EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000015616 (Gene tree)
Gene ID: 105021645
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 25381 bases
Position: chrLG11:31264283-31289663
Accession: 105021645
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000015689	MMR_HSR1	PF01926.23	5.6e-08	1	1
ENSELUP00000036331	MMR_HSR1	PF01926.23	6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000039452	-	3170	XM_010889440	ENSELUP00000015689	487 (aa)	XP_010887742	UPI000576966C
ENSELUT00000024888	-	3218	-	ENSELUP00000036331	503 (aa)	-	-

Gene Model

Click here to download ENSELUG00000015616's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000015616's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000015616	srl	84	30.637	ENSELUG00000007973	-	73	31.436
ENSELUG00000015616	srl	83	32.506	ENSELUG00000019299	ehd2a	70	33.592
ENSELUG00000015616	srl	78	33.858	ENSELUG00000021876	ehd2b	68	34.211
ENSELUG00000015616	srl	86	31.442	ENSELUG00000004390	ehd4	73	31.442
ENSELUG00000015616	srl	83	30.542	ENSELUG00000016093	ehd1b	73	31.111
ENSELUG00000015616	srl	79	32.987	ENSELUG00000023984	ehd3	73	30.896

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000015616	srl	97	79.574	ENSG00000185739	SRL	97	84.524	Homo_sapiens
ENSELUG00000015616	srl	95	74.620	ENSAPOG00000012432	SRL	99	74.620	Acanthochromis_polyacanthus
ENSELUG00000015616	srl	100	85.451	ENSAPOG00000018093	srl	99	87.033	Acanthochromis_polyacanthus
ENSELUG00000015616	srl	97	79.281	ENSAMEG00000010862	SRL	52	79.281	Ailuropoda_melanoleuca
ENSELUG00000015616	srl	96	86.752	ENSACIG00000015799	srl	100	86.752	Amphilophus_citrinellus
ENSELUG00000015616	srl	95	75.054	ENSACIG00000015419	SRL	99	75.054	Amphilophus_citrinellus
ENSELUG00000015616	srl	98	73.895	ENSAOCG00000017049	SRL	100	73.895	Amphiprion_ocellaris
ENSELUG00000015616	srl	92	86.830	ENSAOCG00000007574	srl	97	90.736	Amphiprion_ocellaris
ENSELUG00000015616	srl	98	69.474	ENSAPEG00000006533	SRL	100	71.158	Amphiprion_percula
ENSELUG00000015616	srl	100	87.295	ENSAPEG00000006911	srl	100	87.295	Amphiprion_percula
ENSELUG00000015616	srl	100	86.653	ENSATEG00000024315	srl	100	86.885	Anabas_testudineus
ENSELUG00000015616	srl	94	74.786	ENSATEG00000009643	SRL	52	75.214	Anabas_testudineus
ENSELUG00000015616	srl	100	78.571	ENSACAG00000016380	SRL	89	80.244	Anolis_carolinensis
ENSELUG00000015616	srl	94	73.718	ENSACLG00000024674	SRL	54	78.750	Astatotilapia_calliptera
ENSELUG00000015616	srl	100	87.064	ENSACLG00000027685	srl	100	87.064	Astatotilapia_calliptera
ENSELUG00000015616	srl	89	75.694	ENSAMXG00000038693	SRL	100	72.103	Astyanax_mexicanus
