EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000014538 (Gene tree)
Gene ID: 105024589
Gene Symbol: dkc1
Alias: fc87a02|fi24a05|fv62a07|wu:fa28f10|wu:fc87a02|wu:fi24a05|wu:fv62a07|zgc:110395
Full Name: dyskerin pseudouridine synthase 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 5264 bases
Position: chrLG07:11093214-11098477
Accession: 105024589
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000014476	TruB_N	PF01509.18	2.6e-21	1	1
ENSELUP00000035518	TruB_N	PF01509.18	1.6e-20	1	1
ENSELUP00000035518	PUA	PF01472.20	1.9e-16	1	1
ENSELUP00000014476	PUA	PF01472.20	3.2e-16	1	1
ENSELUP00000014476	DKCLD	PF08068.12	7e-31	1	1
ENSELUP00000035518	DKCLD	PF08068.12	7.1e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000023313	-	1524	XM_010894619	ENSELUP00000035518	507 (aa)	XP_010892921	UPI000577E742
ENSELUT00000023309	-	1488	-	ENSELUP00000014476	495 (aa)	-	-

Gene Model

Click here to download ENSELUG00000014538's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000014538's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000014538	dkc1	90	79.955	ENSG00000130826	DKC1	99	87.864	Homo_sapiens
ENSELUG00000014538	dkc1	86	90.411	ENSAPOG00000007799	dkc1	88	89.254	Acanthochromis_polyacanthus
ENSELUG00000014538	dkc1	90	79.778	ENSAMEG00000002776	DKC1	90	79.476	Ailuropoda_melanoleuca
ENSELUG00000014538	dkc1	85	91.190	ENSACIG00000022614	dkc1	91	88.838	Amphilophus_citrinellus
ENSELUG00000014538	dkc1	90	88.377	ENSAOCG00000013159	dkc1	87	88.915	Amphiprion_ocellaris
ENSELUG00000014538	dkc1	90	88.377	ENSAPEG00000002284	dkc1	87	90.233	Amphiprion_percula
ENSELUG00000014538	dkc1	86	86.067	ENSATEG00000013682	dkc1	87	85.874	Anabas_testudineus
ENSELUG00000014538	dkc1	86	82.143	ENSACAG00000015600	DKC1	77	82.143	Anolis_carolinensis
ENSELUG00000014538	dkc1	88	81.567	ENSANAG00000022732	DKC1	85	82.045	Aotus_nancymaae
ENSELUG00000014538	dkc1	94	82.365	ENSACLG00000015605	dkc1	81	92.750	Astatotilapia_calliptera
ENSELUG00000014538	dkc1	90	88.671	ENSAMXG00000017108	dkc1	89	87.885	Astyanax_mexicanus
ENSELUG00000014538	dkc1	90	79.642	ENSBTAG00000013045	DKC1	86	80.726	Bos_taurus
ENSELUG00000014538	dkc1	81	64.268	WBGene00010478	K01G5.5	97	61.021	Caenorhabditis_elegans
ENSELUG00000014538	dkc1	88	80.876	ENSCJAG00000004210	DKC1	86	80.995	Callithrix_jacchus
ENSELUG00000014538	dkc1	88	79.730	ENSCAFG00000019620	-	88	77.753	Canis_familiaris
ENSELUG00000014538	dkc1	87	71.759	ENSCAFG00000009311	-	84	72.897	Canis_familiaris
ENSELUG00000014538	dkc1	87	71.528	ENSCAFG00020009379	-	75	75.758	Canis_lupus_dingo
ENSELUG00000014538	dkc1	88	79.730	ENSCAFG00020008918	-	88	77.753	Canis_lupus_dingo
ENSELUG00000014538	dkc1	90	79.821	ENSCHIG00000017392	DKC1	87	80.674	Capra_hircus
ENSELUG00000014538	dkc1	91	78.525	ENSTSYG00000007681	DKC1	95	75.197	Carlito_syrichta
ENSELUG00000014538	dkc1	83	80.488	ENSCAPG00000003342	DKC1	84	87.772	Cavia_aperea
