EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000014301 (Gene tree)
Gene ID: 105020935
Gene Symbol: LSM6
Alias: zgc:92379
Full Name: LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 1735 bases
Position: chrLG25:11911009-11912743
Accession: 105020935
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000035331	LSM	PF01423.22	8.6e-18	1	1
ENSELUP00000035340	LSM	PF01423.22	8.6e-18	1	1
ENSELUP00000014192	LSM	PF01423.22	1.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000022954	-	1389	-	ENSELUP00000035340	80 (aa)	-	C1BYP5
ENSELUT00000022942	-	847	XM_010888301	ENSELUP00000035331	80 (aa)	XP_010886603	C1BYP5
ENSELUT00000022914	-	711	-	ENSELUP00000014192	88 (aa)	-	-

Gene Model

Click here to download ENSELUG00000014301's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03018	RNA degradation	KEGG
els03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000014301's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000014301	LSM6	83	46.970	ENSELUG00000007737	RUXF	76	46.970
ENSELUG00000014301	LSM6	83	48.485	ENSELUG00000003121	RUXF	77	48.485

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000014301	LSM6	100	96.250	ENSG00000164167	LSM6	100	96.250	Homo_sapiens
ENSELUG00000014301	LSM6	100	97.500	ENSAPOG00000019832	lsm6	100	97.500	Acanthochromis_polyacanthus
ENSELUG00000014301	LSM6	100	96.250	ENSAMEG00000016671	LSM6	100	96.250	Ailuropoda_melanoleuca
ENSELUG00000014301	LSM6	100	97.500	ENSACIG00000016711	lsm6	100	97.500	Amphilophus_citrinellus
ENSELUG00000014301	LSM6	100	97.500	ENSAOCG00000002110	lsm6	52	97.500	Amphiprion_ocellaris
ENSELUG00000014301	LSM6	100	97.500	ENSAPEG00000023992	lsm6	100	97.500	Amphiprion_percula
ENSELUG00000014301	LSM6	100	97.500	ENSATEG00000012610	lsm6	100	97.500	Anabas_testudineus
ENSELUG00000014301	LSM6	96	96.104	ENSAPLG00000012594	LSM6	99	96.104	Anas_platyrhynchos
ENSELUG00000014301	LSM6	100	96.250	ENSACAG00000004004	LSM6	100	96.250	Anolis_carolinensis
ENSELUG00000014301	LSM6	100	96.250	ENSANAG00000030568	-	100	96.250	Aotus_nancymaae
ENSELUG00000014301	LSM6	100	83.750	ENSANAG00000021839	-	100	83.750	Aotus_nancymaae
ENSELUG00000014301	LSM6	100	97.500	ENSACLG00000025621	lsm6	100	97.500	Astatotilapia_calliptera
ENSELUG00000014301	LSM6	100	100.000	ENSAMXG00000038738	lsm6	100	100.000	Astyanax_mexicanus
ENSELUG00000014301	LSM6	100	90.000	ENSBTAG00000052085	-	100	90.000	Bos_taurus
ENSELUG00000014301	LSM6	100	96.250	ENSBTAG00000014060	LSM6	100	96.250	Bos_taurus
ENSELUG00000014301	LSM6	94	78.667	WBGene00003080	lsm-6	97	78.667	Caenorhabditis_elegans
ENSELUG00000014301	LSM6	100	96.250	ENSCJAG00000002482	LSM6	100	96.250	Callithrix_jacchus