ENSELUG00000015616	srl	100	86.037	ENSAMXG00000018789	srl	92	86.037	Astyanax_mexicanus
ENSELUG00000015616	srl	96	79.443	ENSBTAG00000001078	SRL	57	79.443	Bos_taurus
ENSELUG00000015616	srl	94	80.702	ENSCJAG00000019750	SRL	100	77.002	Callithrix_jacchus
ENSELUG00000015616	srl	97	78.814	ENSCAFG00000019233	SRL	85	78.814	Canis_familiaris
ENSELUG00000015616	srl	96	79.443	ENSCAFG00020025024	SRL	56	79.443	Canis_lupus_dingo
ENSELUG00000015616	srl	98	78.870	ENSCHIG00000017927	SRL	57	79.787	Capra_hircus
ENSELUG00000015616	srl	100	77.413	ENSTSYG00000007919	SRL	97	84.524	Carlito_syrichta
ENSELUG00000015616	srl	97	78.723	ENSCPOG00000012643	SRL	100	77.618	Cavia_porcellus
ENSELUG00000015616	srl	94	75.658	ENSCCAG00000032646	SRL	100	84.211	Cebus_capucinus
ENSELUG00000015616	srl	97	79.574	ENSCATG00000032227	-	100	77.207	Cercocebus_atys
ENSELUG00000015616	srl	97	78.936	ENSCLAG00000016242	SRL	100	77.823	Chinchilla_lanigera
ENSELUG00000015616	srl	79	85.492	ENSCHOG00000001618	SRL	52	85.492	Choloepus_hoffmanni
ENSELUG00000015616	srl	96	86.305	ENSCPBG00000026371	SRL	99	80.493	Chrysemys_picta_bellii
ENSELUG00000015616	srl	94	57.918	ENSCING00000005231	-	98	57.918	Ciona_intestinalis
ENSELUG00000015616	srl	97	79.574	ENSCANG00000035872	SRL	97	84.524	Colobus_angolensis_palliatus
ENSELUG00000015616	srl	97	79.281	ENSCGRG00001016630	Srl	100	77.618	Cricetulus_griseus_chok1gshd
ENSELUG00000015616	srl	97	79.281	ENSCGRG00000005458	Srl	100	77.618	Cricetulus_griseus_crigri
ENSELUG00000015616	srl	100	87.064	ENSCSEG00000016151	srl	100	87.064	Cynoglossus_semilaevis
ENSELUG00000015616	srl	99	70.807	ENSCSEG00000011866	SRL	94	70.807	Cynoglossus_semilaevis
ENSELUG00000015616	srl	100	87.269	ENSCVAG00000003513	srl	100	87.269	Cyprinodon_variegatus
ENSELUG00000015616	srl	94	74.409	ENSCVAG00000022465	SRL	60	74.518	Cyprinodon_variegatus
ENSELUG00000015616	srl	78	77.604	ENSDARG00000112959	CABZ01072309.1	100	77.604	Danio_rerio
ENSELUG00000015616	srl	100	86.037	ENSDARG00000104587	srl	100	86.037	Danio_rerio
ENSELUG00000015616	srl	94	81.140	ENSDNOG00000011643	SRL	54	80.128	Dasypus_novemcinctus
ENSELUG00000015616	srl	97	78.723	ENSDORG00000014807	Srl	100	77.618	Dipodomys_ordii
ENSELUG00000015616	srl	76	66.845	ENSEBUG00000015937	srl	94	66.845	Eptatretus_burgeri
ENSELUG00000015616	srl	93	80.879	ENSEASG00005000942	SRL	55	79.229	Equus_asinus_asinus
ENSELUG00000015616	srl	99	77.778	ENSECAG00000024219	SRL	99	77.778	Equus_caballus
ENSELUG00000015616	srl	100	77.413	ENSFCAG00000022075	SRL	100	77.413	Felis_catus
ENSELUG00000015616	srl	96	79.229	ENSFALG00000004328	SRL	64	79.229	Ficedula_albicollis
