RMMBLPF07521.125.4e-2111
ENSELUP00000034997RMMBLPF07521.126.2e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSELUT00000022235-1890-ENSELUP00000013644629 (aa)--
ENSELUT00000022268-5608XM_010882707ENSELUP00000034997690 (aa)XP_010881009UPI000577A36C
Gene Model
Click here to download ENSELUG00000013775's gene model file
Pathways
Pathway IDPathway NameSource
els03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000013775's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSELUG00000013775cpsf37137.600ENSELUG00000004815ints118237.600
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSELUG00000013775cpsf39888.088ENSG00000119203CPSF3100100.000Homo_sapiens
ENSELUG00000013775cpsf37497.250ENSAPOG00000012241CPSF39197.250Acanthochromis_polyacanthus
ENSELUG00000013775cpsf39990.421ENSAPOG00000022087cpsf39990.421Acanthochromis_polyacanthus
ENSELUG00000013775cpsf39888.235ENSAMEG00000008493CPSF39988.235Ailuropoda_melanoleuca
ENSELUG00000013775cpsf39990.079ENSACIG00000023663CPSF39990.079Amphilophus_citrinellus
ENSELUG00000013775cpsf39987.402ENSACIG00000009846cpsf39987.402Amphilophus_citrinellus
ENSELUG00000013775cpsf39991.424ENSAOCG00000010077CPSF39991.424Amphiprion_ocellaris
ENSELUG00000013775cpsf39990.421ENSAOCG00000022056cpsf39694.333Amphiprion_ocellaris
ENSELUG00000013775cpsf39990.566ENSAPEG00000019526cpsf39991.629Amphiprion_percula
ENSELUG00000013775cpsf39991.424ENSAPEG00000021167CPSF39991.424Amphiprion_percula
ENSELUG00000013775cpsf39990.698ENSATEG00000003959cpsf39990.698Anabas_testudineus
ENSELUG00000013775cpsf39985.901ENSATEG00000014525CPSF39985.901Anabas_testudineus
ENSELUG00000013775cpsf39985.987ENSAPLG00000006941CPSF39887.761Anas_platyrhynchos
ENSELUG00000013775cpsf39983.491ENSACAG00000001759CPSF39985.647Anolis_carolinensis
ENSELUG00000013775cpsf39882.647ENSANAG00000031254CPSF39983.183Aotus_nancymaae
ENSELUG00000013775cpsf39990.079ENSACLG00000018846CPSF39990.079Astatotilapia_calliptera
ENSELUG00000013775cpsf39989.666ENSACLG00000014484cpsf39990.526Astatotilapia_calliptera
ENSELUG00000013775cpsf39991.715ENSAMXG00000004786cpsf39991.715Astyanax_mexicanus
ENSELUG00000013775cpsf39888.235ENSBTAG00000019735CPSF39988.235Bos_taurus
ENSELUG00000013775cpsf39058.044WBGene00013460cpsf-38958.044Caenorhabditis_elegans
ENSELUG00000013775cpsf39887.941ENSCJAG00000006276CPSF39987.941Callithrix_jacchus
ENSELUG00000013775cpsf39888.235ENSCAFG00000003375CPSF39588.235Canis_familiaris
ENSELUG00000013775cpsf38990.276ENSCAFG00020026799CPSF39990.276Canis_lupus_dingo
ENSELUG00000013775cpsf39888.235ENSCHIG00000013973CPSF39988.235Capra_hircus
ENSELUG00000013775cpsf39888.088ENSTSYG00000002967CPSF39988.088Carlito_syrichta
ENSELUG00000013775cpsf39985.197ENSCAPG00000013851CPSF39988.120Cavia_aperea
ENSELUG00000013775cpsf39888.088ENSCPOG00000011299CPSF39988.088Cavia_porcellus
ENSELUG00000013775cpsf39887.941ENSCCAG00000036730CPSF39987.988Cebus_capucinus
ENSELUG00000013775cpsf39885.882ENSCATG00000014770CPSF39992.919Cercocebus_atys
