EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000015062 (Gene tree)
Gene ID: 105006547
Gene Symbol: -
Alias: -
Full Name: polyadenylate-binding protein 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 8538 bases
Position: chrLG10:26448315-26456852
Accession: 105006547
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000015064	PABP	PF00658.18	6.3e-32	1	1
ENSELUP00000015064	RRM_5	PF13893.6	1.6e-07	1	1
ENSELUP00000015064	RRM_1	PF00076.22	4e-87	1	4
ENSELUP00000015064	RRM_1	PF00076.22	4e-87	2	4
ENSELUP00000015064	RRM_1	PF00076.22	4e-87	3	4
ENSELUP00000015064	RRM_1	PF00076.22	4e-87	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000024041	-	2921	XM_013135454	ENSELUP00000015064	636 (aa)	XP_012990908	UPI000661F162

Gene Model

Click here to download ENSELUG00000015062's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03013	RNA transport	KEGG
els03015	mRNA surveillance pathway	KEGG
els03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000015062's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000015062	-	59	30.508	ENSELUG00000006033	ncl	52	32.768
ENSELUG00000015062	-	57	30.108	ENSELUG00000005615	-	69	30.108
ENSELUG00000015062	-	99	89.623	ENSELUG00000003614	pabpc1a	100	89.623
ENSELUG00000015062	-	98	76.629	ENSELUG00000001811	pabpc1l	99	76.629
ENSELUG00000015062	-	58	31.788	ENSELUG00000008024	elavl1a	90	31.788
ENSELUG00000015062	-	59	36.145	ENSELUG00000008025	elavl4	80	36.145
ENSELUG00000015062	-	98	74.138	ENSELUG00000003195	pabpc4	97	74.608
ENSELUG00000015062	-	60	58.333	ENSELUG00000005389	-	100	58.333
ENSELUG00000015062	-	56	30.058	ENSELUG00000020089	-	67	30.058
ENSELUG00000015062	-	59	37.349	ENSELUG00000010026	ELAVL2	85	37.349
ENSELUG00000015062	-	63	56.928	ENSELUG00000005247	-	88	56.928
ENSELUG00000015062	-	59	37.349	ENSELUG00000023043	elavl3	92	37.349
ENSELUG00000015062	-	58	36.000	ENSELUG00000012561	rbm19	56	36.000
ENSELUG00000015062	-	54	38.554	ENSELUG00000018986	celf5a	70	36.559

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000015062	-	58	80.102	ENSG00000184388	PABPC1L2B	98	80.102	Homo_sapiens
ENSELUG00000015062	-	58	80.102	ENSG00000186288	PABPC1L2A	98	80.102	Homo_sapiens
ENSELUG00000015062	-	100	89.219	ENSAPOG00000015105	pabpc1a	100	89.219	Acanthochromis_polyacanthus
ENSELUG00000015062	-	100	92.308	ENSAPOG00000017776	pabpc1b	100	92.308	Acanthochromis_polyacanthus
ENSELUG00000015062	-	59	80.102	ENSAMEG00000019441	-	98	80.102	Ailuropoda_melanoleuca
ENSELUG00000015062	-	100	88.245	ENSACIG00000018366	pabpc1b	100	88.245	Amphilophus_citrinellus
ENSELUG00000015062	-	100	88.750	ENSACIG00000004685	pabpc1a	100	88.750	Amphilophus_citrinellus
ENSELUG00000015062	-	100	92.465	ENSAOCG00000019839	pabpc1b	100	92.465	Amphiprion_ocellaris