ENSELUG00000014301	LSM6	100	96.250	ENSCAFG00000007738	LSM6	100	96.250	Canis_familiaris
ENSELUG00000014301	LSM6	100	96.250	ENSCAFG00020025902	LSM6	100	96.250	Canis_lupus_dingo
ENSELUG00000014301	LSM6	100	81.250	ENSCHIG00000024198	-	95	81.250	Capra_hircus
ENSELUG00000014301	LSM6	89	97.183	ENSCHIG00000012864	-	100	97.183	Capra_hircus
ENSELUG00000014301	LSM6	100	96.250	ENSCHIG00000010334	-	100	96.250	Capra_hircus
ENSELUG00000014301	LSM6	100	96.250	ENSTSYG00000026972	LSM6	100	96.250	Carlito_syrichta
ENSELUG00000014301	LSM6	80	89.062	ENSTSYG00000012759	-	84	89.062	Carlito_syrichta
ENSELUG00000014301	LSM6	100	96.250	ENSCAPG00000008104	LSM6	100	96.250	Cavia_aperea
ENSELUG00000014301	LSM6	81	93.846	ENSCAPG00000011179	-	100	93.846	Cavia_aperea
ENSELUG00000014301	LSM6	100	96.250	ENSCPOG00000032655	LSM6	100	96.250	Cavia_porcellus
ENSELUG00000014301	LSM6	100	96.250	ENSCCAG00000036437	LSM6	100	96.250	Cebus_capucinus
ENSELUG00000014301	LSM6	99	94.937	ENSCCAG00000020665	-	99	94.937	Cebus_capucinus
ENSELUG00000014301	LSM6	100	73.750	ENSCATG00000038799	-	100	73.750	Cercocebus_atys
ENSELUG00000014301	LSM6	100	96.250	ENSCATG00000002770	-	100	96.250	Cercocebus_atys
ENSELUG00000014301	LSM6	100	96.250	ENSCLAG00000005495	LSM6	100	96.250	Chinchilla_lanigera
ENSELUG00000014301	LSM6	89	77.465	ENSCLAG00000005685	-	100	77.465	Chinchilla_lanigera
ENSELUG00000014301	LSM6	100	96.250	ENSCSAG00000003421	LSM6	100	96.250	Chlorocebus_sabaeus
ENSELUG00000014301	LSM6	100	76.250	ENSCHOG00000003420	LSM6	100	76.250	Choloepus_hoffmanni
ENSELUG00000014301	LSM6	100	96.250	ENSCPBG00000027472	LSM6	84	96.250	Chrysemys_picta_bellii
ENSELUG00000014301	LSM6	95	94.737	ENSCING00000019152	-	93	94.737	Ciona_intestinalis
ENSELUG00000014301	LSM6	95	96.053	ENSCSAVG00000002065	-	93	96.053	Ciona_savignyi
ENSELUG00000014301	LSM6	100	70.000	ENSCANG00000035214	-	100	70.000	Colobus_angolensis_palliatus
ENSELUG00000014301	LSM6	100	96.250	ENSCANG00000006849	-	100	96.250	Colobus_angolensis_palliatus
ENSELUG00000014301	LSM6	100	96.250	ENSCANG00000041263	-	100	96.250	Colobus_angolensis_palliatus
ENSELUG00000014301	LSM6	100	96.250	ENSCGRG00001017142	Lsm6	100	96.250	Cricetulus_griseus_chok1gshd
ENSELUG00000014301	LSM6	100	96.250	ENSCGRG00000008320	Lsm6	100	96.250	Cricetulus_griseus_crigri
ENSELUG00000014301	LSM6	100	97.500	ENSCSEG00000000423	lsm6	100	97.500	Cynoglossus_semilaevis
ENSELUG00000014301	LSM6	100	97.500	ENSCVAG00000001592	lsm6	100	97.500	Cyprinodon_variegatus
ENSELUG00000014301	LSM6	100	100.000	ENSDARG00000036995	lsm6	100	100.000	Danio_rerio
ENSELUG00000014301	LSM6	100	95.000	ENSDNOG00000044848	-	100	95.000	Dasypus_novemcinctus