ENSELUG00000013775cpsf39887.941ENSCLAG00000002727CPSF39987.941Chinchilla_lanigera
ENSELUG00000013775cpsf39880.147ENSCSAG00000007125CPSF39980.147Chlorocebus_sabaeus
ENSELUG00000013775cpsf385100.000ENSCHOG00000000180CPSF38563.380Choloepus_hoffmanni
ENSELUG00000013775cpsf39987.954ENSCPBG00000014074CPSF39987.954Chrysemys_picta_bellii
ENSELUG00000013775cpsf39867.544ENSCING00000007214-9767.544Ciona_intestinalis
ENSELUG00000013775cpsf39878.363ENSCANG00000034435CPSF39978.363Colobus_angolensis_palliatus
ENSELUG00000013775cpsf39887.647ENSCGRG00001013134Cpsf39987.647Cricetulus_griseus_chok1gshd
ENSELUG00000013775cpsf39887.647ENSCGRG00000018319Cpsf39987.647Cricetulus_griseus_crigri
ENSELUG00000013775cpsf39990.421ENSCSEG00000002021CPSF39990.698Cynoglossus_semilaevis
ENSELUG00000013775cpsf39990.988ENSCVAG00000015067CPSF39990.988Cyprinodon_variegatus
ENSELUG00000013775cpsf39990.407ENSDARG00000027649cpsf39990.407Danio_rerio
ENSELUG00000013775cpsf39887.078ENSDNOG00000008940CPSF39587.078Dasypus_novemcinctus
ENSELUG00000013775cpsf39488.906ENSDORG00000014263Cpsf39988.906Dipodomys_ordii
ENSELUG00000013775cpsf39966.764FBgn0261065Cpsf739966.764Drosophila_melanogaster
ENSELUG00000013775cpsf39576.325ENSETEG00000003893CPSF39976.425Echinops_telfairi
ENSELUG00000013775cpsf39976.587ENSEBUG00000009018cpsf39976.728Eptatretus_burgeri
ENSELUG00000013775cpsf39888.235ENSEASG00005003970CPSF39988.235Equus_asinus_asinus
ENSELUG00000013775cpsf39888.235ENSECAG00000019911CPSF39692.580Equus_caballus
ENSELUG00000013775cpsf39873.088ENSEEUG00000015422CPSF39973.088Erinaceus_europaeus
ENSELUG00000013775cpsf39888.235ENSFCAG00000007852CPSF39988.235Felis_catus
ENSELUG00000013775cpsf39985.512ENSFALG00000006572CPSF39987.907Ficedula_albicollis
ENSELUG00000013775cpsf39987.225ENSFDAG00000006317CPSF39987.225Fukomys_damarensis
ENSELUG00000013775cpsf39989.115ENSFHEG00000014774cpsf39989.115Fundulus_heteroclitus
ENSELUG00000013775cpsf36371.324ENSFHEG00000012186CPSF39971.814Fundulus_heteroclitus
ENSELUG00000013775cpsf39990.843ENSGMOG00000003157cpsf39990.843Gadus_morhua
ENSELUG00000013775cpsf39987.482ENSGALG00000016424CPSF39987.482Gallus_gallus
ENSELUG00000013775cpsf39988.273ENSGAFG00000019449cpsf39988.273Gambusia_affinis
ENSELUG00000013775cpsf39991.001ENSGAFG00000008016CPSF39991.001Gambusia_affinis
ENSELUG00000013775cpsf37384.154ENSGAGG00000025583CPSF39384.368Gopherus_agassizii
ENSELUG00000013775cpsf39985.354ENSGGOG00000001757CPSF39197.210Gorilla_gorilla
ENSELUG00000013775cpsf36385.500ENSHBUG00000014332CPSF39985.500Haplochromis_burtoni
ENSELUG00000013775cpsf39990.421ENSHBUG00000001188cpsf39990.421Haplochromis_burtoni
ENSELUG00000013775cpsf39887.647ENSHGLG00000000666CPSF39987.647Heterocephalus_glaber_female
ENSELUG00000013775cpsf39887.647ENSHGLG00100007765CPSF39987.647Heterocephalus_glaber_male
ENSELUG00000013775cpsf39989.099ENSHCOG00000007251cpsf39989.099Hippocampus_comes