ENSELUG00000015062	-	100	88.750	ENSAOCG00000011656	pabpc1a	100	88.906	Amphiprion_ocellaris
ENSELUG00000015062	-	100	88.750	ENSAPEG00000006963	pabpc1a	100	88.906	Amphiprion_percula
ENSELUG00000015062	-	100	92.465	ENSAPEG00000010435	pabpc1b	100	92.465	Amphiprion_percula
ENSELUG00000015062	-	100	90.752	ENSATEG00000012917	pabpc1b	100	90.752	Anabas_testudineus
ENSELUG00000015062	-	100	88.125	ENSATEG00000024852	pabpc1a	100	88.438	Anabas_testudineus
ENSELUG00000015062	-	58	80.102	ENSANAG00000019429	-	98	80.102	Aotus_nancymaae
ENSELUG00000015062	-	58	80.102	ENSANAG00000019431	-	98	80.102	Aotus_nancymaae
ENSELUG00000015062	-	100	90.581	ENSACLG00000014335	pabpc1b	100	90.581	Astatotilapia_calliptera
ENSELUG00000015062	-	99	91.156	ENSACLG00000009399	pabpc1a	100	91.156	Astatotilapia_calliptera
ENSELUG00000015062	-	100	92.151	ENSAMXG00000008599	pabpc1b	100	92.308	Astyanax_mexicanus
ENSELUG00000015062	-	59	79.024	ENSBTAG00000050902	-	98	79.024	Bos_taurus
ENSELUG00000015062	-	60	77.033	ENSBTAG00000052491	-	98	77.033	Bos_taurus
ENSELUG00000015062	-	58	80.102	ENSCJAG00000041326	-	98	80.102	Callithrix_jacchus
ENSELUG00000015062	-	60	79.024	ENSCAFG00020002052	-	98	79.024	Canis_lupus_dingo
ENSELUG00000015062	-	58	80.102	ENSCHIG00000011138	-	98	80.102	Capra_hircus
ENSELUG00000015062	-	58	80.102	ENSCHIG00000006283	-	98	80.102	Capra_hircus
ENSELUG00000015062	-	58	80.102	ENSTSYG00000001775	-	98	80.102	Carlito_syrichta
ENSELUG00000015062	-	58	80.102	ENSCPOG00000009525	-	98	80.102	Cavia_porcellus
ENSELUG00000015062	-	58	80.102	ENSCCAG00000031524	-	98	80.102	Cebus_capucinus
ENSELUG00000015062	-	58	80.102	ENSCATG00000043125	-	98	80.102	Cercocebus_atys
ENSELUG00000015062	-	58	80.102	ENSCATG00000042826	-	98	80.102	Cercocebus_atys
ENSELUG00000015062	-	58	78.061	ENSCLAG00000017412	-	98	78.061	Chinchilla_lanigera
ENSELUG00000015062	-	58	78.061	ENSCLAG00000017409	-	98	78.061	Chinchilla_lanigera
ENSELUG00000015062	-	58	80.102	ENSCSAG00000000102	-	98	80.102	Chlorocebus_sabaeus
ENSELUG00000015062	-	58	80.110	ENSCGRG00001023387	-	96	77.436	Cricetulus_griseus_chok1gshd
ENSELUG00000015062	-	99	89.082	ENSCSEG00000013324	pabpc1a	99	89.241	Cynoglossus_semilaevis
ENSELUG00000015062	-	100	89.639	ENSCSEG00000015241	-	100	89.639	Cynoglossus_semilaevis
ENSELUG00000015062	-	100	88.281	ENSCVAG00000021872	pabpc1a	100	88.438	Cyprinodon_variegatus
ENSELUG00000015062	-	100	89.342	ENSCVAG00000005489	pabpc1b	100	89.342	Cyprinodon_variegatus
ENSELUG00000015062	-	100	90.895	ENSDARG00000021140	pabpc1b	99	93.617	Danio_rerio
ENSELUG00000015062	-	99	88.942	ENSDARG00000017219	pabpc1a	99	89.415	Danio_rerio
ENSELUG00000015062	-	58	80.423	ENSDNOG00000030926	-	98	78.571	Dasypus_novemcinctus
