EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000016262 (Gene tree)
Gene ID: 105018441
Gene Symbol: -
Alias: cpsf5|zgc:63966
Full Name: cleavage and polyadenylation specificity factor subunit 5
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 10174 bases
Position: chrLG19:25845786-25855959
Accession: 105018441
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000016455	NUDIX_2	PF13869.6	1.1e-79	1	1
ENSELUP00000036844	NUDIX_2	PF13869.6	1.1e-79	1	1
ENSELUP00000016477	NUDIX_2	PF13869.6	1.7e-79	1	1
ENSELUP00000036842	NUDIX_2	PF13869.6	2.2e-43	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000025793	-	2443	-	ENSELUP00000016455	226 (aa)	-	UPI0005777328
ENSELUT00000025833	-	2539	XM_013138970	ENSELUP00000036844	226 (aa)	XP_012994424	UPI0005777328
ENSELUT00000025834	-	2487	-	ENSELUP00000016477	263 (aa)	-	-
ENSELUT00000025813	-	2463	-	ENSELUP00000036842	236 (aa)	-	-

Gene Model

Click here to download ENSELUG00000016262's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000016262's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000016262	-	100	88.696	ENSELUG00000011938	-	96	88.696

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000016262	-	100	91.228	ENSG00000167005	NUDT21	100	96.644	Homo_sapiens
ENSELUG00000016262	-	100	91.266	ENSAPOG00000022515	nudt21	100	91.266	Acanthochromis_polyacanthus
ENSELUG00000016262	-	100	90.789	ENSAMEG00000016628	NUDT21	100	90.789	Ailuropoda_melanoleuca
ENSELUG00000016262	-	100	90.308	ENSACIG00000002809	nudt21	100	90.308	Amphilophus_citrinellus
ENSELUG00000016262	-	100	91.266	ENSAOCG00000004820	nudt21	100	91.266	Amphiprion_ocellaris
ENSELUG00000016262	-	100	91.266	ENSAPEG00000013434	nudt21	100	91.266	Amphiprion_percula
ENSELUG00000016262	-	100	91.266	ENSATEG00000002304	nudt21	100	91.266	Anabas_testudineus
ENSELUG00000016262	-	82	95.161	ENSAPLG00000012153	NUDT21	97	95.161	Anas_platyrhynchos
ENSELUG00000016262	-	100	91.228	ENSACAG00000007323	NUDT21	100	91.228	Anolis_carolinensis
ENSELUG00000016262	-	96	72.727	ENSANAG00000031404	-	99	72.727	Aotus_nancymaae
ENSELUG00000016262	-	100	91.228	ENSANAG00000034588	-	100	91.228	Aotus_nancymaae
ENSELUG00000016262	-	100	87.611	ENSANAG00000020715	-	100	87.611	Aotus_nancymaae
ENSELUG00000016262	-	100	90.749	ENSACLG00000004389	nudt21	100	90.749	Astatotilapia_calliptera
ENSELUG00000016262	-	100	93.421	ENSAMXG00000043933	nudt21	100	93.421	Astyanax_mexicanus
ENSELUG00000016262	-	100	91.228	ENSBTAG00000010207	NUDT21	100	91.228	Bos_taurus
ENSELUG00000016262	-	95	65.455	WBGene00009668	cfim-1	97	65.455	Caenorhabditis_elegans
ENSELUG00000016262	-	100	91.228	ENSCJAG00000041932	NUDT21	100	91.228	Callithrix_jacchus
ENSELUG00000016262	-	82	48.925	ENSCAFG00000030119	-	87	48.925	Canis_familiaris
ENSELUG00000016262	-	100	84.681	ENSCAFG00000002667	-	100	84.681	Canis_familiaris
ENSELUG00000016262	-	88	72.500	ENSCAFG00000006152	-	96	72.500	Canis_familiaris
ENSELUG00000016262	-	100	91.228	ENSCAFG00000023283	-	100	91.228	Canis_familiaris
ENSELUG00000016262	-	100	89.035	ENSCAFG00020004953	-	92	89.035	Canis_lupus_dingo
ENSELUG00000016262	-	87	95.918	ENSCAFG00020010371	-	84	95.918	Canis_lupus_dingo
ENSELUG00000016262	-	100	91.228	ENSCHIG00000026616	NUDT21	100	91.228	Capra_hircus