ENSELUG00000015616	srl	97	78.723	ENSFDAG00000006199	SRL	100	77.823	Fukomys_damarensis
ENSELUG00000015616	srl	100	71.200	ENSFHEG00000011854	SRL	99	74.569	Fundulus_heteroclitus
ENSELUG00000015616	srl	100	86.037	ENSFHEG00000011239	srl	100	86.037	Fundulus_heteroclitus
ENSELUG00000015616	srl	93	89.011	ENSGMOG00000014954	srl	99	89.011	Gadus_morhua
ENSELUG00000015616	srl	96	81.799	ENSGALG00000038884	SRL	98	79.749	Gallus_gallus
ENSELUG00000015616	srl	94	75.877	ENSGAFG00000016984	SRL	98	75.877	Gambusia_affinis
ENSELUG00000015616	srl	100	86.653	ENSGAFG00000000010	srl	100	86.653	Gambusia_affinis
ENSELUG00000015616	srl	94	88.840	ENSGACG00000011332	srl	100	88.840	Gasterosteus_aculeatus
ENSELUG00000015616	srl	97	79.574	ENSGGOG00000011312	-	100	77.002	Gorilla_gorilla
ENSELUG00000015616	srl	94	73.718	ENSHBUG00000015710	SRL	57	74.145	Haplochromis_burtoni
ENSELUG00000015616	srl	100	87.064	ENSHBUG00000007581	srl	100	87.064	Haplochromis_burtoni
ENSELUG00000015616	srl	97	78.936	ENSHGLG00000015271	SRL	100	77.823	Heterocephalus_glaber_female
ENSELUG00000015616	srl	97	78.936	ENSHGLG00100019378	SRL	100	77.823	Heterocephalus_glaber_male
ENSELUG00000015616	srl	94	73.605	ENSHCOG00000001012	SRL	50	73.605	Hippocampus_comes
ENSELUG00000015616	srl	100	87.526	ENSHCOG00000008687	srl	99	86.928	Hippocampus_comes
ENSELUG00000015616	srl	100	86.037	ENSIPUG00000012513	srl	100	86.037	Ictalurus_punctatus
ENSELUG00000015616	srl	92	68.889	ENSIPUG00000011609	SRL	95	68.889	Ictalurus_punctatus
ENSELUG00000015616	srl	97	78.858	ENSSTOG00000021151	-	100	77.413	Ictidomys_tridecemlineatus
ENSELUG00000015616	srl	100	77.823	ENSJJAG00000016400	Srl	100	77.823	Jaculus_jaculus
ENSELUG00000015616	srl	98	86.373	ENSKMAG00000014115	srl	94	90.588	Kryptolebias_marmoratus
ENSELUG00000015616	srl	93	76.044	ENSKMAG00000019537	SRL	100	76.044	Kryptolebias_marmoratus
ENSELUG00000015616	srl	100	86.448	ENSLBEG00000026643	srl	100	86.448	Labrus_bergylta
ENSELUG00000015616	srl	97	72.516	ENSLBEG00000013811	SRL	99	72.516	Labrus_bergylta
ENSELUG00000015616	srl	100	81.314	ENSLACG00000002825	SRL	100	81.314	Latimeria_chalumnae
ENSELUG00000015616	srl	99	83.058	ENSLOCG00000002644	srl	99	83.058	Lepisosteus_oculatus
ENSELUG00000015616	srl	96	79.060	ENSLAFG00000006329	SRL	52	79.060	Loxodonta_africana
ENSELUG00000015616	srl	91	81.179	ENSMFAG00000037383	SRL	97	84.524	Macaca_fascicularis
ENSELUG00000015616	srl	97	79.070	ENSMNEG00000019236	-	97	79.070	Macaca_nemestrina
ENSELUG00000015616	srl	97	73.191	ENSMLEG00000032156	SRL	91	80.988	Mandrillus_leucophaeus
ENSELUG00000015616	srl	94	86.900	ENSMAMG00000023322	srl	99	83.918	Mastacembelus_armatus
