EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000014413 (Gene tree)
Gene ID: -
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain-containing protein 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 16197 bases
Position: chrLG22:9461368-9477564
Accession: 105022555
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000035422	R3H	PF01424.22	8.4e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000038881	-	3054	XM_010891085	ENSELUP00000035422	1017 (aa)	XP_010889387	-

Gene Model

Click here to download ENSELUG00000014413's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000014413's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000014413	r3hdm1	96	54.625	ENSELUG00000004909	R3HDM1	99	53.364

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000014413	r3hdm1	87	78.339	ENSG00000048991	R3HDM1	80	84.746	Homo_sapiens
ENSELUG00000014413	r3hdm1	84	51.670	ENSAPOG00000020850	r3hdm1	89	50.625	Acanthochromis_polyacanthus
ENSELUG00000014413	r3hdm1	100	51.888	ENSAMEG00000014886	R3HDM1	93	50.765	Ailuropoda_melanoleuca
ENSELUG00000014413	r3hdm1	83	51.163	ENSAOCG00000005192	r3hdm1	87	48.626	Amphiprion_ocellaris
ENSELUG00000014413	r3hdm1	83	53.363	ENSAPEG00000016108	r3hdm1	90	52.915	Amphiprion_percula
ENSELUG00000014413	r3hdm1	83	53.274	ENSATEG00000000232	r3hdm1	90	52.818	Anabas_testudineus
ENSELUG00000014413	r3hdm1	100	53.973	ENSAPLG00000015231	R3HDM1	93	52.368	Anas_platyrhynchos
ENSELUG00000014413	r3hdm1	96	51.859	ENSACAG00000001676	R3HDM1	88	51.256	Anolis_carolinensis
ENSELUG00000014413	r3hdm1	100	52.385	ENSANAG00000035334	R3HDM1	92	52.722	Aotus_nancymaae
ENSELUG00000014413	r3hdm1	83	54.084	ENSACLG00000027282	r3hdm1	90	54.051	Astatotilapia_calliptera
ENSELUG00000014413	r3hdm1	92	70.000	ENSAMXG00000012861	R3HDM1	92	73.860	Astyanax_mexicanus
ENSELUG00000014413	r3hdm1	87	83.824	ENSAMXG00000003536	r3hdm1	89	57.156	Astyanax_mexicanus
ENSELUG00000014413	r3hdm1	100	50.219	ENSBTAG00000013302	R3HDM1	91	51.111	Bos_taurus
ENSELUG00000014413	r3hdm1	87	78.339	ENSCJAG00000011718	R3HDM1	92	52.632	Callithrix_jacchus
ENSELUG00000014413	r3hdm1	100	51.752	ENSCAFG00000005075	R3HDM1	93	50.628	Canis_familiaris
ENSELUG00000014413	r3hdm1	100	51.752	ENSCAFG00020016119	R3HDM1	93	50.628	Canis_lupus_dingo
ENSELUG00000014413	r3hdm1	100	50.940	ENSCHIG00000020851	R3HDM1	93	50.453	Capra_hircus
ENSELUG00000014413	r3hdm1	100	50.264	ENSCPOG00000012784	R3HDM1	76	72.897	Cavia_porcellus
ENSELUG00000014413	r3hdm1	87	78.339	ENSCCAG00000027199	R3HDM1	92	52.772	Cebus_capucinus
ENSELUG00000014413	r3hdm1	96	53.773	ENSCATG00000023642	R3HDM1	92	53.200	Cercocebus_atys
ENSELUG00000014413	r3hdm1	100	50.218	ENSCLAG00000007962	R3HDM1	77	69.196	Chinchilla_lanigera
ENSELUG00000014413	r3hdm1	96	52.359	ENSCSAG00000016356	R3HDM1	93	50.307	Chlorocebus_sabaeus
ENSELUG00000014413	r3hdm1	75	73.913	ENSCHOG00000013638	R3HDM1	67	73.913	Choloepus_hoffmanni
ENSELUG00000014413	r3hdm1	96	55.631	ENSCPBG00000009645	R3HDM1	99	77.239	Chrysemys_picta_bellii
ENSELUG00000014413	r3hdm1	96	54.111	ENSCANG00000034748	R3HDM1	93	51.039	Colobus_angolensis_palliatus