ENSELUG00000016262	-	100	91.228	ENSTSYG00000014602	NUDT21	100	91.228	Carlito_syrichta
ENSELUG00000016262	-	52	95.763	ENSCAPG00000010638	NUDT21	100	95.763	Cavia_aperea
ENSELUG00000016262	-	100	89.474	ENSCPOG00000003705	NUDT21	96	97.340	Cavia_porcellus
ENSELUG00000016262	-	100	70.175	ENSCCAG00000027748	-	100	70.175	Cebus_capucinus
ENSELUG00000016262	-	100	91.228	ENSCCAG00000035510	NUDT21	100	91.228	Cebus_capucinus
ENSELUG00000016262	-	100	91.228	ENSCATG00000042445	NUDT21	100	91.228	Cercocebus_atys
ENSELUG00000016262	-	100	91.228	ENSCLAG00000005751	NUDT21	100	91.228	Chinchilla_lanigera
ENSELUG00000016262	-	100	91.228	ENSCSAG00000005136	NUDT21	100	91.228	Chlorocebus_sabaeus
ENSELUG00000016262	-	61	98.000	ENSCHOG00000012165	-	61	98.000	Choloepus_hoffmanni
ENSELUG00000016262	-	100	91.228	ENSCPBG00000011976	NUDT21	100	91.228	Chrysemys_picta_bellii
ENSELUG00000016262	-	86	86.667	ENSCING00000018240	-	97	75.862	Ciona_intestinalis
ENSELUG00000016262	-	99	74.684	ENSCSAVG00000004322	-	99	74.684	Ciona_savignyi
ENSELUG00000016262	-	100	91.228	ENSCANG00000036650	NUDT21	100	91.228	Colobus_angolensis_palliatus
ENSELUG00000016262	-	100	91.228	ENSCGRG00001016313	Nudt21	100	91.228	Cricetulus_griseus_chok1gshd
ENSELUG00000016262	-	93	69.811	ENSCGRG00001007481	-	96	69.811	Cricetulus_griseus_chok1gshd
ENSELUG00000016262	-	100	91.228	ENSCGRG00000016451	Nudt21	100	91.228	Cricetulus_griseus_crigri
ENSELUG00000016262	-	93	69.811	ENSCGRG00000009012	-	96	69.811	Cricetulus_griseus_crigri
ENSELUG00000016262	-	100	91.703	ENSCSEG00000001524	nudt21	100	91.703	Cynoglossus_semilaevis
ENSELUG00000016262	-	100	92.140	ENSCVAG00000009683	nudt21	100	92.140	Cyprinodon_variegatus
ENSELUG00000016262	-	100	92.105	ENSDARG00000003153	nudt21	100	92.105	Danio_rerio
ENSELUG00000016262	-	100	83.772	ENSDNOG00000034510	-	100	83.772	Dasypus_novemcinctus
ENSELUG00000016262	-	100	91.228	ENSDORG00000005129	-	100	91.228	Dipodomys_ordii
ENSELUG00000016262	-	99	65.179	ENSDORG00000030074	-	100	65.179	Dipodomys_ordii
ENSELUG00000016262	-	97	77.293	FBgn0035987	CG3689	97	77.293	Drosophila_melanogaster
ENSELUG00000016262	-	97	90.950	ENSETEG00000013634	NUDT21	100	90.950	Echinops_telfairi
ENSELUG00000016262	-	97	83.258	ENSEBUG00000002498	nudt21	99	88.947	Eptatretus_burgeri
ENSELUG00000016262	-	100	91.228	ENSEASG00005004882	NUDT21	100	91.228	Equus_asinus_asinus
ENSELUG00000016262	-	100	91.228	ENSECAG00000001043	NUDT21	100	91.228	Equus_caballus
ENSELUG00000016262	-	100	91.228	ENSEEUG00000003402	NUDT21	100	91.228	Erinaceus_europaeus
ENSELUG00000016262	-	100	91.228	ENSFCAG00000008669	NUDT21	100	91.228	Felis_catus
ENSELUG00000016262	-	100	91.228	ENSFALG00000007561	NUDT21	100	91.228	Ficedula_albicollis
ENSELUG00000016262	-	100	91.228	ENSFDAG00000011750	NUDT21	100	91.228	Fukomys_damarensis
ENSELUG00000016262	-	81	96.703	ENSFHEG00000011485	nudt21	88	96.703	Fundulus_heteroclitus
ENSELUG00000016262	-	97	89.238	ENSGMOG00000002872	nudt21	100	89.238	Gadus_morhua
ENSELUG00000016262	-	100	91.228	ENSGALG00000003084	NUDT21	50	90.830	Gallus_gallus
ENSELUG00000016262	-	100	92.140	ENSGAFG00000017473	nudt21	100	92.140	Gambusia_affinis
ENSELUG00000016262	-	99	88.158	ENSGACG00000015869	nudt21	97	88.158	Gasterosteus_aculeatus