ENSELUG00000015616	srl	97	72.257	ENSMAMG00000013756	SRL	53	74.732	Mastacembelus_armatus
ENSELUG00000015616	srl	100	87.064	ENSMZEG00005004548	srl	100	87.064	Maylandia_zebra
ENSELUG00000015616	srl	94	73.932	ENSMZEG00005004010	SRL	57	74.359	Maylandia_zebra
ENSELUG00000015616	srl	97	80.213	ENSMGAG00000009342	SRL	95	82.143	Meleagris_gallopavo
ENSELUG00000015616	srl	97	78.936	ENSMICG00000032307	SRL	100	76.591	Microcebus_murinus
ENSELUG00000015616	srl	100	77.207	ENSMOCG00000008208	Srl	100	77.207	Microtus_ochrogaster
ENSELUG00000015616	srl	93	75.000	ENSMMOG00000021572	SRL	99	75.000	Mola_mola
ENSELUG00000015616	srl	96	85.653	ENSMMOG00000013970	srl	100	85.653	Mola_mola
ENSELUG00000015616	srl	96	79.657	ENSMODG00000016380	-	51	79.657	Monodelphis_domestica
ENSELUG00000015616	srl	89	75.926	ENSMALG00000000670	SRL	98	77.857	Monopterus_albus
ENSELUG00000015616	srl	100	83.984	ENSMALG00000005039	srl	98	86.433	Monopterus_albus
ENSELUG00000015616	srl	97	79.493	MGP_CAROLIEiJ_G0020400	Srl	100	78.234	Mus_caroli
ENSELUG00000015616	srl	97	79.493	ENSMUSG00000022519	Srl	100	78.234	Mus_musculus
ENSELUG00000015616	srl	94	81.140	MGP_PahariEiJ_G0016108	Srl	50	79.281	Mus_pahari
ENSELUG00000015616	srl	97	79.493	MGP_SPRETEiJ_G0021294	Srl	100	78.234	Mus_spretus
ENSELUG00000015616	srl	96	79.701	ENSMPUG00000015025	SRL	55	79.701	Mustela_putorius_furo
ENSELUG00000015616	srl	96	80.597	ENSMLUG00000030733	SRL	57	80.597	Myotis_lucifugus
ENSELUG00000015616	srl	94	80.702	ENSNGAG00000019741	Srl	100	77.618	Nannospalax_galili
ENSELUG00000015616	srl	100	85.010	ENSNBRG00000023775	srl	100	85.010	Neolamprologus_brichardi
ENSELUG00000015616	srl	94	73.077	ENSNBRG00000002422	SRL	56	76.852	Neolamprologus_brichardi
ENSELUG00000015616	srl	94	75.658	ENSNLEG00000029051	SRL	92	82.469	Nomascus_leucogenys
ENSELUG00000015616	srl	97	73.093	ENSOPRG00000000477	-	54	73.093	Ochotona_princeps
ENSELUG00000015616	srl	94	81.140	ENSODEG00000013256	SRL	100	77.618	Octodon_degus
ENSELUG00000015616	srl	100	87.474	ENSONIG00000005192	srl	100	87.474	Oreochromis_niloticus
ENSELUG00000015616	srl	97	78.390	ENSOCUG00000025140	SRL	50	78.390	Oryctolagus_cuniculus
ENSELUG00000015616	srl	95	73.319	ENSORLG00000015064	SRL	98	73.319	Oryzias_latipes
ENSELUG00000015616	srl	100	86.653	ENSORLG00000008291	srl	97	86.653	Oryzias_latipes
ENSELUG00000015616	srl	95	73.536	ENSORLG00020018173	SRL	98	73.536	Oryzias_latipes_hni
ENSELUG00000015616	srl	100	86.653	ENSORLG00020019784	srl	85	86.653	Oryzias_latipes_hni
ENSELUG00000015616	srl	100	86.242	ENSORLG00015009342	srl	97	86.242	Oryzias_latipes_hsok
ENSELUG00000015616	srl	95	73.319	ENSORLG00015019063	SRL	98	73.319	Oryzias_latipes_hsok