ENSELUG00000013775cpsf310088.986ENSHCOG00000015957CPSF39988.986Hippocampus_comes
ENSELUG00000013775cpsf39991.715ENSIPUG00000023488cpsf39991.715Ictalurus_punctatus
ENSELUG00000013775cpsf39887.794ENSSTOG00000004476CPSF39987.794Ictidomys_tridecemlineatus
ENSELUG00000013775cpsf39887.059ENSJJAG00000023415Cpsf39987.059Jaculus_jaculus
ENSELUG00000013775cpsf39990.552ENSKMAG00000007317CPSF39990.552Kryptolebias_marmoratus
ENSELUG00000013775cpsf39989.260ENSKMAG00000002806cpsf39989.260Kryptolebias_marmoratus
ENSELUG00000013775cpsf39982.849ENSLBEG00000020569cpsf39682.849Labrus_bergylta
ENSELUG00000013775cpsf35886.104ENSLBEG00000015018-9986.104Labrus_bergylta
ENSELUG00000013775cpsf39591.476ENSLBEG00000013492CPSF39991.476Labrus_bergylta
ENSELUG00000013775cpsf39981.739ENSLACG00000008308CPSF39981.739Latimeria_chalumnae
ENSELUG00000013775cpsf39990.896ENSLOCG00000016823cpsf39990.896Lepisosteus_oculatus
ENSELUG00000013775cpsf39887.021ENSLAFG00000009467CPSF39987.021Loxodonta_africana
ENSELUG00000013775cpsf39887.941ENSMFAG00000001339CPSF39494.387Macaca_fascicularis
ENSELUG00000013775cpsf39985.197ENSMMUG00000018038CPSF39987.597Macaca_mulatta
ENSELUG00000013775cpsf39989.806ENSMNEG00000039447CPSF39996.414Macaca_nemestrina
ENSELUG00000013775cpsf39888.088ENSMLEG00000026825CPSF39297.002Mandrillus_leucophaeus
ENSELUG00000013775cpsf39989.244ENSMAMG00000003076cpsf39989.244Mastacembelus_armatus
ENSELUG00000013775cpsf39990.476ENSMAMG00000008835CPSF39990.476Mastacembelus_armatus
ENSELUG00000013775cpsf39991.279ENSMZEG00005006258CPSF39991.279Maylandia_zebra
ENSELUG00000013775cpsf39990.421ENSMZEG00005014358cpsf39990.421Maylandia_zebra
ENSELUG00000013775cpsf39984.567ENSMGAG00000013995CPSF39987.519Meleagris_gallopavo
ENSELUG00000013775cpsf35879.412ENSMAUG00000000166Cpsf39979.412Mesocricetus_auratus
ENSELUG00000013775cpsf39882.991ENSMICG00000002363CPSF39982.991Microcebus_murinus
ENSELUG00000013775cpsf39884.412ENSMOCG00000020067Cpsf39984.412Microtus_ochrogaster
ENSELUG00000013775cpsf37878.723ENSMMOG00000011923CPSF38578.723Mola_mola
ENSELUG00000013775cpsf39982.962ENSMMOG00000018212CPSF39884.496Mola_mola
ENSELUG00000013775cpsf39886.754ENSMODG00000014703CPSF39986.754Monodelphis_domestica
ENSELUG00000013775cpsf39687.745ENSMALG00000011474CPSF39986.385Monopterus_albus
ENSELUG00000013775cpsf39990.116ENSMALG00000016416cpsf39990.116Monopterus_albus
ENSELUG00000013775cpsf39887.647MGP_CAROLIEiJ_G0017640Cpsf39987.647Mus_caroli
ENSELUG00000013775cpsf39887.647ENSMUSG00000054309Cpsf39697.034Mus_musculus
ENSELUG00000013775cpsf39887.500MGP_PahariEiJ_G0029397Cpsf39987.500Mus_pahari
ENSELUG00000013775cpsf39887.647MGP_SPRETEiJ_G0018481Cpsf39987.647Mus_spretus
ENSELUG00000013775cpsf39988.253ENSMPUG00000013213CPSF39988.253Mustela_putorius_furo
ENSELUG00000013775cpsf39887.812ENSMLUG00000010636CPSF39987.812Myotis_lucifugus
ENSELUG00000013775cpsf39887.500ENSNGAG00000019836Cpsf39987.500Nannospalax_galili
ENSELUG00000013775cpsf39990.079ENSNBRG00000010525CPSF39990.079Neolamprologus_brichardi