ENSELUG00000014301	LSM6	86	97.101	ENSDNOG00000040186	-	86	87.500	Dasypus_novemcinctus
ENSELUG00000014301	LSM6	100	96.250	ENSDORG00000000933	Lsm6	100	96.250	Dipodomys_ordii
ENSELUG00000014301	LSM6	96	81.818	FBgn0034564	CG9344	97	81.818	Drosophila_melanogaster
ENSELUG00000014301	LSM6	60	93.750	ENSETEG00000013098	LSM6	100	93.750	Echinops_telfairi
ENSELUG00000014301	LSM6	100	95.000	ENSEBUG00000017073	lsm6	100	95.000	Eptatretus_burgeri
ENSELUG00000014301	LSM6	86	97.101	ENSEASG00005001533	LSM6	72	97.101	Equus_asinus_asinus
ENSELUG00000014301	LSM6	100	96.250	ENSECAG00000021036	LSM6	100	96.250	Equus_caballus
ENSELUG00000014301	LSM6	99	68.354	ENSEEUG00000002101	LSM6	100	68.354	Erinaceus_europaeus
ENSELUG00000014301	LSM6	100	96.250	ENSFCAG00000003047	LSM6	100	96.250	Felis_catus
ENSELUG00000014301	LSM6	100	96.250	ENSFALG00000005509	LSM6	92	96.250	Ficedula_albicollis
ENSELUG00000014301	LSM6	100	96.250	ENSFDAG00000020913	-	100	96.250	Fukomys_damarensis
ENSELUG00000014301	LSM6	100	85.000	ENSFDAG00000019073	-	100	85.000	Fukomys_damarensis
ENSELUG00000014301	LSM6	100	97.500	ENSFHEG00000007948	lsm6	100	97.500	Fundulus_heteroclitus
ENSELUG00000014301	LSM6	100	97.500	ENSGMOG00000015550	lsm6	100	97.500	Gadus_morhua
ENSELUG00000014301	LSM6	100	96.250	ENSGALG00000009985	LSM6	100	96.250	Gallus_gallus
ENSELUG00000014301	LSM6	100	97.500	ENSGAFG00000017763	lsm6	100	97.500	Gambusia_affinis
ENSELUG00000014301	LSM6	99	98.734	ENSGACG00000017223	lsm6	99	98.734	Gasterosteus_aculeatus
ENSELUG00000014301	LSM6	100	96.250	ENSGAGG00000020980	LSM6	100	96.250	Gopherus_agassizii
ENSELUG00000014301	LSM6	100	96.250	ENSGGOG00000001310	LSM6	100	96.250	Gorilla_gorilla
ENSELUG00000014301	LSM6	100	97.500	ENSHBUG00000008618	lsm6	100	97.500	Haplochromis_burtoni
ENSELUG00000014301	LSM6	100	96.250	ENSHGLG00000000205	LSM6	100	96.250	Heterocephalus_glaber_female
ENSELUG00000014301	LSM6	100	96.250	ENSHGLG00100014341	LSM6	100	96.250	Heterocephalus_glaber_male
ENSELUG00000014301	LSM6	100	97.500	ENSHCOG00000005591	lsm6	100	97.500	Hippocampus_comes
ENSELUG00000014301	LSM6	100	98.750	ENSIPUG00000004508	lsm6	100	98.750	Ictalurus_punctatus
ENSELUG00000014301	LSM6	100	96.250	ENSSTOG00000002678	LSM6	100	96.250	Ictidomys_tridecemlineatus
ENSELUG00000014301	LSM6	100	86.250	ENSJJAG00000011211	-	100	86.250	Jaculus_jaculus
ENSELUG00000014301	LSM6	96	76.623	ENSJJAG00000016942	-	97	76.623	Jaculus_jaculus
ENSELUG00000014301	LSM6	100	96.250	ENSJJAG00000013845	-	100	96.250	Jaculus_jaculus
ENSELUG00000014301	LSM6	100	97.500	ENSKMAG00000004105	lsm6	100	97.500	Kryptolebias_marmoratus
ENSELUG00000014301	LSM6	100	97.500	ENSLBEG00000018441	lsm6	100	97.500	Labrus_bergylta