ENSELUG00000014413	r3hdm1	99	50.657	ENSCGRG00001012357	R3hdm1	90	49.211	Cricetulus_griseus_chok1gshd
ENSELUG00000014413	r3hdm1	99	52.076	ENSCGRG00000012080	R3hdm1	77	69.196	Cricetulus_griseus_crigri
ENSELUG00000014413	r3hdm1	83	53.073	ENSCVAG00000007582	r3hdm1	91	50.160	Cyprinodon_variegatus
ENSELUG00000014413	r3hdm1	100	51.167	ENSDNOG00000000771	R3HDM1	93	49.955	Dasypus_novemcinctus
ENSELUG00000014413	r3hdm1	92	53.454	ENSETEG00000013606	R3HDM1	84	52.110	Echinops_telfairi
ENSELUG00000014413	r3hdm1	90	68.529	ENSEASG00005007392	R3HDM1	93	50.991	Equus_asinus_asinus
ENSELUG00000014413	r3hdm1	100	51.935	ENSECAG00000019114	R3HDM1	93	50.809	Equus_caballus
ENSELUG00000014413	r3hdm1	76	65.957	ENSEEUG00000012589	R3HDM1	59	65.426	Erinaceus_europaeus
ENSELUG00000014413	r3hdm1	100	51.161	ENSFCAG00000027113	R3HDM1	92	52.249	Felis_catus
ENSELUG00000014413	r3hdm1	91	47.882	ENSFALG00000013731	R3HDM1	87	46.654	Ficedula_albicollis
ENSELUG00000014413	r3hdm1	100	50.261	ENSFDAG00000016478	R3HDM1	77	69.643	Fukomys_damarensis
ENSELUG00000014413	r3hdm1	83	50.266	ENSFHEG00000018713	r3hdm1	87	48.723	Fundulus_heteroclitus
ENSELUG00000014413	r3hdm1	86	75.385	ENSGALG00000012246	R3HDM1	95	75.385	Gallus_gallus
ENSELUG00000014413	r3hdm1	83	52.556	ENSGAFG00000006203	r3hdm1	90	51.559	Gambusia_affinis
ENSELUG00000014413	r3hdm1	87	49.501	ENSGACG00000014925	r3hdm1	93	50.152	Gasterosteus_aculeatus
ENSELUG00000014413	r3hdm1	100	53.535	ENSGAGG00000007840	R3HDM1	89	65.964	Gopherus_agassizii
ENSELUG00000014413	r3hdm1	87	78.339	ENSGGOG00000008156	R3HDM1	93	51.212	Gorilla_gorilla
ENSELUG00000014413	r3hdm1	100	50.874	ENSHGLG00000015718	R3HDM1	77	69.196	Heterocephalus_glaber_female
ENSELUG00000014413	r3hdm1	95	43.829	ENSHGLG00100015374	-	92	43.012	Heterocephalus_glaber_male
ENSELUG00000014413	r3hdm1	100	50.699	ENSHGLG00100003184	-	77	69.196	Heterocephalus_glaber_male
ENSELUG00000014413	r3hdm1	83	48.405	ENSHCOG00000013366	r3hdm1	81	66.076	Hippocampus_comes
ENSELUG00000014413	r3hdm1	85	57.080	ENSIPUG00000001676	R3HDM1	96	54.289	Ictalurus_punctatus
ENSELUG00000014413	r3hdm1	83	77.941	ENSIPUG00000013629	r3hdm1	88	56.504	Ictalurus_punctatus
ENSELUG00000014413	r3hdm1	100	52.115	ENSSTOG00000007572	R3HDM1	77	69.196	Ictidomys_tridecemlineatus
ENSELUG00000014413	r3hdm1	87	77.256	ENSLACG00000005334	R3HDM1	91	54.264	Latimeria_chalumnae
ENSELUG00000014413	r3hdm1	100	57.587	ENSLOCG00000001641	r3hdm1	93	56.908	Lepisosteus_oculatus
ENSELUG00000014413	r3hdm1	89	68.976	ENSLAFG00000009065	R3HDM1	93	49.563	Loxodonta_africana
ENSELUG00000014413	r3hdm1	96	53.964	ENSMFAG00000030331	R3HDM1	92	53.391	Macaca_fascicularis
ENSELUG00000014413	r3hdm1	96	53.868	ENSMMUG00000009844	R3HDM1	92	53.295	Macaca_mulatta
ENSELUG00000014413	r3hdm1	96	53.773	ENSMNEG00000027793	R3HDM1	92	53.295	Macaca_nemestrina
ENSELUG00000014413	r3hdm1	96	53.964	ENSMLEG00000043189	R3HDM1	92	53.391	Mandrillus_leucophaeus
ENSELUG00000014413	r3hdm1	86	52.223	ENSMAMG00000004532	r3hdm1	93	51.449	Mastacembelus_armatus