ENSELUG00000014538	dkc1	90	79.955	ENSCPOG00000008825	DKC1	91	78.326	Cavia_porcellus
ENSELUG00000014538	dkc1	88	71.429	ENSCCAG00000027418	DKC1	84	71.591	Cebus_capucinus
ENSELUG00000014538	dkc1	90	79.279	ENSCATG00000033602	DKC1	88	78.462	Cercocebus_atys
ENSELUG00000014538	dkc1	89	80.090	ENSCLAG00000000720	DKC1	88	80.180	Chinchilla_lanigera
ENSELUG00000014538	dkc1	90	79.505	ENSCSAG00000006706	DKC1	88	78.462	Chlorocebus_sabaeus
ENSELUG00000014538	dkc1	87	80.537	ENSCPBG00000005858	DKC1	87	86.207	Chrysemys_picta_bellii
ENSELUG00000014538	dkc1	79	82.353	ENSCING00000004599	-	82	76.782	Ciona_intestinalis
ENSELUG00000014538	dkc1	80	81.266	ENSCSAVG00000010047	-	94	77.619	Ciona_savignyi
ENSELUG00000014538	dkc1	90	79.505	ENSCANG00000027987	DKC1	88	78.462	Colobus_angolensis_palliatus
ENSELUG00000014538	dkc1	76	66.138	ENSCGRG00001016789	-	83	65.285	Cricetulus_griseus_chok1gshd
ENSELUG00000014538	dkc1	88	80.594	ENSCGRG00001014574	-	90	79.050	Cricetulus_griseus_chok1gshd
ENSELUG00000014538	dkc1	88	80.594	ENSCGRG00000016075	-	90	79.050	Cricetulus_griseus_crigri
ENSELUG00000014538	dkc1	76	66.138	ENSCGRG00000014809	-	81	65.285	Cricetulus_griseus_crigri
ENSELUG00000014538	dkc1	94	81.933	ENSCSEG00000012633	dkc1	90	87.943	Cynoglossus_semilaevis
ENSELUG00000014538	dkc1	86	88.584	ENSCVAG00000010155	dkc1	87	87.973	Cyprinodon_variegatus
ENSELUG00000014538	dkc1	82	92.548	ENSDARG00000016484	dkc1	90	88.403	Danio_rerio
ENSELUG00000014538	dkc1	88	81.193	ENSDNOG00000004218	DKC1	88	79.295	Dasypus_novemcinctus
ENSELUG00000014538	dkc1	56	72.760	ENSDORG00000013566	-	100	70.667	Dipodomys_ordii
ENSELUG00000014538	dkc1	91	68.151	FBgn0259937	Nop60B	98	67.568	Drosophila_melanogaster
ENSELUG00000014538	dkc1	80	85.354	ENSETEG00000016095	DKC1	80	85.354	Echinops_telfairi
ENSELUG00000014538	dkc1	67	77.946	ENSEBUG00000015962	dkc1	99	80.887	Eptatretus_burgeri
ENSELUG00000014538	dkc1	89	79.775	ENSEASG00005007484	DKC1	81	83.412	Equus_asinus_asinus
ENSELUG00000014538	dkc1	89	79.775	ENSECAG00000023524	DKC1	81	83.412	Equus_caballus
ENSELUG00000014538	dkc1	85	81.280	ENSEEUG00000003323	DKC1	97	82.367	Erinaceus_europaeus
ENSELUG00000014538	dkc1	80	85.930	ENSFCAG00000006577	DKC1	90	79.386	Felis_catus
ENSELUG00000014538	dkc1	93	80.514	ENSFALG00000011496	DKC1	90	80.171	Ficedula_albicollis
ENSELUG00000014538	dkc1	90	79.148	ENSFDAG00000002516	DKC1	87	81.549	Fukomys_damarensis
ENSELUG00000014538	dkc1	90	86.123	ENSFHEG00000004627	dkc1	90	85.746	Fundulus_heteroclitus
ENSELUG00000014538	dkc1	79	92.072	ENSGMOG00000017277	dkc1	100	92.072	Gadus_morhua
ENSELUG00000014538	dkc1	88	82.719	ENSGALG00000005054	DKC1	89	81.602	Gallus_gallus
ENSELUG00000014538	dkc1	90	87.090	ENSGAFG00000011486	dkc1	78	87.309	Gambusia_affinis
ENSELUG00000014538	dkc1	80	93.719	ENSGACG00000004373	dkc1	96	94.833	Gasterosteus_aculeatus