ENSELUG00000014301	LSM6	100	96.250	ENSLACG00000006937	LSM6	100	96.250	Latimeria_chalumnae
ENSELUG00000014301	LSM6	100	98.750	ENSLOCG00000017683	-	100	98.750	Lepisosteus_oculatus
ENSELUG00000014301	LSM6	100	100.000	ENSLOCG00000008852	lsm6	100	100.000	Lepisosteus_oculatus
ENSELUG00000014301	LSM6	100	96.250	ENSLAFG00000001952	LSM6	100	96.250	Loxodonta_africana
ENSELUG00000014301	LSM6	100	96.250	ENSMFAG00000033073	LSM6	100	96.250	Macaca_fascicularis
ENSELUG00000014301	LSM6	100	96.250	ENSMNEG00000034820	-	100	96.250	Macaca_nemestrina
ENSELUG00000014301	LSM6	100	75.000	ENSMNEG00000040412	-	100	75.000	Macaca_nemestrina
ENSELUG00000014301	LSM6	100	96.250	ENSMLEG00000035153	LSM6	100	96.250	Mandrillus_leucophaeus
ENSELUG00000014301	LSM6	100	97.500	ENSMAMG00000014029	lsm6	100	97.500	Mastacembelus_armatus
ENSELUG00000014301	LSM6	100	97.500	ENSMZEG00005009146	lsm6	100	97.500	Maylandia_zebra
ENSELUG00000014301	LSM6	100	96.250	ENSMGAG00000003802	LSM6	100	96.250	Meleagris_gallopavo
ENSELUG00000014301	LSM6	100	96.250	ENSMAUG00000014938	Lsm6	100	96.250	Mesocricetus_auratus
ENSELUG00000014301	LSM6	98	88.462	ENSMICG00000047411	-	92	88.462	Microcebus_murinus
ENSELUG00000014301	LSM6	100	96.250	ENSMICG00000042599	LSM6	100	96.250	Microcebus_murinus
ENSELUG00000014301	LSM6	100	96.250	ENSMOCG00000020049	Lsm6	100	96.250	Microtus_ochrogaster
ENSELUG00000014301	LSM6	100	91.250	ENSMMOG00000007379	-	100	91.250	Mola_mola
ENSELUG00000014301	LSM6	100	97.500	ENSMMOG00000005470	lsm6	100	97.500	Mola_mola
ENSELUG00000014301	LSM6	100	96.250	ENSMODG00000000526	LSM6	100	96.250	Monodelphis_domestica
ENSELUG00000014301	LSM6	100	97.500	ENSMALG00000002419	lsm6	100	97.500	Monopterus_albus
ENSELUG00000014301	LSM6	100	96.250	MGP_CAROLIEiJ_G0031245	Lsm6	100	96.250	Mus_caroli
ENSELUG00000014301	LSM6	100	96.250	ENSMUSG00000031683	Lsm6	100	96.250	Mus_musculus
ENSELUG00000014301	LSM6	100	96.250	MGP_PahariEiJ_G0022851	Lsm6	100	96.250	Mus_pahari
ENSELUG00000014301	LSM6	100	96.250	MGP_SPRETEiJ_G0032365	Lsm6	100	96.250	Mus_spretus
ENSELUG00000014301	LSM6	99	96.203	ENSMPUG00000006936	LSM6	92	96.203	Mustela_putorius_furo
ENSELUG00000014301	LSM6	100	96.250	ENSMLUG00000026355	LSM6	100	96.250	Myotis_lucifugus
ENSELUG00000014301	LSM6	100	96.250	ENSNGAG00000019116	Lsm6	100	96.250	Nannospalax_galili
ENSELUG00000014301	LSM6	100	97.500	ENSNBRG00000004887	lsm6	100	97.500	Neolamprologus_brichardi
ENSELUG00000014301	LSM6	100	96.250	ENSNLEG00000005584	LSM6	100	96.250	Nomascus_leucogenys
ENSELUG00000014301	LSM6	100	95.000	ENSOPRG00000011199	LSM6	100	95.000	Ochotona_princeps
ENSELUG00000014301	LSM6	100	95.000	ENSODEG00000019419	-	100	95.000	Octodon_degus
