EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000015538 (Gene tree)
Gene ID: 105021181
Gene Symbol: lsm12b
Alias: lsm12|wu:fe01f11|zgc:66039
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 8657 bases
Position: chrLG05:20535684-20544340
Accession: 105021181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000015597	AD	PF09793.9	2.5e-24	1	1
ENSELUP00000036267	AD	PF09793.9	3.8e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000039418	-	5182	XM_010888675	ENSELUP00000015597	213 (aa)	XP_010886977	-
ENSELUT00000024712	-	576	-	ENSELUP00000036267	191 (aa)	-	-

Gene Model

Click here to download ENSELUG00000015538's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000015538's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000015538	lsm12b	100	88.776	ENSELUG00000000256	-	100	93.367

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000015538	lsm12b	100	79.592	ENSG00000161654	LSM12	100	84.184	Homo_sapiens
ENSELUG00000015538	lsm12b	100	91.327	ENSAPOG00000007907	lsm12b	100	95.918	Acanthochromis_polyacanthus
ENSELUG00000015538	lsm12b	100	77.889	ENSAMEG00000018321	LSM12	100	82.412	Ailuropoda_melanoleuca
ENSELUG00000015538	lsm12b	100	88.776	ENSACIG00000008538	lsm12b	100	93.367	Amphilophus_citrinellus
ENSELUG00000015538	lsm12b	96	95.588	ENSAOCG00000021847	lsm12b	91	95.588	Amphiprion_ocellaris
ENSELUG00000015538	lsm12b	100	90.816	ENSAPEG00000002252	lsm12b	100	95.408	Amphiprion_percula
ENSELUG00000015538	lsm12b	100	89.796	ENSATEG00000005705	lsm12b	100	94.388	Anabas_testudineus
ENSELUG00000015538	lsm12b	100	78.571	ENSACAG00000004618	LSM12	100	83.163	Anolis_carolinensis
ENSELUG00000015538	lsm12b	100	79.592	ENSANAG00000029011	LSM12	100	84.184	Aotus_nancymaae
ENSELUG00000015538	lsm12b	100	89.286	ENSACLG00000026332	lsm12b	100	93.878	Astatotilapia_calliptera
ENSELUG00000015538	lsm12b	100	86.224	ENSAMXG00000032952	lsm12b	100	90.816	Astyanax_mexicanus
ENSELUG00000015538	lsm12b	100	80.612	ENSAMXG00000036117	lsm12a	92	85.279	Astyanax_mexicanus
ENSELUG00000015538	lsm12b	100	79.592	ENSBTAG00000016252	LSM12	100	84.184	Bos_taurus
ENSELUG00000015538	lsm12b	100	79.592	ENSCJAG00000048480	LSM12	100	84.184	Callithrix_jacchus
ENSELUG00000015538	lsm12b	100	79.592	ENSCAFG00000014379	LSM12	92	84.264	Canis_familiaris
ENSELUG00000015538	lsm12b	100	79.592	ENSCAFG00020012173	LSM12	100	84.184	Canis_lupus_dingo
ENSELUG00000015538	lsm12b	100	79.592	ENSCHIG00000018175	LSM12	100	84.184	Capra_hircus
ENSELUG00000015538	lsm12b	100	79.592	ENSTSYG00000036361	LSM12	100	84.184	Carlito_syrichta
ENSELUG00000015538	lsm12b	82	74.074	ENSCAPG00000009647	LSM12	89	79.630	Cavia_aperea
ENSELUG00000015538	lsm12b	100	78.571	ENSCPOG00000012860	LSM12	100	83.163	Cavia_porcellus
ENSELUG00000015538	lsm12b	100	79.592	ENSCCAG00000032905	LSM12	100	84.184	Cebus_capucinus
ENSELUG00000015538	lsm12b	100	79.592	ENSCATG00000030577	-	100	84.184	Cercocebus_atys
ENSELUG00000015538	lsm12b	100	79.082	ENSCLAG00000015759	LSM12	100	83.673	Chinchilla_lanigera
