EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000014284 (Gene tree)
Gene ID: 105020683
Gene Symbol: polr2a
Alias: im:7136071
Full Name: DNA-directed RNA polymerase II subunit RPB1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 12115 bases
Position: chrLG24:14550231-14562345
Accession: 105020683
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000014179	RNA_pol_Rpb1_5	PF04998.17	9.1e-101	1	1
ENSELUP00000014179	RNA_pol_Rpb1_4	PF05000.17	1.6e-37	1	1
ENSELUP00000014179	RNA_pol_Rpb1_2	PF00623.20	1.4e-74	1	1
ENSELUP00000014179	RNA_pol_Rpb1_3	PF04983.18	9.2e-50	1	1
ENSELUP00000014179	RNA_pol_Rpb1_1	PF04997.12	6.7e-108	1	1
ENSELUP00000014179	RNA_pol_Rpb1_7	PF04990.12	1e-51	1	1
ENSELUP00000014179	RNA_pol_Rpb1_6	PF04992.14	2e-66	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000038820	-	5679	XM_013140420	ENSELUP00000014179	1892 (aa)	XP_012995874	-

Gene Model

Click here to download ENSELUG00000014284's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000014284's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000014284	polr2a	59	31.833	ENSELUG00000012769	polr1a	69	32.047
ENSELUG00000014284	polr2a	69	37.390	ENSELUG00000014016	polr3a	90	37.390

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000014284	polr2a	84	93.218	ENSAPOG00000006552	polr2a	90	92.540	Acanthochromis_polyacanthus
ENSELUG00000014284	polr2a	84	90.456	ENSAMEG00000016265	-	89	89.729	Ailuropoda_melanoleuca
ENSELUG00000014284	polr2a	84	95.205	ENSACIG00000015982	polr2a	88	95.205	Amphilophus_citrinellus
ENSELUG00000014284	polr2a	84	95.521	ENSAOCG00000004255	polr2a	92	95.521	Amphiprion_ocellaris
ENSELUG00000014284	polr2a	84	95.521	ENSAPEG00000012623	polr2a	88	95.521	Amphiprion_percula
ENSELUG00000014284	polr2a	84	95.016	ENSATEG00000019644	polr2a	88	95.016	Anabas_testudineus
ENSELUG00000014284	polr2a	84	90.988	ENSACAG00000014561	POLR2A	89	90.450	Anolis_carolinensis
ENSELUG00000014284	polr2a	84	92.866	ENSANAG00000020093	-	88	92.875	Aotus_nancymaae
ENSELUG00000014284	polr2a	84	94.763	ENSACLG00000006735	polr2a	88	94.763	Astatotilapia_calliptera
ENSELUG00000014284	polr2a	84	95.457	ENSAMXG00000020046	polr2a	88	95.457	Astyanax_mexicanus
ENSELUG00000014284	polr2a	84	90.685	ENSBTAG00000046765	POLR2A	89	90.018	Bos_taurus
ENSELUG00000014284	polr2a	84	90.746	ENSCAFG00000016532	POLR2A	99	90.080	Canis_familiaris
ENSELUG00000014284	polr2a	84	92.298	ENSCAFG00020007929	-	88	92.308	Canis_lupus_dingo
ENSELUG00000014284	polr2a	84	90.685	ENSCHIG00000027173	-	89	90.018	Capra_hircus
ENSELUG00000014284	polr2a	84	92.866	ENSTSYG00000012803	-	88	92.875	Carlito_syrichta
ENSELUG00000014284	polr2a	98	82.030	ENSCAPG00000001882	-	88	89.259	Cavia_aperea
ENSELUG00000014284	polr2a	89	92.783	ENSCPOG00000014812	-	88	91.866	Cavia_porcellus
ENSELUG00000014284	polr2a	84	92.866	ENSCCAG00000020938	-	88	92.875	Cebus_capucinus
ENSELUG00000014284	polr2a	84	92.172	ENSCATG00000013680	-	88	92.182	Cercocebus_atys
ENSELUG00000014284	polr2a	84	92.740	ENSCLAG00000012196	-	88	92.749	Chinchilla_lanigera
ENSELUG00000014284	polr2a	84	82.209	ENSCSAG00000011644	-	89	81.434	Chlorocebus_sabaeus
ENSELUG00000014284	polr2a	84	87.099	ENSCPBG00000012697	POLR2A	99	84.393	Chrysemys_picta_bellii