ENSELUG00000015062	-	58	77.551	ENSDORG00000011362	-	98	77.551	Dipodomys_ordii
ENSELUG00000015062	-	60	78.641	ENSEASG00005010399	-	98	78.641	Equus_asinus_asinus
ENSELUG00000015062	-	60	78.641	ENSECAG00000002620	-	98	78.641	Equus_caballus
ENSELUG00000015062	-	59	75.000	ENSEEUG00000008203	-	98	75.000	Erinaceus_europaeus
ENSELUG00000015062	-	58	80.102	ENSFCAG00000039701	-	98	80.102	Felis_catus
ENSELUG00000015062	-	58	80.102	ENSFDAG00000005484	-	98	80.102	Fukomys_damarensis
ENSELUG00000015062	-	100	91.052	ENSFHEG00000008186	pabpc1b	100	91.052	Fundulus_heteroclitus
ENSELUG00000015062	-	100	88.438	ENSFHEG00000018979	pabpc1a	100	88.594	Fundulus_heteroclitus
ENSELUG00000015062	-	99	87.191	ENSGMOG00000013448	pabpc1a	99	87.191	Gadus_morhua
ENSELUG00000015062	-	99	83.438	ENSGMOG00000002448	-	99	83.438	Gadus_morhua
ENSELUG00000015062	-	100	88.125	ENSGAFG00000019750	pabpc1a	100	88.438	Gambusia_affinis
ENSELUG00000015062	-	100	91.994	ENSGAFG00000010193	pabpc1b	100	91.994	Gambusia_affinis
ENSELUG00000015062	-	100	89.062	ENSGACG00000003572	pabpc1a	100	89.062	Gasterosteus_aculeatus
ENSELUG00000015062	-	100	89.457	ENSGACG00000003771	pabpc1b	100	89.457	Gasterosteus_aculeatus
ENSELUG00000015062	-	58	80.102	ENSGGOG00000038606	-	98	80.102	Gorilla_gorilla
ENSELUG00000015062	-	58	80.102	ENSGGOG00000043933	-	98	80.102	Gorilla_gorilla
ENSELUG00000015062	-	99	91.156	ENSHBUG00000020487	pabpc1a	100	91.156	Haplochromis_burtoni
ENSELUG00000015062	-	100	90.581	ENSHBUG00000002075	pabpc1b	100	90.581	Haplochromis_burtoni
ENSELUG00000015062	-	58	79.082	ENSHGLG00000019762	-	98	79.082	Heterocephalus_glaber_female
ENSELUG00000015062	-	58	79.082	ENSHGLG00000019668	-	98	79.082	Heterocephalus_glaber_female
ENSELUG00000015062	-	58	79.082	ENSHGLG00100020854	-	98	79.082	Heterocephalus_glaber_male
ENSELUG00000015062	-	98	75.435	ENSHCOG00000003175	pabpc1b	99	75.435	Hippocampus_comes
ENSELUG00000015062	-	100	88.438	ENSHCOG00000013502	pabpc1a	100	88.594	Hippocampus_comes
ENSELUG00000015062	-	74	54.470	ENSIPUG00000021244	-	65	54.470	Ictalurus_punctatus
ENSELUG00000015062	-	74	54.412	ENSIPUG00000018724	-	76	54.412	Ictalurus_punctatus
ENSELUG00000015062	-	99	87.184	ENSIPUG00000008848	pabpc1a	99	87.342	Ictalurus_punctatus
ENSELUG00000015062	-	100	86.499	ENSIPUG00000010791	-	100	86.499	Ictalurus_punctatus
ENSELUG00000015062	-	58	79.592	ENSSTOG00000022096	-	98	79.592	Ictidomys_tridecemlineatus
ENSELUG00000015062	-	58	79.592	ENSSTOG00000026028	-	98	79.592	Ictidomys_tridecemlineatus
ENSELUG00000015062	-	58	78.571	ENSJJAG00000007037	-	98	78.571	Jaculus_jaculus
ENSELUG00000015062	-	100	88.750	ENSKMAG00000000605	pabpc1a	100	88.750	Kryptolebias_marmoratus
ENSELUG00000015062	-	99	90.952	ENSKMAG00000008049	pabpc1b	99	91.111	Kryptolebias_marmoratus
