EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000015093 (Gene tree)
Gene ID: 105013269
Gene Symbol: casc3
Alias: -
Full Name: CASC3%2C exon junction complex subunit
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 11980 bases
Position: chrLG11:14866617-14878596
Accession: 105013269
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000015120	Btz	PF09405.10	3.6e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000024118	-	4055	XM_010874670	ENSELUP00000015120	772 (aa)	XP_010872972	UPI000577E60D

Gene Model

Click here to download ENSELUG00000015093's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03013	RNA transport	KEGG
els03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000015093's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000015093	casc3	70	78.322	ENSACIG00000000720	casc3	93	75.155	Amphilophus_citrinellus
ENSELUG00000015093	casc3	100	55.966	ENSAOCG00000016676	casc3	100	58.488	Amphiprion_ocellaris
ENSELUG00000015093	casc3	100	56.049	ENSAPEG00000006787	casc3	100	58.437	Amphiprion_percula
ENSELUG00000015093	casc3	100	58.578	ENSATEG00000017196	casc3	100	58.795	Anabas_testudineus
ENSELUG00000015093	casc3	92	44.444	ENSACAG00000002674	CASC3	87	45.148	Anolis_carolinensis
ENSELUG00000015093	casc3	74	56.818	ENSANAG00000034820	-	91	56.037	Aotus_nancymaae
ENSELUG00000015093	casc3	52	64.815	ENSANAG00000031954	-	97	67.464	Aotus_nancymaae
ENSELUG00000015093	casc3	100	56.532	ENSACLG00000016198	casc3	100	57.528	Astatotilapia_calliptera
ENSELUG00000015093	casc3	99	63.717	ENSAMXG00000032452	casc3	98	63.843	Astyanax_mexicanus
ENSELUG00000015093	casc3	69	56.698	ENSCJAG00000016032	CASC3	82	57.453	Callithrix_jacchus
ENSELUG00000015093	casc3	70	57.929	ENSCAFG00020018882	CASC3	79	58.255	Canis_lupus_dingo
ENSELUG00000015093	casc3	72	57.843	ENSTSYG00000002975	CASC3	74	59.190	Carlito_syrichta
ENSELUG00000015093	casc3	92	52.387	ENSCSEG00000010047	casc3	100	53.357	Cynoglossus_semilaevis
ENSELUG00000015093	casc3	100	56.258	ENSCVAG00000014935	casc3	100	58.448	Cyprinodon_variegatus
ENSELUG00000015093	casc3	99	62.453	ENSDARG00000029911	casc3	98	62.579	Danio_rerio
ENSELUG00000015093	casc3	81	56.213	ENSDNOG00000017249	CASC3	83	57.101	Dasypus_novemcinctus
ENSELUG00000015093	casc3	78	36.290	ENSEBUG00000010654	casc3	72	42.077	Eptatretus_burgeri
ENSELUG00000015093	casc3	70	58.900	ENSEASG00005002909	CASC3	86	55.556	Equus_asinus_asinus
ENSELUG00000015093	casc3	91	43.166	ENSFALG00000000412	CASC3	98	44.851	Ficedula_albicollis
ENSELUG00000015093	casc3	82	47.713	ENSFDAG00000020696	CASC3	96	45.368	Fukomys_damarensis
ENSELUG00000015093	casc3	100	56.158	ENSFHEG00000015793	casc3	100	57.836	Fundulus_heteroclitus
ENSELUG00000015093	casc3	92	46.248	ENSGALG00000031813	CASC3	95	47.425	Gallus_gallus
ENSELUG00000015093	casc3	81	48.056	ENSGAGG00000008432	CASC3	86	57.357	Gopherus_agassizii
ENSELUG00000015093	casc3	100	56.410	ENSHBUG00000013155	casc3	100	57.856	Haplochromis_burtoni
ENSELUG00000015093	casc3	100	53.518	ENSHCOG00000002664	casc3	100	53.942	Hippocampus_comes