ENSELUG00000015538	lsm12b	100	80.102	ENSCSAG00000003486	LSM12	100	84.694	Chlorocebus_sabaeus
ENSELUG00000015538	lsm12b	51	84.404	ENSCHOG00000001198	LSM12	100	84.404	Choloepus_hoffmanni
ENSELUG00000015538	lsm12b	100	79.592	ENSCPBG00000027105	LSM12	100	84.184	Chrysemys_picta_bellii
ENSELUG00000015538	lsm12b	100	79.592	ENSCANG00000043328	LSM12	100	84.184	Colobus_angolensis_palliatus
ENSELUG00000015538	lsm12b	100	79.592	ENSCGRG00001002094	Lsm12	100	84.184	Cricetulus_griseus_chok1gshd
ENSELUG00000015538	lsm12b	88	70.690	ENSCGRG00000004316	Lsm12	98	75.862	Cricetulus_griseus_crigri
ENSELUG00000015538	lsm12b	100	90.306	ENSCSEG00000008434	lsm12b	100	94.898	Cynoglossus_semilaevis
ENSELUG00000015538	lsm12b	100	90.306	ENSCVAG00000008755	lsm12b	100	94.898	Cyprinodon_variegatus
ENSELUG00000015538	lsm12b	100	87.755	ENSDARG00000109510	lsm12b	100	92.347	Danio_rerio
ENSELUG00000015538	lsm12b	100	82.143	ENSDARG00000028848	lsm12a	100	86.735	Danio_rerio
ENSELUG00000015538	lsm12b	100	79.082	ENSDNOG00000002418	LSM12	92	83.756	Dasypus_novemcinctus
ENSELUG00000015538	lsm12b	100	79.592	ENSDORG00000016381	Lsm12	100	84.184	Dipodomys_ordii
ENSELUG00000015538	lsm12b	82	31.928	FBgn0030364	Lsm12	76	32.530	Drosophila_melanogaster
ENSELUG00000015538	lsm12b	73	30.769	FBgn0036057	CG14164	83	31.013	Drosophila_melanogaster
ENSELUG00000015538	lsm12b	88	69.942	ENSETEG00000011012	-	99	74.566	Echinops_telfairi
ENSELUG00000015538	lsm12b	100	79.082	ENSETEG00000008374	LSM12	100	83.673	Echinops_telfairi
ENSELUG00000015538	lsm12b	85	61.078	ENSEBUG00000016299	lsm12a	92	65.269	Eptatretus_burgeri
ENSELUG00000015538	lsm12b	100	79.592	ENSEASG00005010155	LSM12	100	84.184	Equus_asinus_asinus
ENSELUG00000015538	lsm12b	100	79.592	ENSECAG00000009071	LSM12	100	84.184	Equus_caballus
ENSELUG00000015538	lsm12b	72	83.660	ENSEEUG00000002419	-	100	83.660	Erinaceus_europaeus
ENSELUG00000015538	lsm12b	100	79.592	ENSFCAG00000037021	LSM12	100	84.184	Felis_catus
ENSELUG00000015538	lsm12b	69	84.459	ENSFDAG00000008954	LSM12	87	84.459	Fukomys_damarensis
ENSELUG00000015538	lsm12b	100	90.306	ENSFHEG00000019913	lsm12b	100	94.898	Fundulus_heteroclitus
ENSELUG00000015538	lsm12b	80	88.608	ENSGMOG00000015449	lsm12b	100	94.304	Gadus_morhua
ENSELUG00000015538	lsm12b	72	84.314	ENSGALG00000039803	LSM12	100	84.314	Gallus_gallus
ENSELUG00000015538	lsm12b	100	89.796	ENSGAFG00000011829	lsm12b	100	94.388	Gambusia_affinis
ENSELUG00000015538	lsm12b	80	89.241	ENSGACG00000003428	lsm12b	100	94.937	Gasterosteus_aculeatus
ENSELUG00000015538	lsm12b	100	78.571	ENSGAGG00000021965	LSM12	100	83.163	Gopherus_agassizii
ENSELUG00000015538	lsm12b	100	79.592	ENSGGOG00000010589	-	100	84.184	Gorilla_gorilla
ENSELUG00000015538	lsm12b	85	88.024	ENSHBUG00000007667	lsm12b	74	93.413	Haplochromis_burtoni
ENSELUG00000015538	lsm12b	100	79.592	ENSHGLG00000011411	LSM12	100	84.184	Heterocephalus_glaber_female
ENSELUG00000015538	lsm12b	78	77.273	ENSHGLG00100000241	LSM12	82	83.117	Heterocephalus_glaber_male