ENSELUG00000014284	polr2a	94	74.557	ENSCSAVG00000008334	-	99	75.094	Ciona_savignyi
ENSELUG00000014284	polr2a	84	91.312	ENSCANG00000010622	-	89	91.323	Colobus_angolensis_palliatus
ENSELUG00000014284	polr2a	84	87.753	ENSCGRG00001003538	Polr2a	88	87.768	Cricetulus_griseus_chok1gshd
ENSELUG00000014284	polr2a	84	89.275	ENSCGRG00000012105	Polr2a	93	89.288	Cricetulus_griseus_crigri
ENSELUG00000014284	polr2a	84	94.763	ENSCSEG00000002635	polr2a	88	94.763	Cynoglossus_semilaevis
ENSELUG00000014284	polr2a	84	93.157	ENSCVAG00000005156	polr2a	89	92.478	Cyprinodon_variegatus
ENSELUG00000014284	polr2a	84	92.914	ENSDARG00000099966	polr2a	89	92.237	Danio_rerio
ENSELUG00000014284	polr2a	84	87.909	ENSDNOG00000016482	-	88	87.246	Dasypus_novemcinctus
ENSELUG00000014284	polr2a	84	92.866	ENSDORG00000008667	Polr2a	88	92.875	Dipodomys_ordii
ENSELUG00000014284	polr2a	99	65.882	FBgn0003277	RpII215	99	73.593	Drosophila_melanogaster
ENSELUG00000014284	polr2a	94	86.776	ENSETEG00000002540	-	90	86.916	Echinops_telfairi
ENSELUG00000014284	polr2a	83	84.129	ENSEBUG00000013967	polr2a	91	83.447	Eptatretus_burgeri
ENSELUG00000014284	polr2a	84	90.846	ENSEASG00005019114	-	90	90.858	Equus_asinus_asinus
ENSELUG00000014284	polr2a	84	90.685	ENSECAG00000018485	POLR2A	89	90.018	Equus_caballus
ENSELUG00000014284	polr2a	82	92.639	ENSEEUG00000001154	-	95	92.639	Erinaceus_europaeus
ENSELUG00000014284	polr2a	84	92.226	ENSFDAG00000008287	-	88	92.235	Fukomys_damarensis
ENSELUG00000014284	polr2a	90	93.157	ENSFHEG00000001768	polr2a	94	92.478	Fundulus_heteroclitus
ENSELUG00000014284	polr2a	88	90.299	ENSGMOG00000007725	polr2a	99	90.313	Gadus_morhua
ENSELUG00000014284	polr2a	100	93.218	ENSGAFG00000005389	polr2a	100	92.540	Gambusia_affinis
ENSELUG00000014284	polr2a	99	89.844	ENSGACG00000019366	polr2a	99	89.595	Gasterosteus_aculeatus
ENSELUG00000014284	polr2a	84	90.068	ENSGGOG00000014800	-	96	91.886	Gorilla_gorilla
ENSELUG00000014284	polr2a	90	92.540	ENSHBUG00000018937	polr2a	94	91.862	Haplochromis_burtoni
ENSELUG00000014284	polr2a	84	92.929	ENSHGLG00000012381	POLR2A	88	92.938	Heterocephalus_glaber_female
ENSELUG00000014284	polr2a	84	92.929	ENSHGLG00100014843	POLR2A	88	92.938	Heterocephalus_glaber_male
ENSELUG00000014284	polr2a	84	93.095	ENSHCOG00000011874	polr2a	89	93.033	Hippocampus_comes
ENSELUG00000014284	polr2a	84	95.205	ENSIPUG00000002613	Polr2a	88	95.205	Ictalurus_punctatus
ENSELUG00000014284	polr2a	84	92.866	ENSSTOG00000001304	-	88	92.875	Ictidomys_tridecemlineatus
ENSELUG00000014284	polr2a	84	92.929	ENSJJAG00000013049	Polr2a	88	92.938	Jaculus_jaculus
ENSELUG00000014284	polr2a	79	93.025	ENSKMAG00000016343	polr2a	85	93.025	Kryptolebias_marmoratus
ENSELUG00000014284	polr2a	84	95.394	ENSLBEG00000027652	polr2a	88	95.394	Labrus_bergylta
ENSELUG00000014284	polr2a	82	82.212	ENSLACG00000012071	POLR2A	88	81.784	Latimeria_chalumnae
ENSELUG00000014284	polr2a	86	90.232	ENSLOCG00000013863	polr2a	93	92.350	Lepisosteus_oculatus
ENSELUG00000014284	polr2a	84	90.685	ENSLAFG00000008626	-	93	90.018	Loxodonta_africana
ENSELUG00000014284	polr2a	52	92.143	ENSMFAG00000007042	-	99	92.143	Macaca_fascicularis
ENSELUG00000014284	polr2a	84	92.866	ENSMMUG00000023620	-	92	90.018	Macaca_mulatta