ENSELUG00000014538	dkc1	86	81.348	ENSGAGG00000011330	DKC1	84	82.688	Gopherus_agassizii
ENSELUG00000014538	dkc1	90	79.955	ENSGGOG00000001045	DKC1	88	78.681	Gorilla_gorilla
ENSELUG00000014538	dkc1	95	84.679	ENSHBUG00000012436	dkc1	90	87.333	Haplochromis_burtoni
ENSELUG00000014538	dkc1	94	75.051	ENSHGLG00000000649	DKC1	94	74.849	Heterocephalus_glaber_female
ENSELUG00000014538	dkc1	94	75.051	ENSHGLG00100001153	DKC1	95	74.849	Heterocephalus_glaber_male
ENSELUG00000014538	dkc1	84	88.785	ENSHCOG00000021099	dkc1	85	88.785	Hippocampus_comes
ENSELUG00000014538	dkc1	88	87.773	ENSIPUG00000010309	dkc1	88	87.555	Ictalurus_punctatus
ENSELUG00000014538	dkc1	90	68.653	ENSSTOG00000011904	-	82	69.663	Ictidomys_tridecemlineatus
ENSELUG00000014538	dkc1	85	73.953	ENSSTOG00000020149	-	85	74.134	Ictidomys_tridecemlineatus
ENSELUG00000014538	dkc1	90	78.924	ENSSTOG00000001074	-	91	79.955	Ictidomys_tridecemlineatus
ENSELUG00000014538	dkc1	56	72.924	ENSJJAG00000010086	-	92	72.924	Jaculus_jaculus
ENSELUG00000014538	dkc1	84	87.150	ENSKMAG00000008010	dkc1	90	85.523	Kryptolebias_marmoratus
ENSELUG00000014538	dkc1	85	90.972	ENSLBEG00000019122	dkc1	93	88.621	Labrus_bergylta
ENSELUG00000014538	dkc1	89	82.237	ENSLACG00000014025	DKC1	95	86.571	Latimeria_chalumnae
ENSELUG00000014538	dkc1	90	91.009	ENSLOCG00000013713	dkc1	88	92.235	Lepisosteus_oculatus
ENSELUG00000014538	dkc1	90	79.372	ENSLAFG00000000221	DKC1	90	79.654	Loxodonta_africana
ENSELUG00000014538	dkc1	90	79.505	ENSMFAG00000032398	DKC1	74	81.038	Macaca_fascicularis
ENSELUG00000014538	dkc1	90	79.505	ENSMMUG00000005768	DKC1	88	78.462	Macaca_mulatta
ENSELUG00000014538	dkc1	90	79.505	ENSMNEG00000034503	DKC1	88	78.462	Macaca_nemestrina
ENSELUG00000014538	dkc1	90	79.505	ENSMLEG00000034422	DKC1	88	78.462	Mandrillus_leucophaeus
ENSELUG00000014538	dkc1	82	93.812	ENSMAMG00000005427	dkc1	91	92.402	Mastacembelus_armatus
ENSELUG00000014538	dkc1	95	84.886	ENSMZEG00005014503	dkc1	90	87.556	Maylandia_zebra
ENSELUG00000014538	dkc1	76	85.859	ENSMGAG00000009238	DKC1	91	82.423	Meleagris_gallopavo
ENSELUG00000014538	dkc1	59	70.000	ENSMAUG00000016454	-	100	70.000	Mesocricetus_auratus
ENSELUG00000014538	dkc1	87	80.886	ENSMICG00000038751	-	83	82.143	Microcebus_murinus
ENSELUG00000014538	dkc1	83	71.845	ENSMICG00000002818	-	99	75.616	Microcebus_murinus
ENSELUG00000014538	dkc1	56	69.534	ENSMOCG00000001169	-	100	67.667	Microtus_ochrogaster
ENSELUG00000014538	dkc1	83	92.010	ENSMMOG00000020348	dkc1	90	92.010	Mola_mola
ENSELUG00000014538	dkc1	89	79.730	ENSMODG00000009243	DKC1	70	85.287	Monodelphis_domestica
ENSELUG00000014538	dkc1	86	88.073	ENSMALG00000009454	dkc1	88	86.283	Monopterus_albus
ENSELUG00000014538	dkc1	86	70.507	MGP_CAROLIEiJ_G0033191	Dkc1	85	82.400	Mus_caroli
ENSELUG00000014538	dkc1	88	80.734	ENSMUSG00000031403	Dkc1	100	70.667	Mus_musculus
ENSELUG00000014538	dkc1	88	80.275	MGP_PahariEiJ_G0031735	Dkc1	100	70.000	Mus_pahari