ENSELUG00000015538	lsm12b	100	89.286	ENSHCOG00000002094	lsm12b	100	93.878	Hippocampus_comes
ENSELUG00000015538	lsm12b	100	86.224	ENSIPUG00000014800	lsm12	100	90.816	Ictalurus_punctatus
ENSELUG00000015538	lsm12b	99	79.381	ENSIPUG00000008936	lsm12a	99	84.021	Ictalurus_punctatus
ENSELUG00000015538	lsm12b	100	79.592	ENSSTOG00000007403	LSM12	100	84.184	Ictidomys_tridecemlineatus
ENSELUG00000015538	lsm12b	100	78.571	ENSJJAG00000004364	-	100	83.163	Jaculus_jaculus
ENSELUG00000015538	lsm12b	80	66.667	ENSJJAG00000014652	-	95	72.327	Jaculus_jaculus
ENSELUG00000015538	lsm12b	96	73.514	ENSJJAG00000011793	-	100	74.211	Jaculus_jaculus
ENSELUG00000015538	lsm12b	100	77.778	ENSKMAG00000007704	lsm12b	65	82.323	Kryptolebias_marmoratus
ENSELUG00000015538	lsm12b	100	90.306	ENSLBEG00000027999	lsm12b	100	94.898	Labrus_bergylta
ENSELUG00000015538	lsm12b	100	80.612	ENSLACG00000015981	LSM12	100	85.204	Latimeria_chalumnae
ENSELUG00000015538	lsm12b	100	85.714	ENSLOCG00000013079	lsm12b	100	90.355	Lepisosteus_oculatus
ENSELUG00000015538	lsm12b	100	79.592	ENSLAFG00000005202	LSM12	100	84.184	Loxodonta_africana
ENSELUG00000015538	lsm12b	100	79.592	ENSMFAG00000031376	LSM12	100	84.184	Macaca_fascicularis
ENSELUG00000015538	lsm12b	100	79.592	ENSMMUG00000006804	LSM12	100	84.184	Macaca_mulatta
ENSELUG00000015538	lsm12b	60	79.730	ENSMMUG00000042106	-	98	79.730	Macaca_mulatta
ENSELUG00000015538	lsm12b	100	79.592	ENSMNEG00000030594	-	100	84.184	Macaca_nemestrina
ENSELUG00000015538	lsm12b	100	79.592	ENSMLEG00000039934	LSM12	100	84.184	Mandrillus_leucophaeus
ENSELUG00000015538	lsm12b	100	90.306	ENSMAMG00000004279	lsm12b	100	94.898	Mastacembelus_armatus
ENSELUG00000015538	lsm12b	100	89.286	ENSMZEG00005005754	lsm12b	100	93.878	Maylandia_zebra
ENSELUG00000015538	lsm12b	100	80.102	ENSMICG00000037219	LSM12	100	84.694	Microcebus_murinus
ENSELUG00000015538	lsm12b	100	67.857	ENSMOCG00000017015	-	86	71.574	Microtus_ochrogaster
ENSELUG00000015538	lsm12b	100	79.592	ENSMOCG00000019878	-	100	84.184	Microtus_ochrogaster
ENSELUG00000015538	lsm12b	100	90.816	ENSMMOG00000020848	lsm12b	100	95.408	Mola_mola
ENSELUG00000015538	lsm12b	100	90.306	ENSMALG00000007578	lsm12b	100	94.898	Monopterus_albus
ENSELUG00000015538	lsm12b	100	79.082	MGP_CAROLIEiJ_G0017241	Lsm12	100	83.673	Mus_caroli
ENSELUG00000015538	lsm12b	100	79.592	ENSMUSG00000020922	Lsm12	100	84.184	Mus_musculus
ENSELUG00000015538	lsm12b	100	73.239	MGP_PahariEiJ_G0018371	Lsm12	100	77.465	Mus_pahari
ENSELUG00000015538	lsm12b	100	79.082	MGP_SPRETEiJ_G0018084	Lsm12	100	83.673	Mus_spretus
ENSELUG00000015538	lsm12b	100	80.102	ENSMLUG00000006391	LSM12	100	84.694	Myotis_lucifugus
ENSELUG00000015538	lsm12b	100	79.592	ENSNGAG00000001870	Lsm12	100	84.184	Nannospalax_galili
ENSELUG00000015538	lsm12b	100	53.695	ENSNGAG00000015429	-	100	58.128	Nannospalax_galili
ENSELUG00000015538	lsm12b	100	89.286	ENSNBRG00000006266	lsm12b	100	93.878	Neolamprologus_brichardi
ENSELUG00000015538	lsm12b	100	79.592	ENSNLEG00000005580	-	100	84.184	Nomascus_leucogenys