ENSELUG00000014301	LSM6	100	95.000	ENSODEG00000002307	-	100	95.000	Octodon_degus
ENSELUG00000014301	LSM6	96	85.714	ENSODEG00000018684	-	100	85.714	Octodon_degus
ENSELUG00000014301	LSM6	100	93.750	ENSODEG00000020420	-	100	93.750	Octodon_degus
ENSELUG00000014301	LSM6	100	97.500	ENSONIG00000010005	lsm6	100	97.500	Oreochromis_niloticus
ENSELUG00000014301	LSM6	98	70.513	ENSOANG00000006894	-	100	70.513	Ornithorhynchus_anatinus
ENSELUG00000014301	LSM6	98	70.513	ENSOANG00000006895	-	100	70.513	Ornithorhynchus_anatinus
ENSELUG00000014301	LSM6	100	96.250	ENSORLG00000024158	lsm6	100	96.250	Oryzias_latipes
ENSELUG00000014301	LSM6	100	96.250	ENSORLG00020017383	lsm6	100	96.250	Oryzias_latipes_hni
ENSELUG00000014301	LSM6	100	96.250	ENSORLG00015016903	lsm6	100	96.250	Oryzias_latipes_hsok
ENSELUG00000014301	LSM6	100	97.500	ENSOMEG00000000074	lsm6	100	97.500	Oryzias_melastigma
ENSELUG00000014301	LSM6	100	96.250	ENSOGAG00000026665	-	100	96.250	Otolemur_garnettii
ENSELUG00000014301	LSM6	100	96.250	ENSOGAG00000033153	-	100	96.250	Otolemur_garnettii
ENSELUG00000014301	LSM6	86	97.101	ENSOARG00000008509	-	88	97.101	Ovis_aries
ENSELUG00000014301	LSM6	99	89.873	ENSOARG00000011641	-	92	89.873	Ovis_aries
ENSELUG00000014301	LSM6	100	96.250	ENSPPAG00000037929	LSM6	100	96.250	Pan_paniscus
ENSELUG00000014301	LSM6	100	96.250	ENSPPRG00000012806	LSM6	100	96.250	Panthera_pardus
ENSELUG00000014301	LSM6	100	96.250	ENSPTIG00000019769	LSM6	100	96.250	Panthera_tigris_altaica
ENSELUG00000014301	LSM6	100	96.250	ENSPTRG00000016488	LSM6	100	96.250	Pan_troglodytes
ENSELUG00000014301	LSM6	100	96.250	ENSPANG00000006552	LSM6	100	96.250	Papio_anubis
ENSELUG00000014301	LSM6	100	100.000	ENSPKIG00000016176	lsm6	100	100.000	Paramormyrops_kingsleyae
ENSELUG00000014301	LSM6	100	96.250	ENSPSIG00000016942	LSM6	100	96.250	Pelodiscus_sinensis
ENSELUG00000014301	LSM6	100	97.500	ENSPMGG00000018004	lsm6	100	97.500	Periophthalmus_magnuspinnatus
ENSELUG00000014301	LSM6	100	96.250	ENSPEMG00000012410	Lsm6	100	96.250	Peromyscus_maniculatus_bairdii
ENSELUG00000014301	LSM6	100	95.000	ENSPMAG00000006949	lsm6	100	95.000	Petromyzon_marinus
ENSELUG00000014301	LSM6	100	96.250	ENSPCIG00000023469	LSM6	80	97.101	Phascolarctos_cinereus
ENSELUG00000014301	LSM6	100	97.500	ENSPFOG00000008881	lsm6	100	97.500	Poecilia_formosa
ENSELUG00000014301	LSM6	100	97.500	ENSPLAG00000003202	lsm6	100	97.500	Poecilia_latipinna
ENSELUG00000014301	LSM6	100	97.500	ENSPMEG00000004000	lsm6	100	97.500	Poecilia_mexicana
ENSELUG00000014301	LSM6	100	97.500	ENSPREG00000023235	lsm6	100	97.500	Poecilia_reticulata
ENSELUG00000014301	LSM6	100	96.250	ENSPPYG00000015105	LSM6	100	96.250	Pongo_abelii