ENSELUG00000014284	polr2a	84	92.424	ENSMNEG00000040407	-	88	92.434	Macaca_nemestrina
ENSELUG00000014284	polr2a	82	88.410	ENSMLEG00000030263	-	99	92.143	Mandrillus_leucophaeus
ENSELUG00000014284	polr2a	84	92.787	ENSMAMG00000003351	polr2a	89	92.109	Mastacembelus_armatus
ENSELUG00000014284	polr2a	84	93.754	ENSMZEG00005021429	polr2a	88	93.754	Maylandia_zebra
ENSELUG00000014284	polr2a	52	93.279	ENSMAUG00000021055	-	99	93.279	Mesocricetus_auratus
ENSELUG00000014284	polr2a	84	91.987	ENSMICG00000013372	-	98	92.638	Microcebus_murinus
ENSELUG00000014284	polr2a	93	90.485	ENSMOCG00000018279	Polr2a	93	90.497	Microtus_ochrogaster
ENSELUG00000014284	polr2a	93	92.232	ENSMMOG00000012515	polr2a	91	91.554	Mola_mola
ENSELUG00000014284	polr2a	84	90.685	ENSMODG00000007009	-	89	90.142	Monodelphis_domestica
ENSELUG00000014284	polr2a	93	93.103	ENSMALG00000008716	polr2a	91	92.417	Monopterus_albus
ENSELUG00000014284	polr2a	84	92.866	MGP_CAROLIEiJ_G0016587	Polr2a	88	92.875	Mus_caroli
ENSELUG00000014284	polr2a	84	92.866	ENSMUSG00000005198	Polr2a	88	92.875	Mus_musculus
ENSELUG00000014284	polr2a	84	88.698	MGP_PahariEiJ_G0017718	Polr2a	89	88.037	Mus_pahari
ENSELUG00000014284	polr2a	84	92.866	MGP_SPRETEiJ_G0017423	Polr2a	88	92.875	Mus_spretus
ENSELUG00000014284	polr2a	84	90.685	ENSMPUG00000009648	-	89	90.018	Mustela_putorius_furo
ENSELUG00000014284	polr2a	84	90.080	ENSMLUG00000009088	-	89	89.415	Myotis_lucifugus
ENSELUG00000014284	polr2a	84	92.866	ENSNGAG00000002543	Polr2a	88	92.875	Nannospalax_galili
ENSELUG00000014284	polr2a	84	95.016	ENSNBRG00000002005	polr2a	88	95.016	Neolamprologus_brichardi
ENSELUG00000014284	polr2a	84	92.866	ENSNLEG00000009460	-	88	92.875	Nomascus_leucogenys
ENSELUG00000014284	polr2a	84	94.342	ENSMEUG00000008611	-	97	84.088	Notamacropus_eugenii
ENSELUG00000014284	polr2a	82	90.521	ENSOPRG00000015116	-	99	89.900	Ochotona_princeps
ENSELUG00000014284	polr2a	84	89.457	ENSODEG00000017674	-	90	89.774	Octodon_degus
ENSELUG00000014284	polr2a	84	92.848	ENSONIG00000009231	polr2a	89	92.170	Oreochromis_niloticus
ENSELUG00000014284	polr2a	94	86.483	ENSOCUG00000017929	-	100	89.895	Oryctolagus_cuniculus
ENSELUG00000014284	polr2a	84	95.079	ENSORLG00000006431	polr2a	88	95.079	Oryzias_latipes
ENSELUG00000014284	polr2a	84	95.079	ENSORLG00020010235	polr2a	88	95.079	Oryzias_latipes_hni
ENSELUG00000014284	polr2a	84	95.079	ENSORLG00015007075	polr2a	88	95.079	Oryzias_latipes_hsok
ENSELUG00000014284	polr2a	82	95.119	ENSOMEG00000010713	polr2a	99	95.119	Oryzias_melastigma
ENSELUG00000014284	polr2a	84	90.685	ENSOGAG00000033608	-	89	90.018	Otolemur_garnettii
ENSELUG00000014284	polr2a	86	90.685	ENSOARG00000013874	-	94	90.018	Ovis_aries
ENSELUG00000014284	polr2a	83	92.757	ENSPPAG00000043734	-	89	92.371	Pan_paniscus
ENSELUG00000014284	polr2a	84	92.866	ENSPTRG00000008691	POLR2A	88	92.875	Pan_troglodytes
ENSELUG00000014284	polr2a	84	92.172	ENSPANG00000024099	-	88	92.182	Papio_anubis
ENSELUG00000014284	polr2a	79	95.291	ENSPKIG00000005727	polr2a	85	95.291	Paramormyrops_kingsleyae
ENSELUG00000014284	polr2a	85	89.312	ENSPSIG00000014006	POLR2A	99	89.163	Pelodiscus_sinensis
ENSELUG00000014284	polr2a	98	94.434	ENSPMGG00000019734	polr2a	100	94.890	Periophthalmus_magnuspinnatus