ENSELUG00000013775cpsf39990.131ENSNBRG00000004770cpsf39990.131Neolamprologus_brichardi
ENSELUG00000013775cpsf39887.941ENSNLEG00000013359CPSF39197.210Nomascus_leucogenys
ENSELUG00000013775cpsf39857.206ENSMEUG00000013117-9957.206Notamacropus_eugenii
ENSELUG00000013775cpsf39979.736ENSOPRG00000008902CPSF39979.736Ochotona_princeps
ENSELUG00000013775cpsf39888.088ENSODEG00000003129CPSF39988.088Octodon_degus
ENSELUG00000013775cpsf39990.421ENSONIG00000018812cpsf39990.421Oreochromis_niloticus
ENSELUG00000013775cpsf38885.943ENSOANG00000008577CPSF39985.943Ornithorhynchus_anatinus
ENSELUG00000013775cpsf39888.235ENSOCUG00000003728CPSF39988.235Oryctolagus_cuniculus
ENSELUG00000013775cpsf39988.244ENSORLG00000018854cpsf39988.244Oryzias_latipes
ENSELUG00000013775cpsf39988.099ENSORLG00020013331cpsf39988.099Oryzias_latipes_hni
ENSELUG00000013775cpsf39988.244ENSORLG00015011017cpsf39988.244Oryzias_latipes_hsok
ENSELUG00000013775cpsf39988.099ENSOMEG00000010647cpsf39688.099Oryzias_melastigma
ENSELUG00000013775cpsf39878.088ENSOGAG00000001680CPSF39978.088Otolemur_garnettii
ENSELUG00000013775cpsf39888.235ENSOARG00000015073CPSF39988.235Ovis_aries
ENSELUG00000013775cpsf39888.088ENSPPAG00000042457CPSF39197.210Pan_paniscus
ENSELUG00000013775cpsf39888.235ENSPPRG00000016790CPSF39988.235Panthera_pardus
ENSELUG00000013775cpsf39888.496ENSPTIG00000003920CPSF39988.496Panthera_tigris_altaica
ENSELUG00000013775cpsf39888.088ENSPTRG00000011638CPSF39197.210Pan_troglodytes
ENSELUG00000013775cpsf39887.941ENSPANG00000016798CPSF39494.387Papio_anubis
ENSELUG00000013775cpsf39993.469ENSPKIG00000023646cpsf39993.469Paramormyrops_kingsleyae
ENSELUG00000013775cpsf39887.225ENSPSIG00000016144CPSF39987.225Pelodiscus_sinensis
ENSELUG00000013775cpsf39089.005ENSPMGG00000006141-9984.370Periophthalmus_magnuspinnatus
ENSELUG00000013775cpsf36384.712ENSPMGG00000015311CPSF39984.712Periophthalmus_magnuspinnatus
ENSELUG00000013775cpsf39888.088ENSPEMG00000017668Cpsf39988.088Peromyscus_maniculatus_bairdii
ENSELUG00000013775cpsf37889.319ENSPMAG00000004841cpsf39989.319Petromyzon_marinus
ENSELUG00000013775cpsf39985.039ENSPCIG00000009823CPSF39888.190Phascolarctos_cinereus
ENSELUG00000013775cpsf39988.953ENSPFOG00000015922cpsf39988.953Poecilia_formosa
ENSELUG00000013775cpsf39990.566ENSPFOG00000010418-9990.566Poecilia_formosa
ENSELUG00000013775cpsf36385.149ENSPLAG00000021300-9985.891Poecilia_latipinna
ENSELUG00000013775cpsf39988.953ENSPLAG00000000882cpsf39988.953Poecilia_latipinna
ENSELUG00000013775cpsf39989.099ENSPMEG00000018309cpsf39989.099Poecilia_mexicana
ENSELUG00000013775cpsf39984.012ENSPREG00000004482CPSF39984.012Poecilia_reticulata
ENSELUG00000013775cpsf39988.712ENSPREG00000014875cpsf39988.712Poecilia_reticulata
ENSELUG00000013775cpsf39883.971ENSPPYG00000012666CPSF39983.971Pongo_abelii
ENSELUG00000013775cpsf38664.403ENSPCAG00000015042CPSF38865.725Procavia_capensis
ENSELUG00000013775cpsf38688.929ENSPCOG00000023016CPSF39788.929Propithecus_coquereli