ENSELUG00000015538	lsm12b	84	78.313	ENSMEUG00000007501	-	100	83.735	Notamacropus_eugenii
ENSELUG00000015538	lsm12b	100	79.592	ENSOPRG00000008552	LSM12	100	84.184	Ochotona_princeps
ENSELUG00000015538	lsm12b	100	71.939	ENSODEG00000007886	-	74	76.531	Octodon_degus
ENSELUG00000015538	lsm12b	99	78.351	ENSODEG00000017998	-	99	82.990	Octodon_degus
ENSELUG00000015538	lsm12b	100	89.286	ENSONIG00000007933	lsm12b	100	93.878	Oreochromis_niloticus
ENSELUG00000015538	lsm12b	99	74.872	ENSOCUG00000024823	-	100	78.974	Oryctolagus_cuniculus
ENSELUG00000015538	lsm12b	99	74.359	ENSOCUG00000021254	-	100	78.974	Oryctolagus_cuniculus
ENSELUG00000015538	lsm12b	100	77.889	ENSOCUG00000008566	-	100	82.412	Oryctolagus_cuniculus
ENSELUG00000015538	lsm12b	99	74.359	ENSOCUG00000027889	-	100	78.974	Oryctolagus_cuniculus
ENSELUG00000015538	lsm12b	100	89.796	ENSORLG00000011310	lsm12b	100	94.388	Oryzias_latipes
ENSELUG00000015538	lsm12b	99	92.925	ENSORLG00020002060	lsm12b	96	94.608	Oryzias_latipes_hni
ENSELUG00000015538	lsm12b	99	92.925	ENSORLG00015001647	lsm12b	96	94.608	Oryzias_latipes_hsok
ENSELUG00000015538	lsm12b	97	94.175	ENSOMEG00000006184	lsm12b	96	94.175	Oryzias_melastigma
ENSELUG00000015538	lsm12b	100	80.102	ENSOGAG00000010489	LSM12	100	84.694	Otolemur_garnettii
ENSELUG00000015538	lsm12b	100	76.733	ENSOARG00000006589	LSM12	100	81.188	Ovis_aries
ENSELUG00000015538	lsm12b	100	69.898	ENSPPAG00000034974	-	100	74.490	Pan_paniscus
ENSELUG00000015538	lsm12b	100	79.592	ENSPPRG00000023420	LSM12	100	84.184	Panthera_pardus
ENSELUG00000015538	lsm12b	72	83.660	ENSPTIG00000012704	-	82	83.660	Panthera_tigris_altaica
ENSELUG00000015538	lsm12b	67	82.727	ENSPTIG00000014850	-	100	82.727	Panthera_tigris_altaica
ENSELUG00000015538	lsm12b	100	79.592	ENSPTRG00000009261	LSM12	100	84.184	Pan_troglodytes
ENSELUG00000015538	lsm12b	100	79.592	ENSPANG00000021315	-	100	84.184	Papio_anubis
ENSELUG00000015538	lsm12b	100	78.061	ENSPKIG00000017932	-	100	82.653	Paramormyrops_kingsleyae
ENSELUG00000015538	lsm12b	100	88.776	ENSPKIG00000021058	lsm12b	100	93.367	Paramormyrops_kingsleyae
ENSELUG00000015538	lsm12b	100	89.796	ENSPMGG00000021344	lsm12b	100	94.388	Periophthalmus_magnuspinnatus
ENSELUG00000015538	lsm12b	100	79.592	ENSPEMG00000012199	Lsm12	100	84.184	Peromyscus_maniculatus_bairdii
ENSELUG00000015538	lsm12b	89	63.429	ENSPMAG00000005461	lsm12a	99	66.857	Petromyzon_marinus
ENSELUG00000015538	lsm12b	100	79.082	ENSPCIG00000020244	LSM12	100	83.673	Phascolarctos_cinereus
ENSELUG00000015538	lsm12b	100	88.776	ENSPFOG00000015930	lsm12b	100	93.367	Poecilia_formosa
ENSELUG00000015538	lsm12b	100	88.776	ENSPLAG00000021089	lsm12b	100	93.367	Poecilia_latipinna
ENSELUG00000015538	lsm12b	100	88.776	ENSPMEG00000012961	lsm12b	100	93.367	Poecilia_mexicana
ENSELUG00000015538	lsm12b	87	88.889	ENSPREG00000010236	lsm12b	95	94.152	Poecilia_reticulata
ENSELUG00000015538	lsm12b	100	79.592	ENSPPYG00000008344	LSM12	100	84.184	Pongo_abelii
ENSELUG00000015538	lsm12b	81	79.245	ENSPCAG00000008790	LSM12	100	84.906	Procavia_capensis