ENSELUG00000016262	-	100	91.228	ENSGAGG00000017367	NUDT21	100	91.228	Gopherus_agassizii
ENSELUG00000016262	-	100	91.228	ENSGGOG00000002375	NUDT21	100	91.228	Gorilla_gorilla
ENSELUG00000016262	-	97	90.498	ENSHBUG00000015015	nudt21	100	90.498	Haplochromis_burtoni
ENSELUG00000016262	-	100	91.228	ENSHGLG00000015947	NUDT21	100	91.228	Heterocephalus_glaber_female
ENSELUG00000016262	-	100	85.526	ENSHGLG00100009154	-	100	85.526	Heterocephalus_glaber_male
ENSELUG00000016262	-	100	82.895	ENSHGLG00100000342	-	100	82.895	Heterocephalus_glaber_male
ENSELUG00000016262	-	100	91.228	ENSHGLG00100011788	NUDT21	100	91.228	Heterocephalus_glaber_male
ENSELUG00000016262	-	100	90.393	ENSHCOG00000004360	nudt21	100	90.393	Hippocampus_comes
ENSELUG00000016262	-	100	93.421	ENSIPUG00000004208	nudt21	100	93.421	Ictalurus_punctatus
ENSELUG00000016262	-	100	91.228	ENSSTOG00000005838	NUDT21	100	91.228	Ictidomys_tridecemlineatus
ENSELUG00000016262	-	100	91.228	ENSJJAG00000017101	Nudt21	100	91.228	Jaculus_jaculus
ENSELUG00000016262	-	100	91.775	ENSKMAG00000008705	nudt21	100	91.775	Kryptolebias_marmoratus
ENSELUG00000016262	-	100	89.956	ENSLBEG00000024494	nudt21	100	89.956	Labrus_bergylta
ENSELUG00000016262	-	100	91.667	ENSLACG00000015324	NUDT21	100	91.667	Latimeria_chalumnae
ENSELUG00000016262	-	100	92.105	ENSLOCG00000008005	nudt21	100	92.105	Lepisosteus_oculatus
ENSELUG00000016262	-	100	91.228	ENSLAFG00000028465	-	100	91.228	Loxodonta_africana
ENSELUG00000016262	-	88	71.859	ENSLAFG00000029402	-	100	71.859	Loxodonta_africana
ENSELUG00000016262	-	100	91.228	ENSMFAG00000038276	NUDT21	100	91.228	Macaca_fascicularis
ENSELUG00000016262	-	100	91.228	ENSMMUG00000038955	NUDT21	100	91.228	Macaca_mulatta
ENSELUG00000016262	-	100	91.228	ENSMNEG00000038680	NUDT21	100	91.228	Macaca_nemestrina
ENSELUG00000016262	-	100	91.228	ENSMLEG00000041489	NUDT21	100	91.228	Mandrillus_leucophaeus
ENSELUG00000016262	-	100	91.266	ENSMAMG00000020931	nudt21	100	91.266	Mastacembelus_armatus
ENSELUG00000016262	-	100	90.749	ENSMZEG00005013153	nudt21	100	90.749	Maylandia_zebra
ENSELUG00000016262	-	83	97.340	ENSMGAG00000000975	NUDT21	100	97.340	Meleagris_gallopavo
ENSELUG00000016262	-	100	91.228	ENSMAUG00000000829	Nudt21	100	91.228	Mesocricetus_auratus
ENSELUG00000016262	-	100	91.228	ENSMICG00000046719	NUDT21	100	91.228	Microcebus_murinus
ENSELUG00000016262	-	100	91.228	ENSMOCG00000018234	Nudt21	100	91.228	Microtus_ochrogaster
ENSELUG00000016262	-	100	85.590	ENSMMOG00000016237	nudt21	100	85.590	Mola_mola
ENSELUG00000016262	-	100	91.228	ENSMODG00000013371	NUDT21	100	91.228	Monodelphis_domestica
ENSELUG00000016262	-	99	84.956	ENSMALG00000000627	nudt21	98	84.956	Monopterus_albus
ENSELUG00000016262	-	100	91.228	MGP_CAROLIEiJ_G0031388	Nudt21	100	91.228	Mus_caroli
ENSELUG00000016262	-	100	91.228	ENSMUSG00000031754	Nudt21	100	91.228	Mus_musculus
ENSELUG00000016262	-	100	91.228	MGP_PahariEiJ_G0022987	Nudt21	100	91.228	Mus_pahari
ENSELUG00000016262	-	100	91.228	MGP_SPRETEiJ_G0032507	Nudt21	100	91.228	Mus_spretus
ENSELUG00000016262	-	100	91.228	ENSMPUG00000003451	-	100	91.228	Mustela_putorius_furo
ENSELUG00000016262	-	100	90.789	ENSMPUG00000019793	-	100	90.789	Mustela_putorius_furo