ENSELUG00000015062	-	100	91.366	ENSLBEG00000026845	pabpc1b	100	91.366	Labrus_bergylta
ENSELUG00000015062	-	100	88.750	ENSLBEG00000024002	-	100	88.750	Labrus_bergylta
ENSELUG00000015062	-	59	79.487	ENSLAFG00000023096	-	98	79.487	Loxodonta_africana
ENSELUG00000015062	-	58	79.695	ENSMFAG00000028878	-	98	79.695	Macaca_fascicularis
ENSELUG00000015062	-	58	80.102	ENSMMUG00000039929	-	98	80.102	Macaca_mulatta
ENSELUG00000015062	-	58	80.102	ENSMMUG00000009740	-	98	80.102	Macaca_mulatta
ENSELUG00000015062	-	58	80.102	ENSMMUG00000037681	-	98	80.102	Macaca_mulatta
ENSELUG00000015062	-	58	80.102	ENSMNEG00000037732	-	98	80.102	Macaca_nemestrina
ENSELUG00000015062	-	58	80.102	ENSMLEG00000027495	-	98	80.102	Mandrillus_leucophaeus
ENSELUG00000015062	-	99	90.023	ENSMAMG00000004502	-	100	90.023	Mastacembelus_armatus
ENSELUG00000015062	-	100	91.523	ENSMAMG00000014610	pabpc1b	100	91.523	Mastacembelus_armatus
ENSELUG00000015062	-	99	91.156	ENSMZEG00005025416	pabpc1a	100	91.156	Maylandia_zebra
ENSELUG00000015062	-	100	90.581	ENSMZEG00005026745	pabpc1b	100	90.581	Maylandia_zebra
ENSELUG00000015062	-	58	80.102	ENSMICG00000047642	-	98	80.102	Microcebus_murinus
ENSELUG00000015062	-	100	87.127	ENSMMOG00000018009	pabpc1b	100	87.127	Mola_mola
ENSELUG00000015062	-	99	90.249	ENSMMOG00000018044	pabpc1a	100	90.249	Mola_mola
ENSELUG00000015062	-	99	66.614	ENSMODG00000015024	-	99	66.614	Monodelphis_domestica
ENSELUG00000015062	-	98	73.651	ENSMODG00000013156	-	98	73.968	Monodelphis_domestica
ENSELUG00000015062	-	100	87.656	ENSMALG00000013020	-	100	87.969	Monopterus_albus
ENSELUG00000015062	-	100	87.284	ENSMALG00000006066	pabpc1b	100	87.284	Monopterus_albus
ENSELUG00000015062	-	58	81.967	ENSNGAG00000012688	-	98	78.571	Nannospalax_galili
ENSELUG00000015062	-	100	90.738	ENSNBRG00000013737	pabpc1b	100	90.738	Neolamprologus_brichardi
ENSELUG00000015062	-	99	91.156	ENSNBRG00000003068	-	100	91.156	Neolamprologus_brichardi
ENSELUG00000015062	-	58	80.102	ENSNLEG00000018128	-	98	80.102	Nomascus_leucogenys
ENSELUG00000015062	-	58	79.592	ENSODEG00000018540	-	98	79.592	Octodon_degus
ENSELUG00000015062	-	100	90.581	ENSONIG00000002717	pabpc1b	100	90.581	Oreochromis_niloticus
ENSELUG00000015062	-	100	88.438	ENSONIG00000006871	-	100	88.438	Oreochromis_niloticus
ENSELUG00000015062	-	58	80.102	ENSOCUG00000002565	-	98	80.102	Oryctolagus_cuniculus
ENSELUG00000015062	-	100	85.243	ENSORLG00000003008	-	100	85.243	Oryzias_latipes
ENSELUG00000015062	-	99	93.381	ENSORLG00000002691	pabpc1a	100	93.381	Oryzias_latipes
ENSELUG00000015062	-	100	87.500	ENSORLG00020022398	pabpc1a	100	87.656	Oryzias_latipes_hni
ENSELUG00000015062	-	100	84.929	ENSORLG00020022259	-	100	84.929	Oryzias_latipes_hni