ENSELUG00000015616	srl	100	86.653	ENSOMEG00000010006	srl	100	86.653	Oryzias_melastigma
ENSELUG00000015616	srl	95	71.459	ENSOMEG00000005682	SRL	53	72.304	Oryzias_melastigma
ENSELUG00000015616	srl	97	78.556	ENSOGAG00000029266	SRL	56	78.556	Otolemur_garnettii
ENSELUG00000015616	srl	97	79.661	ENSOARG00000003074	SRL	58	78.586	Ovis_aries
ENSELUG00000015616	srl	97	79.574	ENSPPAG00000024919	-	97	84.524	Pan_paniscus
ENSELUG00000015616	srl	100	77.413	ENSPPRG00000010274	SRL	97	84.286	Panthera_pardus
ENSELUG00000015616	srl	100	77.413	ENSPTIG00000015162	SRL	97	84.286	Panthera_tigris_altaica
ENSELUG00000015616	srl	97	79.574	ENSPTRG00000007712	SRL	97	84.524	Pan_troglodytes
ENSELUG00000015616	srl	97	79.281	ENSPANG00000013804	SRL	98	79.281	Papio_anubis
ENSELUG00000015616	srl	100	75.770	ENSPKIG00000024974	SRL	94	75.770	Paramormyrops_kingsleyae
ENSELUG00000015616	srl	100	87.064	ENSPKIG00000006405	srl	100	87.064	Paramormyrops_kingsleyae
ENSELUG00000015616	srl	99	78.008	ENSPSIG00000008586	SRL	52	78.008	Pelodiscus_sinensis
ENSELUG00000015616	srl	96	86.938	ENSPMGG00000021081	srl	97	86.938	Periophthalmus_magnuspinnatus
ENSELUG00000015616	srl	94	73.085	ENSPMGG00000023505	-	100	73.085	Periophthalmus_magnuspinnatus
ENSELUG00000015616	srl	96	79.229	ENSPEMG00000015842	Srl	100	77.207	Peromyscus_maniculatus_bairdii
ENSELUG00000015616	srl	89	67.963	ENSPMAG00000004786	srl	99	67.963	Petromyzon_marinus
ENSELUG00000015616	srl	96	79.657	ENSPCIG00000012128	SRL	99	79.657	Phascolarctos_cinereus
ENSELUG00000015616	srl	100	86.653	ENSPFOG00000011408	srl	98	86.128	Poecilia_formosa
ENSELUG00000015616	srl	98	84.937	ENSPLAG00000008017	srl	100	84.937	Poecilia_latipinna
ENSELUG00000015616	srl	96	72.385	ENSPLAG00000002932	SRL	98	74.342	Poecilia_latipinna
ENSELUG00000015616	srl	100	84.600	ENSPMEG00000006745	srl	100	84.937	Poecilia_mexicana
ENSELUG00000015616	srl	96	72.594	ENSPMEG00000005890	SRL	61	72.594	Poecilia_mexicana
ENSELUG00000015616	srl	100	86.858	ENSPREG00000007751	srl	98	87.555	Poecilia_reticulata
ENSELUG00000015616	srl	96	73.486	ENSPREG00000000315	SRL	100	74.409	Poecilia_reticulata
ENSELUG00000015616	srl	89	82.407	ENSPPYG00000007053	SRL	98	84.524	Pongo_abelii
ENSELUG00000015616	srl	97	78.556	ENSPCAG00000003378	-	51	78.556	Procavia_capensis
ENSELUG00000015616	srl	97	79.281	ENSPCOG00000023135	SRL	97	84.286	Propithecus_coquereli
ENSELUG00000015616	srl	96	79.915	ENSPVAG00000006586	SRL	56	79.915	Pteropus_vampyrus
ENSELUG00000015616	srl	100	87.269	ENSPNYG00000001200	srl	100	87.269	Pundamilia_nyererei
ENSELUG00000015616	srl	94	73.932	ENSPNYG00000003423	SRL	57	74.359	Pundamilia_nyererei