ENSELUG00000014538	dkc1	88	80.734	MGP_SPRETEiJ_G0034351	Dkc1	100	70.667	Mus_spretus
ENSELUG00000014538	dkc1	91	77.874	ENSMPUG00000016136	DKC1	79	81.967	Mustela_putorius_furo
ENSELUG00000014538	dkc1	90	75.615	ENSMLUG00000011918	DKC1	89	74.675	Myotis_lucifugus
ENSELUG00000014538	dkc1	59	70.903	ENSNGAG00000015724	-	100	70.903	Nannospalax_galili
ENSELUG00000014538	dkc1	80	93.216	ENSNBRG00000005638	dkc1	81	93.000	Neolamprologus_brichardi
ENSELUG00000014538	dkc1	90	80.180	ENSNLEG00000014323	DKC1	85	81.633	Nomascus_leucogenys
ENSELUG00000014538	dkc1	87	76.957	ENSMEUG00000001066	DKC1	96	77.149	Notamacropus_eugenii
ENSELUG00000014538	dkc1	70	79.885	ENSOPRG00000005248	DKC1	69	79.885	Ochotona_princeps
ENSELUG00000014538	dkc1	56	72.043	ENSODEG00000000549	-	100	70.000	Octodon_degus
ENSELUG00000014538	dkc1	83	84.915	ENSODEG00000011816	-	91	80.086	Octodon_degus
ENSELUG00000014538	dkc1	96	84.631	ENSONIG00000013889	dkc1	86	89.352	Oreochromis_niloticus
ENSELUG00000014538	dkc1	85	84.286	ENSOANG00000008713	-	91	81.348	Ornithorhynchus_anatinus
ENSELUG00000014538	dkc1	60	60.526	ENSOANG00000022295	-	87	60.577	Ornithorhynchus_anatinus
ENSELUG00000014538	dkc1	89	79.910	ENSOCUG00000012646	DKC1	88	78.901	Oryctolagus_cuniculus
ENSELUG00000014538	dkc1	84	88.000	ENSORLG00000018748	dkc1	84	87.588	Oryzias_latipes
ENSELUG00000014538	dkc1	89	85.366	ENSOMEG00000005786	dkc1	83	90.083	Oryzias_melastigma
ENSELUG00000014538	dkc1	89	80.269	ENSOGAG00000003399	DKC1	90	77.637	Otolemur_garnettii
ENSELUG00000014538	dkc1	90	79.821	ENSOARG00000003047	DKC1	87	80.899	Ovis_aries
ENSELUG00000014538	dkc1	87	81.818	ENSPPAG00000023820	DKC1	88	78.681	Pan_paniscus
ENSELUG00000014538	dkc1	91	78.619	ENSPPRG00000009104	DKC1	90	79.386	Panthera_pardus
ENSELUG00000014538	dkc1	84	81.882	ENSPTIG00000017469	DKC1	86	81.882	Panthera_tigris_altaica
ENSELUG00000014538	dkc1	90	79.596	ENSPTRG00000043416	-	74	81.264	Pan_troglodytes
ENSELUG00000014538	dkc1	90	79.955	ENSPTRG00000022449	DKC1	88	78.681	Pan_troglodytes
ENSELUG00000014538	dkc1	90	79.505	ENSPANG00000011978	DKC1	88	78.462	Papio_anubis
ENSELUG00000014538	dkc1	86	88.525	ENSPKIG00000008443	dkc1	99	82.729	Paramormyrops_kingsleyae
ENSELUG00000014538	dkc1	72	88.547	ENSPSIG00000013765	DKC1	86	88.547	Pelodiscus_sinensis
ENSELUG00000014538	dkc1	92	77.320	ENSPMGG00000004097	dkc1	73	87.750	Periophthalmus_magnuspinnatus
ENSELUG00000014538	dkc1	72	84.358	ENSPEMG00000013348	Dkc1	87	78.462	Peromyscus_maniculatus_bairdii
ENSELUG00000014538	dkc1	87	81.206	ENSPCIG00000016706	DKC1	68	85.891	Phascolarctos_cinereus
ENSELUG00000014538	dkc1	90	87.965	ENSPFOG00000018653	dkc1	90	87.965	Poecilia_formosa
ENSELUG00000014538	dkc1	90	87.965	ENSPLAG00000003272	dkc1	81	87.965	Poecilia_latipinna
ENSELUG00000014538	dkc1	90	87.965	ENSPMEG00000010413	dkc1	90	87.965	Poecilia_mexicana