ENSELUG00000015538	lsm12b	100	79.592	ENSPCOG00000027951	LSM12	100	84.184	Propithecus_coquereli
ENSELUG00000015538	lsm12b	100	79.082	ENSPVAG00000013706	LSM12	100	83.673	Pteropus_vampyrus
ENSELUG00000015538	lsm12b	100	89.286	ENSPNYG00000003386	lsm12b	100	93.878	Pundamilia_nyererei
ENSELUG00000015538	lsm12b	100	86.224	ENSPNAG00000004186	lsm12b	100	90.816	Pygocentrus_nattereri
ENSELUG00000015538	lsm12b	100	79.082	ENSPNAG00000018435	lsm12a	100	83.673	Pygocentrus_nattereri
ENSELUG00000015538	lsm12b	100	79.592	ENSRNOG00000020894	Lsm12	100	84.184	Rattus_norvegicus
ENSELUG00000015538	lsm12b	100	79.592	ENSRBIG00000027910	LSM12	100	84.184	Rhinopithecus_bieti
ENSELUG00000015538	lsm12b	99	47.938	ENSRROG00000000537	-	99	52.577	Rhinopithecus_roxellana
ENSELUG00000015538	lsm12b	100	79.592	ENSRROG00000045530	-	100	84.184	Rhinopithecus_roxellana
ENSELUG00000015538	lsm12b	100	79.592	ENSSBOG00000025310	LSM12	100	84.184	Saimiri_boliviensis_boliviensis
ENSELUG00000015538	lsm12b	80	75.949	ENSSHAG00000014914	LSM12	100	81.646	Sarcophilus_harrisii
ENSELUG00000015538	lsm12b	100	88.265	ENSSFOG00015020392	lsm12a	100	92.857	Scleropages_formosus
ENSELUG00000015538	lsm12b	100	86.735	ENSSFOG00015009612	lsm12	100	91.327	Scleropages_formosus
ENSELUG00000015538	lsm12b	100	90.306	ENSSMAG00000008089	lsm12b	100	94.898	Scophthalmus_maximus
ENSELUG00000015538	lsm12b	100	91.327	ENSSDUG00000012711	lsm12b	100	95.918	Seriola_dumerili
ENSELUG00000015538	lsm12b	100	91.327	ENSSLDG00000007404	lsm12b	100	95.918	Seriola_lalandi_dorsalis
ENSELUG00000015538	lsm12b	72	83.007	ENSSARG00000005537	LSM12	100	83.007	Sorex_araneus
ENSELUG00000015538	lsm12b	100	79.592	ENSSPUG00000011984	LSM12	100	84.184	Sphenodon_punctatus
ENSELUG00000015538	lsm12b	100	90.816	ENSSPAG00000017058	lsm12b	100	95.408	Stegastes_partitus
ENSELUG00000015538	lsm12b	100	79.592	ENSSSCG00000032394	LSM12	100	84.184	Sus_scrofa
ENSELUG00000015538	lsm12b	100	91.327	ENSTRUG00000007121	lsm12b	100	95.918	Takifugu_rubripes
ENSELUG00000015538	lsm12b	100	90.306	ENSTNIG00000014436	lsm12b	100	94.898	Tetraodon_nigroviridis
ENSELUG00000015538	lsm12b	100	77.041	ENSTBEG00000012392	-	100	81.633	Tupaia_belangeri
ENSELUG00000015538	lsm12b	100	79.082	ENSTBEG00000012523	-	100	83.673	Tupaia_belangeri
ENSELUG00000015538	lsm12b	100	79.592	ENSTTRG00000010433	LSM12	100	84.184	Tursiops_truncatus
ENSELUG00000015538	lsm12b	100	79.592	ENSUAMG00000006313	LSM12	100	84.184	Ursus_americanus
ENSELUG00000015538	lsm12b	80	75.316	ENSUMAG00000012987	LSM12	90	81.013	Ursus_maritimus
ENSELUG00000015538	lsm12b	100	78.571	ENSVPAG00000011145	LSM12	100	79.592	Vicugna_pacos
ENSELUG00000015538	lsm12b	100	79.592	ENSVVUG00000017581	LSM12	100	84.184	Vulpes_vulpes
ENSELUG00000015538	lsm12b	81	53.125	ENSXETG00000003371	lsm12	77	58.750	Xenopus_tropicalis
ENSELUG00000015538	lsm12b	100	89.796	ENSXCOG00000003994	lsm12b	100	94.388	Xiphophorus_couchianus
ENSELUG00000015538	lsm12b	100	89.796	ENSXMAG00000020950	lsm12b	100	94.388	Xiphophorus_maculatus