ENSELUG00000015093	casc3	99	59.772	ENSIPUG00000002679	casc3	98	59.748	Ictalurus_punctatus
ENSELUG00000015093	casc3	69	56.308	ENSJJAG00000023525	Casc3	74	56.575	Jaculus_jaculus
ENSELUG00000015093	casc3	78	60.260	ENSKMAG00000019507	casc3	99	57.564	Kryptolebias_marmoratus
ENSELUG00000015093	casc3	80	57.508	ENSLBEG00000005435	casc3	100	55.924	Labrus_bergylta
ENSELUG00000015093	casc3	80	54.462	ENSLACG00000013200	CASC3	86	55.077	Latimeria_chalumnae
ENSELUG00000015093	casc3	67	76.636	ENSLOCG00000013518	casc3	67	76.636	Lepisosteus_oculatus
ENSELUG00000015093	casc3	67	58.521	ENSMFAG00000041496	CASC3	91	58.824	Macaca_fascicularis
ENSELUG00000015093	casc3	95	54.904	ENSMAMG00000005235	casc3	100	56.813	Mastacembelus_armatus
ENSELUG00000015093	casc3	100	56.532	ENSMZEG00005003815	casc3	100	57.528	Maylandia_zebra
ENSELUG00000015093	casc3	80	48.265	ENSMGAG00000013247	CASC3	91	49.922	Meleagris_gallopavo
ENSELUG00000015093	casc3	100	53.226	ENSMMOG00000014339	casc3	100	53.358	Mola_mola
ENSELUG00000015093	casc3	60	57.468	ENSMODG00000013044	CASC3	76	57.276	Monodelphis_domestica
ENSELUG00000015093	casc3	61	86.458	ENSMALG00000019771	casc3	84	76.423	Monopterus_albus
ENSELUG00000015093	casc3	55	41.118	ENSOPRG00000007240	-	51	52.193	Ochotona_princeps
ENSELUG00000015093	casc3	100	55.893	ENSONIG00000009337	casc3	100	57.543	Oreochromis_niloticus
ENSELUG00000015093	casc3	100	54.859	ENSORLG00000023125	casc3	100	56.250	Oryzias_latipes
ENSELUG00000015093	casc3	99	55.831	ENSPKIG00000023186	casc3	97	55.402	Paramormyrops_kingsleyae
ENSELUG00000015093	casc3	65	55.700	ENSPCIG00000025678	CASC3	74	57.742	Phascolarctos_cinereus
ENSELUG00000015093	casc3	78	66.246	ENSPFOG00000017632	casc3	98	55.939	Poecilia_formosa
ENSELUG00000015093	casc3	61	78.417	ENSPREG00000011856	casc3	98	64.045	Poecilia_reticulata
ENSELUG00000015093	casc3	58	61.379	ENSPCOG00000008183	CASC3	83	58.385	Propithecus_coquereli
ENSELUG00000015093	casc3	100	56.410	ENSPNYG00000011962	casc3	100	57.856	Pundamilia_nyererei
ENSELUG00000015093	casc3	99	62.262	ENSPNAG00000015928	casc3	98	63.043	Pygocentrus_nattereri
ENSELUG00000015093	casc3	99	57.305	ENSSFOG00015002645	casc3	99	56.663	Scleropages_formosus
ENSELUG00000015093	casc3	93	53.189	ENSSMAG00000016096	casc3	100	55.822	Scophthalmus_maximus
ENSELUG00000015093	casc3	100	56.654	ENSSDUG00000016893	casc3	95	56.574	Seriola_dumerili
ENSELUG00000015093	casc3	79	60.504	ENSSLDG00000020308	casc3	98	60.784	Seriola_lalandi_dorsalis
ENSELUG00000015093	casc3	50	59.036	ENSSARG00000010378	CASC3	64	59.036	Sorex_araneus
ENSELUG00000015093	casc3	100	57.333	ENSSPAG00000023008	casc3	100	58.752	Stegastes_partitus
ENSELUG00000015093	casc3	75	46.350	ENSTGUG00000002300	CASC3	99	47.878	Taeniopygia_guttata
ENSELUG00000015093	casc3	95	54.522	ENSTRUG00000000673	casc3	100	55.019	Takifugu_rubripes
ENSELUG00000015093	casc3	60	67.464	ENSTBEG00000017459	CASC3	65	67.464	Tupaia_belangeri
ENSELUG00000015093	casc3	70	57.655	ENSUAMG00000015116	CASC3	82	57.994	Ursus_americanus
ENSELUG00000015093	casc3	60	59.649	ENSUMAG00000017697	CASC3	90	59.649	Ursus_maritimus