ENSELUG00000014301	LSM6	100	96.250	ENSPCOG00000013899	LSM6	100	96.250	Propithecus_coquereli
ENSELUG00000014301	LSM6	100	97.500	ENSPNYG00000012614	lsm6	100	97.500	Pundamilia_nyererei
ENSELUG00000014301	LSM6	100	100.000	ENSPNAG00000018779	lsm6	100	100.000	Pygocentrus_nattereri
ENSELUG00000014301	LSM6	100	96.250	ENSRNOG00000030374	Lsm6	100	96.250	Rattus_norvegicus
ENSELUG00000014301	LSM6	100	96.250	ENSRNOG00000049370	LOC100360750	100	96.250	Rattus_norvegicus
ENSELUG00000014301	LSM6	100	96.250	ENSRBIG00000027878	LSM6	100	96.250	Rhinopithecus_bieti
ENSELUG00000014301	LSM6	100	96.250	ENSRROG00000024868	LSM6	100	96.250	Rhinopithecus_roxellana
ENSELUG00000014301	LSM6	95	41.250	YDR378C	-	97	44.578	Saccharomyces_cerevisiae
ENSELUG00000014301	LSM6	100	96.250	ENSSBOG00000021229	-	100	96.250	Saimiri_boliviensis_boliviensis
ENSELUG00000014301	LSM6	100	70.000	ENSSBOG00000028103	-	100	70.000	Saimiri_boliviensis_boliviensis
ENSELUG00000014301	LSM6	100	100.000	ENSSFOG00015016480	lsm6	100	100.000	Scleropages_formosus
ENSELUG00000014301	LSM6	100	97.500	ENSSMAG00000004550	lsm6	100	97.500	Scophthalmus_maximus
ENSELUG00000014301	LSM6	100	97.500	ENSSDUG00000020459	lsm6	50	97.500	Seriola_dumerili
ENSELUG00000014301	LSM6	86	98.551	ENSSLDG00000004136	-	59	98.551	Seriola_lalandi_dorsalis
ENSELUG00000014301	LSM6	100	97.500	ENSSLDG00000020533	lsm6	83	97.500	Seriola_lalandi_dorsalis
ENSELUG00000014301	LSM6	60	93.750	ENSSARG00000000689	LSM6	100	93.750	Sorex_araneus
ENSELUG00000014301	LSM6	100	96.250	ENSSPUG00000008657	LSM6	100	96.250	Sphenodon_punctatus
ENSELUG00000014301	LSM6	100	97.500	ENSSPAG00000003246	lsm6	100	97.500	Stegastes_partitus
ENSELUG00000014301	LSM6	100	96.250	ENSSSCG00000035973	LSM6	100	96.250	Sus_scrofa
ENSELUG00000014301	LSM6	100	96.250	ENSTGUG00000002663	LSM6	100	96.250	Taeniopygia_guttata
ENSELUG00000014301	LSM6	100	97.500	ENSTRUG00000023398	lsm6	100	97.500	Takifugu_rubripes
ENSELUG00000014301	LSM6	100	97.500	ENSTNIG00000017725	lsm6	100	97.500	Tetraodon_nigroviridis
ENSELUG00000014301	LSM6	100	96.250	ENSTTRG00000004609	LSM6	100	96.250	Tursiops_truncatus
ENSELUG00000014301	LSM6	98	88.462	ENSUAMG00000014213	LSM6	64	88.462	Ursus_americanus
ENSELUG00000014301	LSM6	98	88.462	ENSUMAG00000015727	LSM6	64	88.462	Ursus_maritimus
ENSELUG00000014301	LSM6	100	96.250	ENSVPAG00000006922	LSM6	100	96.250	Vicugna_pacos
ENSELUG00000014301	LSM6	100	96.250	ENSVVUG00000009254	LSM6	68	96.250	Vulpes_vulpes
ENSELUG00000014301	LSM6	100	96.250	ENSXETG00000023683	lsm6	100	96.250	Xenopus_tropicalis
ENSELUG00000014301	LSM6	100	97.500	ENSXMAG00000009606	lsm6	100	97.500	Xiphophorus_maculatus