EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000014272 (Gene tree)
Gene ID: 105014698
Gene Symbol: zgc:152968
Alias: -
Full Name: RNA exonuclease 1 homolog
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 9154 bases
Position: chrLG13:33853800-33862953
Accession: 105014698
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000014204	RNase_T	PF00929.24	2.7e-07	1	1
ENSELUP00000035324	RNase_T	PF00929.24	2.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000022896	-	1530	-	ENSELUP00000035298	509 (aa)	-	-
ENSELUT00000022935	-	5217	XM_010877229	ENSELUP00000014204	1219 (aa)	XP_010875531	UPI000575E2B3
ENSELUT00000022921	-	5096	-	ENSELUP00000035324	1190 (aa)	-	-

Gene Model

Click here to download ENSELUG00000014272's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000014272's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000014272	zgc:152968	54	66.180	ENSAPOG00000005095	zgc:152968	75	66.180	Acanthochromis_polyacanthus
ENSELUG00000014272	zgc:152968	60	59.566	ENSACIG00000002527	zgc:152968	77	59.566	Amphilophus_citrinellus
ENSELUG00000014272	zgc:152968	84	63.443	ENSAOCG00000018049	-	98	63.443	Amphiprion_ocellaris
ENSELUG00000014272	zgc:152968	94	43.431	ENSAPEG00000012559	zgc:152968	99	43.347	Amphiprion_percula
ENSELUG00000014272	zgc:152968	77	53.428	ENSACLG00000020524	-	59	69.417	Astatotilapia_calliptera
ENSELUG00000014272	zgc:152968	64	68.448	ENSCVAG00000015400	zgc:152968	74	68.448	Cyprinodon_variegatus
ENSELUG00000014272	zgc:152968	100	44.282	ENSDARG00000037002	zgc:152968	94	42.857	Danio_rerio
ENSELUG00000014272	zgc:152968	63	60.482	ENSFHEG00000003641	-	77	60.482	Fundulus_heteroclitus
ENSELUG00000014272	zgc:152968	64	70.909	ENSGAFG00000016810	-	85	71.560	Gambusia_affinis
ENSELUG00000014272	zgc:152968	75	52.744	ENSHBUG00000007524	-	71	54.028	Haplochromis_burtoni
ENSELUG00000014272	zgc:152968	54	67.482	ENSIPUG00000004633	zgc:152968	70	67.482	Ictalurus_punctatus
ENSELUG00000014272	zgc:152968	80	62.376	ENSLBEG00000026485	zgc:152968	69	62.376	Labrus_bergylta
ENSELUG00000014272	zgc:152968	91	56.890	ENSMAMG00000005920	-	99	56.890	Mastacembelus_armatus
ENSELUG00000014272	zgc:152968	77	53.428	ENSMZEG00005013783	-	73	54.692	Maylandia_zebra
ENSELUG00000014272	zgc:152968	83	70.531	ENSMMOG00000018072	zgc:152968	96	70.531	Mola_mola
ENSELUG00000014272	zgc:152968	83	64.516	ENSMALG00000003536	-	98	64.516	Monopterus_albus
ENSELUG00000014272	zgc:152968	75	54.899	ENSONIG00000016897	-	73	54.899	Oreochromis_niloticus
ENSELUG00000014272	zgc:152968	69	51.804	ENSORLG00020012504	-	76	52.113	Oryzias_latipes_hni
ENSELUG00000014272	zgc:152968	64	64.461	ENSOMEG00000008840	-	79	64.461	Oryzias_melastigma
ENSELUG00000014272	zgc:152968	68	65.101	ENSPFOG00000006104	-	81	65.101	Poecilia_formosa
ENSELUG00000014272	zgc:152968	69	50.531	ENSPLAG00000005034	-	74	65.566	Poecilia_latipinna
ENSELUG00000014272	zgc:152968	77	50.398	ENSPMEG00000018012	-	81	50.663	Poecilia_mexicana
ENSELUG00000014272	zgc:152968	77	52.486	ENSPREG00000007481	-	98	60.976	Poecilia_reticulata
ENSELUG00000014272	zgc:152968	56	53.644	ENSSFOG00015023869	zgc:152968	62	68.689	Scleropages_formosus
ENSELUG00000014272	zgc:152968	99	46.095	ENSSMAG00000008149	-	100	46.296	Scophthalmus_maximus
ENSELUG00000014272	zgc:152968	92	64.579	ENSSDUG00000022323	-	98	64.579	Seriola_dumerili
ENSELUG00000014272	zgc:152968	91	65.639	ENSSLDG00000018799	zgc:152968	97	65.639	Seriola_lalandi_dorsalis
ENSELUG00000014272	zgc:152968	80	60.511	ENSSPAG00000007632	-	94	60.707	Stegastes_partitus
ENSELUG00000014272	zgc:152968	83	49.274	ENSTRUG00000025441	zgc:152968	80	53.005	Takifugu_rubripes
ENSELUG00000014272	zgc:152968	79	48.408	ENSXMAG00000026483	-	83	48.793	Xiphophorus_maculatus