ENSELUG00000014284	polr2a	84	92.866	ENSPEMG00000012521	Polr2a	88	92.875	Peromyscus_maniculatus_bairdii
ENSELUG00000014284	polr2a	84	90.691	ENSPCIG00000028851	-	82	90.136	Phascolarctos_cinereus
ENSELUG00000014284	polr2a	84	93.157	ENSPFOG00000007890	polr2a	91	92.478	Poecilia_formosa
ENSELUG00000014284	polr2a	84	93.447	ENSPLAG00000007399	polr2a	91	93.384	Poecilia_latipinna
ENSELUG00000014284	polr2a	84	95.394	ENSPMEG00000002071	polr2a	91	95.394	Poecilia_mexicana
ENSELUG00000014284	polr2a	84	95.331	ENSPREG00000013122	polr2a	88	95.331	Poecilia_reticulata
ENSELUG00000014284	polr2a	84	90.685	ENSPPYG00000007924	-	89	90.018	Pongo_abelii
ENSELUG00000014284	polr2a	75	93.561	ENSPCAG00000006951	-	81	93.561	Procavia_capensis
ENSELUG00000014284	polr2a	84	92.866	ENSPCOG00000025260	-	88	92.875	Propithecus_coquereli
ENSELUG00000014284	polr2a	84	90.376	ENSPVAG00000005069	-	89	89.710	Pteropus_vampyrus
ENSELUG00000014284	polr2a	84	92.602	ENSPNYG00000022340	polr2a	89	91.924	Pundamilia_nyererei
ENSELUG00000014284	polr2a	84	93.465	ENSPNAG00000011237	polr2a	89	92.787	Pygocentrus_nattereri
ENSELUG00000014284	polr2a	84	90.746	ENSRNOG00000028834	Polr2a	89	90.080	Rattus_norvegicus
ENSELUG00000014284	polr2a	84	92.866	ENSRBIG00000002471	-	90	92.875	Rhinopithecus_bieti
ENSELUG00000014284	polr2a	84	90.685	ENSRROG00000029583	-	89	90.018	Rhinopithecus_roxellana
ENSELUG00000014284	polr2a	84	49.751	YDL140C	RPO21	99	52.800	Saccharomyces_cerevisiae
ENSELUG00000014284	polr2a	84	92.866	ENSSBOG00000000808	-	88	92.875	Saimiri_boliviensis_boliviensis
ENSELUG00000014284	polr2a	84	90.685	ENSSHAG00000002858	-	91	90.142	Sarcophilus_harrisii
ENSELUG00000014284	polr2a	84	95.773	ENSSFOG00015023275	polr2a	88	95.773	Scleropages_formosus
ENSELUG00000014284	polr2a	84	92.910	ENSSMAG00000009137	polr2a	89	92.232	Scophthalmus_maximus
ENSELUG00000014284	polr2a	84	95.331	ENSSDUG00000020466	polr2a	88	95.331	Seriola_dumerili
ENSELUG00000014284	polr2a	84	95.268	ENSSLDG00000020613	polr2a	88	95.268	Seriola_lalandi_dorsalis
ENSELUG00000014284	polr2a	87	86.964	ENSSARG00000005875	-	99	86.823	Sorex_araneus
ENSELUG00000014284	polr2a	100	93.280	ENSSPAG00000016741	polr2a	93	92.602	Stegastes_partitus
ENSELUG00000014284	polr2a	84	89.759	ENSSSCG00000028278	-	89	89.094	Sus_scrofa
ENSELUG00000014284	polr2a	80	93.260	ENSTRUG00000012320	polr2a	81	93.260	Takifugu_rubripes
ENSELUG00000014284	polr2a	88	91.615	ENSTNIG00000010136	polr2a	100	89.655	Tetraodon_nigroviridis
ENSELUG00000014284	polr2a	75	93.430	ENSTBEG00000013294	-	58	93.430	Tupaia_belangeri
ENSELUG00000014284	polr2a	84	89.143	ENSTTRG00000014273	-	89	88.478	Tursiops_truncatus
ENSELUG00000014284	polr2a	91	92.569	ENSUAMG00000014866	-	88	92.579	Ursus_americanus
ENSELUG00000014284	polr2a	77	88.158	ENSUMAG00000015732	-	87	88.012	Ursus_maritimus
ENSELUG00000014284	polr2a	57	95.109	ENSVPAG00000008842	-	76	95.109	Vicugna_pacos
ENSELUG00000014284	polr2a	84	90.746	ENSVVUG00000027878	-	90	90.080	Vulpes_vulpes
ENSELUG00000014284	polr2a	83	90.119	ENSXETG00000012465	polr2a	88	89.576	Xenopus_tropicalis
ENSELUG00000014284	polr2a	88	95.331	ENSXCOG00000001804	polr2a	88	95.331	Xiphophorus_couchianus
ENSELUG00000014284	polr2a	84	95.331	ENSXMAG00000015687	polr2a	88	95.331	Xiphophorus_maculatus