ENSELUG00000014538	dkc1	90	87.965	ENSPREG00000004100	dkc1	86	87.330	Poecilia_reticulata
ENSELUG00000014538	dkc1	90	79.955	ENSPPYG00000020892	DKC1	89	78.681	Pongo_abelii
ENSELUG00000014538	dkc1	73	87.569	ENSPCAG00000015034	DKC1	73	86.133	Procavia_capensis
ENSELUG00000014538	dkc1	90	79.505	ENSPCOG00000026874	DKC1	88	78.366	Propithecus_coquereli
ENSELUG00000014538	dkc1	85	81.019	ENSPVAG00000009222	DKC1	86	82.009	Pteropus_vampyrus
ENSELUG00000014538	dkc1	84	85.941	ENSPNYG00000020063	dkc1	88	85.586	Pundamilia_nyererei
ENSELUG00000014538	dkc1	88	87.445	ENSPNAG00000005780	dkc1	87	87.445	Pygocentrus_nattereri
ENSELUG00000014538	dkc1	86	78.555	ENSRNOG00000055562	Dkc1	87	76.906	Rattus_norvegicus
ENSELUG00000014538	dkc1	90	79.505	ENSRBIG00000028457	DKC1	74	80.813	Rhinopithecus_bieti
ENSELUG00000014538	dkc1	90	79.505	ENSRROG00000044780	DKC1	88	78.462	Rhinopithecus_roxellana
ENSELUG00000014538	dkc1	80	70.455	YLR175W	-	85	69.175	Saccharomyces_cerevisiae
ENSELUG00000014538	dkc1	88	80.963	ENSSBOG00000033746	DKC1	88	78.462	Saimiri_boliviensis_boliviensis
ENSELUG00000014538	dkc1	89	79.499	ENSSHAG00000002463	DKC1	93	81.136	Sarcophilus_harrisii
ENSELUG00000014538	dkc1	89	88.478	ENSSFOG00015009585	dkc1	90	88.478	Scleropages_formosus
ENSELUG00000014538	dkc1	84	91.367	ENSSMAG00000002552	dkc1	84	91.367	Scophthalmus_maximus
ENSELUG00000014538	dkc1	93	86.200	ENSSDUG00000009963	dkc1	89	86.871	Seriola_dumerili
ENSELUG00000014538	dkc1	90	88.539	ENSSLDG00000019342	dkc1	90	88.787	Seriola_lalandi_dorsalis
ENSELUG00000014538	dkc1	90	75.501	ENSSARG00000001822	DKC1	87	76.484	Sorex_araneus
ENSELUG00000014538	dkc1	87	81.019	ENSSPUG00000018907	DKC1	88	79.654	Sphenodon_punctatus
ENSELUG00000014538	dkc1	93	84.342	ENSSPAG00000002585	dkc1	85	87.361	Stegastes_partitus
ENSELUG00000014538	dkc1	90	78.194	ENSSSCG00000012823	DKC1	90	80.093	Sus_scrofa
ENSELUG00000014538	dkc1	81	85.323	ENSTGUG00000006781	DKC1	91	83.902	Taeniopygia_guttata
ENSELUG00000014538	dkc1	91	86.147	ENSTRUG00000004413	dkc1	87	88.506	Takifugu_rubripes
ENSELUG00000014538	dkc1	99	66.538	ENSTNIG00000002582	dkc1	90	68.085	Tetraodon_nigroviridis
ENSELUG00000014538	dkc1	61	79.470	ENSTBEG00000011262	DKC1	89	75.309	Tupaia_belangeri
ENSELUG00000014538	dkc1	56	87.365	ENSTTRG00000008089	DKC1	55	87.365	Tursiops_truncatus
ENSELUG00000014538	dkc1	87	81.279	ENSUAMG00000022721	DKC1	90	82.864	Ursus_americanus
ENSELUG00000014538	dkc1	87	80.822	ENSUMAG00000016899	DKC1	96	85.242	Ursus_maritimus
ENSELUG00000014538	dkc1	80	70.960	ENSVVUG00000021671	-	74	70.647	Vulpes_vulpes
ENSELUG00000014538	dkc1	88	78.125	ENSVVUG00000020734	-	73	81.473	Vulpes_vulpes
ENSELUG00000014538	dkc1	94	80.503	ENSXETG00000032517	DKC1	85	86.118	Xenopus_tropicalis
ENSELUG00000014538	dkc1	86	86.818	ENSXCOG00000005498	dkc1	93	86.818	Xiphophorus_couchianus
ENSELUG00000014538	dkc1	90	86.652	ENSXMAG00000004919	dkc1	90	87.556	Xiphophorus_maculatus