ENSELUG00000013775cpsf39988.106ENSPVAG00000005324CPSF39988.106Pteropus_vampyrus
ENSELUG00000013775cpsf39990.421ENSPNYG00000004405cpsf39990.421Pundamilia_nyererei
ENSELUG00000013775cpsf38794.718ENSPNYG00000021047CPSF39294.718Pundamilia_nyererei
ENSELUG00000013775cpsf39991.279ENSPNAG00000023060cpsf39991.279Pygocentrus_nattereri
ENSELUG00000013775cpsf39887.647ENSRNOG00000052418Cpsf39987.647Rattus_norvegicus
ENSELUG00000013775cpsf39883.088ENSRBIG00000041615CPSF39984.186Rhinopithecus_bieti
ENSELUG00000013775cpsf39888.088ENSRROG00000033792CPSF39988.088Rhinopithecus_roxellana
ENSELUG00000013775cpsf38443.008YLR277CYSH18543.008Saccharomyces_cerevisiae
ENSELUG00000013775cpsf39981.377ENSSBOG00000027263CPSF39784.305Saimiri_boliviensis_boliviensis
ENSELUG00000013775cpsf39887.647ENSSHAG00000007024CPSF39987.647Sarcophilus_harrisii
ENSELUG00000013775cpsf39992.743ENSSFOG00015002108cpsf39992.743Scleropages_formosus
ENSELUG00000013775cpsf39590.411ENSSMAG00000020534CPSF39790.411Scophthalmus_maximus
ENSELUG00000013775cpsf39990.843ENSSDUG00000018498CPSF39990.843Seriola_dumerili
ENSELUG00000013775cpsf39990.566ENSSDUG00000002828cpsf39790.566Seriola_dumerili
ENSELUG00000013775cpsf39990.843ENSSLDG00000005234CPSF39990.843Seriola_lalandi_dorsalis
ENSELUG00000013775cpsf39990.566ENSSLDG00000008469cpsf39989.302Seriola_lalandi_dorsalis
ENSELUG00000013775cpsf38983.992ENSSARG00000005186CPSF39083.992Sorex_araneus
ENSELUG00000013775cpsf39983.861ENSSPUG00000015525CPSF39785.949Sphenodon_punctatus
ENSELUG00000013775cpsf39989.985ENSSPAG00000018579cpsf39989.985Stegastes_partitus
ENSELUG00000013775cpsf39990.843ENSSPAG00000002906CPSF39990.843Stegastes_partitus
ENSELUG00000013775cpsf39888.235ENSSSCG00000020799CPSF39988.235Sus_scrofa
ENSELUG00000013775cpsf39888.218ENSTGUG00000013016CPSF39988.218Taeniopygia_guttata
ENSELUG00000013775cpsf310088.696ENSTRUG00000007030cpsf39888.696Takifugu_rubripes
ENSELUG00000013775cpsf36376.441ENSTRUG00000013905CPSF39976.441Takifugu_rubripes
ENSELUG00000013775cpsf38490.634ENSTBEG00000002707CPSF38490.634Tupaia_belangeri
ENSELUG00000013775cpsf38674.029ENSTTRG00000000861CPSF38774.029Tursiops_truncatus
ENSELUG00000013775cpsf39588.702ENSUAMG00000007535CPSF39488.702Ursus_americanus
ENSELUG00000013775cpsf39985.512ENSUMAG00000003676CPSF39987.907Ursus_maritimus
ENSELUG00000013775cpsf39584.768ENSVPAG00000008041CPSF310087.697Vicugna_pacos
ENSELUG00000013775cpsf39888.235ENSVVUG00000002194CPSF39988.235Vulpes_vulpes
ENSELUG00000013775cpsf310086.686ENSXETG00000008263cpsf39986.686Xenopus_tropicalis
ENSELUG00000013775cpsf35883.827ENSXCOG00000000957-8784.636Xiphophorus_couchianus
ENSELUG00000013775cpsf39989.099ENSXCOG00000019695cpsf39989.099Xiphophorus_couchianus
ENSELUG00000013775cpsf39990.856ENSXMAG00000027291CPSF39990.856Xiphophorus_maculatus
ENSELUG00000013775cpsf39989.099ENSXMAG00000009784cpsf39989.099Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us