ENSELUG00000015616	srl	93	75.165	ENSPNAG00000007361	-	91	75.165	Pygocentrus_nattereri
ENSELUG00000015616	srl	100	85.626	ENSPNAG00000023106	srl	100	85.626	Pygocentrus_nattereri
ENSELUG00000015616	srl	97	79.493	ENSRNOG00000005269	Srl	51	79.493	Rattus_norvegicus
ENSELUG00000015616	srl	97	78.814	ENSRBIG00000042358	SRL	51	78.814	Rhinopithecus_bieti
ENSELUG00000015616	srl	94	80.702	ENSSBOG00000029273	SRL	100	77.002	Saimiri_boliviensis_boliviensis
ENSELUG00000015616	srl	97	79.025	ENSSHAG00000011715	-	51	78.602	Sarcophilus_harrisii
ENSELUG00000015616	srl	100	87.680	ENSSFOG00015009773	srl	100	87.680	Scleropages_formosus
ENSELUG00000015616	srl	95	73.207	ENSSMAG00000002232	SRL	50	73.629	Scophthalmus_maximus
ENSELUG00000015616	srl	100	86.858	ENSSMAG00000016274	srl	100	86.858	Scophthalmus_maximus
ENSELUG00000015616	srl	94	86.900	ENSSDUG00000010808	srl	98	86.900	Seriola_dumerili
ENSELUG00000015616	srl	95	74.573	ENSSDUG00000009161	SRL	99	74.573	Seriola_dumerili
ENSELUG00000015616	srl	94	74.947	ENSSLDG00000014601	SRL	100	75.906	Seriola_lalandi_dorsalis
ENSELUG00000015616	srl	100	87.474	ENSSLDG00000022024	srl	100	87.474	Seriola_lalandi_dorsalis
ENSELUG00000015616	srl	96	79.487	ENSSPUG00000016859	SRL	99	79.487	Sphenodon_punctatus
ENSELUG00000015616	srl	100	87.526	ENSSPAG00000019105	srl	100	87.526	Stegastes_partitus
ENSELUG00000015616	srl	95	75.271	ENSSPAG00000014254	SRL	99	75.271	Stegastes_partitus
ENSELUG00000015616	srl	96	79.443	ENSSSCG00000007949	SRL	98	81.099	Sus_scrofa
ENSELUG00000015616	srl	96	79.657	ENSTGUG00000003951	-	99	79.657	Taeniopygia_guttata
ENSELUG00000015616	srl	74	86.188	ENSTGUG00000016121	-	100	86.188	Taeniopygia_guttata
ENSELUG00000015616	srl	89	75.463	ENSTRUG00000013310	SRL	55	76.761	Takifugu_rubripes
ENSELUG00000015616	srl	100	86.448	ENSTRUG00000006005	srl	100	86.448	Takifugu_rubripes
ENSELUG00000015616	srl	100	83.778	ENSTNIG00000009739	srl	100	83.778	Tetraodon_nigroviridis
ENSELUG00000015616	srl	96	79.104	ENSUAMG00000005701	SRL	56	79.104	Ursus_americanus
ENSELUG00000015616	srl	96	79.318	ENSUMAG00000002574	SRL	56	79.318	Ursus_maritimus
ENSELUG00000015616	srl	96	79.274	ENSVVUG00000016331	-	50	79.274	Vulpes_vulpes
ENSELUG00000015616	srl	99	77.479	ENSXETG00000017313	srl	99	79.318	Xenopus_tropicalis
ENSELUG00000015616	srl	89	88.710	ENSXCOG00000010424	srl	96	91.667	Xiphophorus_couchianus
ENSELUG00000015616	srl	96	74.249	ENSXCOG00000014584	SRL	99	74.249	Xiphophorus_couchianus
ENSELUG00000015616	srl	96	73.013	ENSXMAG00000027598	SRL	63	73.222	Xiphophorus_maculatus
ENSELUG00000015616	srl	100	86.858	ENSXMAG00000004625	srl	95	86.858	Xiphophorus_maculatus