ENSELUG00000015062	-	100	87.344	ENSORLG00015013633	pabpc1	100	87.500	Oryzias_latipes_hsok
ENSELUG00000015062	-	100	85.400	ENSORLG00015010932	-	100	85.400	Oryzias_latipes_hsok
ENSELUG00000015062	-	99	82.579	ENSOMEG00000013627	pabpc1b	100	82.579	Oryzias_melastigma
ENSELUG00000015062	-	100	87.812	ENSOMEG00000020219	pabpc1a	100	88.125	Oryzias_melastigma
ENSELUG00000015062	-	58	80.102	ENSOGAG00000029513	-	98	80.102	Otolemur_garnettii
ENSELUG00000015062	-	58	80.102	ENSOGAG00000026047	-	98	80.102	Otolemur_garnettii
ENSELUG00000015062	-	58	80.102	ENSOARG00000005943	-	98	80.102	Ovis_aries
ENSELUG00000015062	-	58	80.102	ENSPPAG00000012920	-	98	80.102	Pan_paniscus
ENSELUG00000015062	-	58	80.102	ENSPPRG00000011809	-	98	80.102	Panthera_pardus
ENSELUG00000015062	-	58	80.102	ENSPPRG00000011804	-	98	80.102	Panthera_pardus
ENSELUG00000015062	-	58	80.102	ENSPTRG00000028252	-	98	80.102	Pan_troglodytes
ENSELUG00000015062	-	58	80.102	ENSPANG00000011549	-	98	80.102	Papio_anubis
ENSELUG00000015062	-	100	92.308	ENSPKIG00000005676	pabpc1b	100	92.308	Paramormyrops_kingsleyae
ENSELUG00000015062	-	70	91.982	ENSPMGG00000023134	-	97	91.982	Periophthalmus_magnuspinnatus
ENSELUG00000015062	-	70	92.634	ENSPMGG00000022487	pabpc1a	92	92.634	Periophthalmus_magnuspinnatus
ENSELUG00000015062	-	99	70.747	ENSPCIG00000016995	-	54	70.747	Phascolarctos_cinereus
ENSELUG00000015062	-	100	91.366	ENSPFOG00000005917	pabpc1b	100	91.366	Poecilia_formosa
ENSELUG00000015062	-	100	87.117	ENSPFOG00000010815	pabpc1a	100	87.423	Poecilia_formosa
ENSELUG00000015062	-	100	88.594	ENSPLAG00000004114	pabpc1a	100	88.906	Poecilia_latipinna
ENSELUG00000015062	-	100	91.680	ENSPLAG00000001388	pabpc1b	100	91.680	Poecilia_latipinna
ENSELUG00000015062	-	100	88.594	ENSPMEG00000001334	pabpc1a	100	88.906	Poecilia_mexicana
ENSELUG00000015062	-	100	91.366	ENSPMEG00000014399	pabpc1b	100	91.366	Poecilia_mexicana
ENSELUG00000015062	-	100	91.680	ENSPREG00000010911	pabpc1b	100	91.680	Poecilia_reticulata
ENSELUG00000015062	-	99	90.703	ENSPREG00000019595	pabpc1a	100	90.703	Poecilia_reticulata
ENSELUG00000015062	-	58	80.102	ENSPPYG00000020468	-	98	80.102	Pongo_abelii
ENSELUG00000015062	-	59	80.102	ENSPCAG00000005308	-	98	80.102	Procavia_capensis
ENSELUG00000015062	-	58	79.592	ENSPCOG00000026349	-	98	79.592	Propithecus_coquereli
ENSELUG00000015062	-	59	80.000	ENSPVAG00000016117	-	98	80.000	Pteropus_vampyrus
ENSELUG00000015062	-	100	88.750	ENSPNYG00000005192	pabpc1a	100	88.750	Pundamilia_nyererei
ENSELUG00000015062	-	100	90.581	ENSPNYG00000012578	pabpc1b	100	90.581	Pundamilia_nyererei
ENSELUG00000015062	-	100	88.401	ENSPNAG00000028408	pabpc1a	100	88.401	Pygocentrus_nattereri
