EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000014375 (Gene tree)
Gene ID: 105022056
Gene Symbol: pan3
Alias: zgc:171628
Full Name: poly(A) specific ribonuclease subunit PAN3
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 18167 bases
Position: chrLG21:17534598-17552764
Accession: 105022056
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000014200	zf-CCCH	PF00642.24	6.5e-05	1	1
ENSELUP00000035343	zf-CCCH	PF00642.24	0.00037	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000022963	-	2376	XM_013139650	ENSELUP00000035343	791 (aa)	XP_012995104	-
ENSELUT00000022926	-	663	-	ENSELUP00000014200	220 (aa)	-	-
ENSELUT00000022939	-	1944	-	ENSELUP00000035329	647 (aa)	-	-

Gene Model

Click here to download ENSELUG00000014375's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000014375's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000014375	pan3	95	76.818	ENSDARG00000031637	pan3	99	76.818	Danio_rerio
ENSELUG00000014375	pan3	99	83.147	ENSKMAG00000008813	pan3	99	83.147	Kryptolebias_marmoratus
ENSELUG00000014375	pan3	99	66.512	ENSLACG00000017156	PAN3	99	67.940	Latimeria_chalumnae
ENSELUG00000014375	pan3	99	82.080	ENSORLG00000008758	pan3	99	82.080	Oryzias_latipes
ENSELUG00000014375	pan3	99	78.321	ENSORLG00015014393	pan3	99	78.321	Oryzias_latipes_hsok
ENSELUG00000014375	pan3	99	77.068	ENSOMEG00000007798	pan3	99	77.068	Oryzias_melastigma
ENSELUG00000014375	pan3	90	64.179	ENSPKIG00000008329	-	96	69.983	Paramormyrops_kingsleyae
ENSELUG00000014375	pan3	90	65.049	ENSPKIG00000018576	pan3	73	65.842	Paramormyrops_kingsleyae
ENSELUG00000014375	pan3	97	61.742	ENSPMAG00000002383	pan3	99	61.917	Petromyzon_marinus
ENSELUG00000014375	pan3	99	81.648	ENSPREG00000019582	pan3	99	81.250	Poecilia_reticulata
ENSELUG00000014375	pan3	99	85.518	ENSSMAG00000014517	pan3	98	85.518	Scophthalmus_maximus
ENSELUG00000014375	pan3	97	73.791	ENSXETG00000011794	pan3	99	72.840	Xenopus_tropicalis