ENSELUG00000014413	r3hdm1	83	54.084	ENSMZEG00005003157	r3hdm1	87	54.051	Maylandia_zebra
ENSELUG00000014413	r3hdm1	100	53.321	ENSMGAG00000012461	R3HDM1	93	51.718	Meleagris_gallopavo
ENSELUG00000014413	r3hdm1	100	50.958	ENSMAUG00000010315	R3hdm1	77	69.196	Mesocricetus_auratus
ENSELUG00000014413	r3hdm1	79	77.978	ENSMICG00000042655	-	88	79.478	Microcebus_murinus
ENSELUG00000014413	r3hdm1	87	78.339	ENSMICG00000005900	-	90	79.851	Microcebus_murinus
ENSELUG00000014413	r3hdm1	83	52.816	ENSMODG00000000923	R3HDM1	82	48.763	Monodelphis_domestica
ENSELUG00000014413	r3hdm1	96	49.567	ENSMALG00000009000	r3hdm1	88	48.750	Monopterus_albus
ENSELUG00000014413	r3hdm1	100	50.880	MGP_CAROLIEiJ_G0014543	R3hdm1	77	69.196	Mus_caroli
ENSELUG00000014413	r3hdm1	100	50.968	ENSMUSG00000056211	R3hdm1	77	69.196	Mus_musculus
ENSELUG00000014413	r3hdm1	96	52.470	MGP_PahariEiJ_G0027779	R3hdm1	77	69.683	Mus_pahari
ENSELUG00000014413	r3hdm1	100	50.880	MGP_SPRETEiJ_G0015350	R3hdm1	77	69.196	Mus_spretus
ENSELUG00000014413	r3hdm1	100	51.982	ENSMPUG00000002412	R3HDM1	93	50.901	Mustela_putorius_furo
ENSELUG00000014413	r3hdm1	100	51.613	ENSMLUG00000013824	R3HDM1	93	50.268	Myotis_lucifugus
ENSELUG00000014413	r3hdm1	87	78.339	ENSNLEG00000008622	R3HDM1	92	52.581	Nomascus_leucogenys
ENSELUG00000014413	r3hdm1	80	48.741	ENSMEUG00000011784	R3HDM1	76	52.996	Notamacropus_eugenii
ENSELUG00000014413	r3hdm1	100	50.088	ENSODEG00000008607	R3HDM1	77	69.643	Octodon_degus
ENSELUG00000014413	r3hdm1	96	51.187	ENSONIG00000012017	r3hdm1	91	50.047	Oreochromis_niloticus
ENSELUG00000014413	r3hdm1	100	50.180	ENSOANG00000007987	R3HDM1	93	51.671	Ornithorhynchus_anatinus
ENSELUG00000014413	r3hdm1	87	52.000	ENSOCUG00000017366	R3HDM1	90	50.564	Oryctolagus_cuniculus
ENSELUG00000014413	r3hdm1	83	51.877	ENSORLG00000004297	r3hdm1	94	47.035	Oryzias_latipes
ENSELUG00000014413	r3hdm1	86	50.266	ENSORLG00015017355	r3hdm1	93	49.413	Oryzias_latipes_hsok
ENSELUG00000014413	r3hdm1	100	51.028	ENSOGAG00000003136	R3HDM1	93	50.540	Otolemur_garnettii
ENSELUG00000014413	r3hdm1	100	51.075	ENSOARG00000010788	R3HDM1	93	50.589	Ovis_aries
ENSELUG00000014413	r3hdm1	96	53.208	ENSPPAG00000027858	R3HDM1	92	51.936	Pan_paniscus
ENSELUG00000014413	r3hdm1	87	77.617	ENSPPRG00000002626	R3HDM1	92	52.249	Panthera_pardus
ENSELUG00000014413	r3hdm1	87	77.978	ENSPTIG00000016581	R3HDM1	92	52.249	Panthera_tigris_altaica
ENSELUG00000014413	r3hdm1	96	53.208	ENSPTRG00000012494	R3HDM1	92	51.936	Pan_troglodytes
ENSELUG00000014413	r3hdm1	96	53.964	ENSPANG00000026448	R3HDM1	92	53.391	Papio_anubis
ENSELUG00000014413	r3hdm1	86	83.588	ENSPKIG00000004328	r3hdm1	86	83.588	Paramormyrops_kingsleyae
ENSELUG00000014413	r3hdm1	100	52.656	ENSPSIG00000012915	R3HDM1	93	52.411	Pelodiscus_sinensis
ENSELUG00000014413	r3hdm1	96	52.315	ENSPEMG00000015187	R3hdm1	77	67.662	Peromyscus_maniculatus_bairdii
ENSELUG00000014413	r3hdm1	100	52.665	ENSPCIG00000002491	R3HDM1	93	53.054	Phascolarctos_cinereus
ENSELUG00000014413	r3hdm1	83	50.212	ENSPFOG00000015036	r3hdm1	87	48.140	Poecilia_formosa
ENSELUG00000014413	r3hdm1	83	52.444	ENSPLAG00000018042	r3hdm1	90	51.279	Poecilia_latipinna