ENSELUG00000015062	-	100	91.209	ENSPNAG00000024626	pabpc1b	100	91.366	Pygocentrus_nattereri
ENSELUG00000015062	-	58	80.102	ENSRBIG00000027173	-	98	80.102	Rhinopithecus_bieti
ENSELUG00000015062	-	99	89.277	ENSRBIG00000028738	-	95	89.277	Rhinopithecus_bieti
ENSELUG00000015062	-	58	80.102	ENSRROG00000017404	-	98	80.102	Rhinopithecus_roxellana
ENSELUG00000015062	-	98	64.593	ENSSHAG00000000511	-	100	64.593	Sarcophilus_harrisii
ENSELUG00000015062	-	100	87.284	ENSSFOG00015006662	pabpc1a	100	87.284	Scleropages_formosus
ENSELUG00000015062	-	100	91.824	ENSSFOG00015002752	-	100	91.824	Scleropages_formosus
ENSELUG00000015062	-	66	79.769	ENSSFOG00015019668	-	86	79.769	Scleropages_formosus
ENSELUG00000015062	-	100	88.281	ENSSMAG00000010803	pabpc1a	100	88.281	Scophthalmus_maximus
ENSELUG00000015062	-	99	91.627	ENSSMAG00000006869	pabpc1b	99	91.627	Scophthalmus_maximus
ENSELUG00000015062	-	100	89.953	ENSSDUG00000011965	pabpc1b	100	89.953	Seriola_dumerili
ENSELUG00000015062	-	100	88.438	ENSSDUG00000006675	pabpc1a	100	88.594	Seriola_dumerili
ENSELUG00000015062	-	100	88.438	ENSSLDG00000011661	pabpc1a	100	88.594	Seriola_lalandi_dorsalis
ENSELUG00000015062	-	100	92.175	ENSSLDG00000014156	pabpc1b	100	92.175	Seriola_lalandi_dorsalis
ENSELUG00000015062	-	100	88.750	ENSSPAG00000014453	-	100	88.906	Stegastes_partitus
ENSELUG00000015062	-	100	92.936	ENSSPAG00000019265	pabpc1b	100	92.936	Stegastes_partitus
ENSELUG00000015062	-	58	80.102	ENSSSCG00000036336	-	98	80.102	Sus_scrofa
ENSELUG00000015062	-	58	80.102	ENSSSCG00000032167	-	98	80.102	Sus_scrofa
ENSELUG00000015062	-	100	88.125	ENSTRUG00000011577	-	100	88.125	Takifugu_rubripes
ENSELUG00000015062	-	100	87.931	ENSTRUG00000003767	-	100	87.931	Takifugu_rubripes
ENSELUG00000015062	-	100	85.362	ENSTNIG00000013307	pabpc1a	100	85.362	Tetraodon_nigroviridis
ENSELUG00000015062	-	100	88.456	ENSTNIG00000009153	pabpc1b	100	88.456	Tetraodon_nigroviridis
ENSELUG00000015062	-	59	80.102	ENSTTRG00000013181	-	98	80.102	Tursiops_truncatus
ENSELUG00000015062	-	58	80.102	ENSUAMG00000008089	-	98	80.102	Ursus_americanus
ENSELUG00000015062	-	58	80.102	ENSUMAG00000003364	-	98	80.102	Ursus_maritimus
ENSELUG00000015062	-	97	53.710	ENSUMAG00000023926	-	89	67.671	Ursus_maritimus
ENSELUG00000015062	-	59	79.000	ENSVVUG00000015892	-	97	79.000	Vulpes_vulpes
ENSELUG00000015062	-	99	44.196	ENSXETG00000015439	-	100	44.196	Xenopus_tropicalis
ENSELUG00000015062	-	100	86.006	ENSXCOG00000017066	pabpc1a	100	86.164	Xiphophorus_couchianus
ENSELUG00000015062	-	100	86.813	ENSXCOG00000019901	pabpc1b	100	86.813	Xiphophorus_couchianus
ENSELUG00000015062	-	100	88.281	ENSXMAG00000002555	pabpc1a	100	88.594	Xiphophorus_maculatus
ENSELUG00000015062	-	100	91.837	ENSXMAG00000003753	pabpc1b	100	91.837	Xiphophorus_maculatus