ENSELUG00000014413	r3hdm1	83	52.667	ENSPMEG00000023947	r3hdm1	90	51.390	Poecilia_mexicana
ENSELUG00000014413	r3hdm1	83	53.177	ENSPREG00000007902	r3hdm1	79	69.403	Poecilia_reticulata
ENSELUG00000014413	r3hdm1	96	51.887	ENSPPYG00000012815	R3HDM1	93	49.508	Pongo_abelii
ENSELUG00000014413	r3hdm1	80	80.526	ENSPCAG00000006208	R3HDM1	69	80.105	Procavia_capensis
ENSELUG00000014413	r3hdm1	88	75.593	ENSPCOG00000012698	R3HDM1	94	76.923	Propithecus_coquereli
ENSELUG00000014413	r3hdm1	86	59.109	ENSPVAG00000006098	R3HDM1	77	56.952	Pteropus_vampyrus
ENSELUG00000014413	r3hdm1	87	83.088	ENSPNAG00000013952	r3hdm1	61	85.441	Pygocentrus_nattereri
ENSELUG00000014413	r3hdm1	87	83.026	ENSPNAG00000005436	R3HDM1	95	83.462	Pygocentrus_nattereri
ENSELUG00000014413	r3hdm1	100	50.925	ENSRNOG00000004099	R3hdm1	93	48.864	Rattus_norvegicus
ENSELUG00000014413	r3hdm1	97	53.466	ENSRBIG00000033317	R3HDM1	99	52.385	Rhinopithecus_bieti
ENSELUG00000014413	r3hdm1	96	53.721	ENSRROG00000034534	R3HDM1	92	52.436	Rhinopithecus_roxellana
ENSELUG00000014413	r3hdm1	100	52.252	ENSSBOG00000020389	R3HDM1	92	52.581	Saimiri_boliviensis_boliviensis
ENSELUG00000014413	r3hdm1	100	52.589	ENSSHAG00000016999	R3HDM1	93	52.839	Sarcophilus_harrisii
ENSELUG00000014413	r3hdm1	100	53.825	ENSSFOG00015019851	-	84	66.667	Scleropages_formosus
ENSELUG00000014413	r3hdm1	89	75.460	ENSSFOG00015014134	r3hdm1	93	75.460	Scleropages_formosus
ENSELUG00000014413	r3hdm1	99	48.370	ENSSMAG00000001669	r3hdm1	94	47.779	Scophthalmus_maximus
ENSELUG00000014413	r3hdm1	83	51.908	ENSSDUG00000010749	r3hdm1	56	59.754	Seriola_dumerili
ENSELUG00000014413	r3hdm1	96	50.859	ENSSLDG00000004499	r3hdm1	88	50.142	Seriola_lalandi_dorsalis
ENSELUG00000014413	r3hdm1	59	55.804	ENSSARG00000000352	-	56	55.804	Sorex_araneus
ENSELUG00000014413	r3hdm1	100	53.973	ENSSPUG00000004167	R3HDM1	93	53.412	Sphenodon_punctatus
ENSELUG00000014413	r3hdm1	83	54.208	ENSSPAG00000004648	r3hdm1	90	53.603	Stegastes_partitus
ENSELUG00000014413	r3hdm1	87	75.465	ENSSSCG00000015692	R3HDM1	94	51.351	Sus_scrofa
ENSELUG00000014413	r3hdm1	100	51.934	ENSTGUG00000011750	R3HDM1	93	50.781	Taeniopygia_guttata
ENSELUG00000014413	r3hdm1	83	51.214	ENSTRUG00000011654	r3hdm1	89	50.552	Takifugu_rubripes
ENSELUG00000014413	r3hdm1	83	49.329	ENSTNIG00000010362	r3hdm1	87	48.326	Tetraodon_nigroviridis
ENSELUG00000014413	r3hdm1	96	52.019	ENSTTRG00000003935	R3HDM1	87	50.527	Tursiops_truncatus
ENSELUG00000014413	r3hdm1	51	79.478	ENSUAMG00000024806	R3HDM1	79	61.853	Ursus_americanus
ENSELUG00000014413	r3hdm1	87	77.978	ENSUMAG00000005552	R3HDM1	91	51.576	Ursus_maritimus
ENSELUG00000014413	r3hdm1	96	50.911	ENSVPAG00000007333	R3HDM1	87	50.096	Vicugna_pacos
ENSELUG00000014413	r3hdm1	100	50.350	ENSVVUG00000006457	R3HDM1	91	52.145	Vulpes_vulpes
ENSELUG00000014413	r3hdm1	83	53.238	ENSXETG00000019330	r3hdm1	92	50.886	Xenopus_tropicalis
ENSELUG00000014413	r3hdm1	66	54.062	ENSXCOG00000017448	r3hdm1	86	53.997	Xiphophorus_couchianus
ENSELUG00000014413	r3hdm1	83	52.009	ENSXMAG00000007885	r3hdm1	88	51.732	Xiphophorus_maculatus