ENSELUG00000016262	-	100	91.228	ENSMLUG00000004968	NUDT21	100	91.228	Myotis_lucifugus
ENSELUG00000016262	-	100	91.228	ENSNGAG00000023358	Nudt21	100	91.228	Nannospalax_galili
ENSELUG00000016262	-	97	90.498	ENSNBRG00000009313	nudt21	100	90.498	Neolamprologus_brichardi
ENSELUG00000016262	-	79	93.258	ENSNLEG00000009890	-	91	93.258	Nomascus_leucogenys
ENSELUG00000016262	-	100	91.228	ENSNLEG00000001963	NUDT21	100	91.228	Nomascus_leucogenys
ENSELUG00000016262	-	100	90.789	ENSMEUG00000015461	NUDT21	100	90.789	Notamacropus_eugenii
ENSELUG00000016262	-	100	89.035	ENSOPRG00000006689	NUDT21	100	89.035	Ochotona_princeps
ENSELUG00000016262	-	100	91.228	ENSODEG00000017012	-	100	91.228	Octodon_degus
ENSELUG00000016262	-	100	81.579	ENSODEG00000002256	-	100	81.579	Octodon_degus
ENSELUG00000016262	-	100	90.749	ENSONIG00000005734	nudt21	100	90.749	Oreochromis_niloticus
ENSELUG00000016262	-	91	94.660	ENSOANG00000012782	NUDT21	88	96.500	Ornithorhynchus_anatinus
ENSELUG00000016262	-	100	91.228	ENSOCUG00000017224	-	100	91.228	Oryctolagus_cuniculus
ENSELUG00000016262	-	100	86.404	ENSOCUG00000021881	-	100	86.404	Oryctolagus_cuniculus
ENSELUG00000016262	-	100	89.912	ENSOCUG00000027084	-	100	89.912	Oryctolagus_cuniculus
ENSELUG00000016262	-	100	91.703	ENSORLG00000008789	nudt21	100	91.703	Oryzias_latipes
ENSELUG00000016262	-	100	91.703	ENSORLG00020007635	nudt21	100	91.703	Oryzias_latipes_hni
ENSELUG00000016262	-	100	91.703	ENSORLG00015005300	nudt21	100	91.703	Oryzias_latipes_hsok
ENSELUG00000016262	-	100	91.266	ENSOMEG00000002368	nudt21	100	91.266	Oryzias_melastigma
ENSELUG00000016262	-	100	91.228	ENSOGAG00000014888	NUDT21	100	91.228	Otolemur_garnettii
ENSELUG00000016262	-	100	79.204	ENSOGAG00000033902	-	100	79.204	Otolemur_garnettii
ENSELUG00000016262	-	100	91.228	ENSOARG00000018460	NUDT21	100	91.228	Ovis_aries
ENSELUG00000016262	-	100	91.150	ENSPPAG00000043853	NUDT21	100	91.150	Pan_paniscus
ENSELUG00000016262	-	100	91.228	ENSPPRG00000023740	NUDT21	100	91.228	Panthera_pardus
ENSELUG00000016262	-	100	91.228	ENSPTIG00000021352	NUDT21	100	91.228	Panthera_tigris_altaica
ENSELUG00000016262	-	100	91.228	ENSPTRG00000008131	NUDT21	100	91.228	Pan_troglodytes
ENSELUG00000016262	-	100	91.228	ENSPANG00000019149	NUDT21	100	91.228	Papio_anubis
ENSELUG00000016262	-	100	92.982	ENSPKIG00000001620	nudt21	100	92.982	Paramormyrops_kingsleyae
ENSELUG00000016262	-	100	92.544	ENSPKIG00000022541	-	100	92.544	Paramormyrops_kingsleyae
ENSELUG00000016262	-	71	96.894	ENSPSIG00000008178	NUDT21	100	96.894	Pelodiscus_sinensis
ENSELUG00000016262	-	91	81.731	ENSPMGG00000002636	nudt21	84	81.731	Periophthalmus_magnuspinnatus
ENSELUG00000016262	-	100	91.228	ENSPEMG00000015463	Nudt21	100	91.228	Peromyscus_maniculatus_bairdii
ENSELUG00000016262	-	100	84.956	ENSPMAG00000000684	nudt21	100	84.956	Petromyzon_marinus
ENSELUG00000016262	-	100	91.228	ENSPCIG00000027199	NUDT21	100	91.228	Phascolarctos_cinereus
ENSELUG00000016262	-	100	92.140	ENSPFOG00000001419	nudt21	100	92.140	Poecilia_formosa
ENSELUG00000016262	-	100	92.140	ENSPLAG00000016420	nudt21	100	92.140	Poecilia_latipinna
ENSELUG00000016262	-	100	92.140	ENSPMEG00000022481	nudt21	100	92.140	Poecilia_mexicana
ENSELUG00000016262	-	100	92.140	ENSPREG00000001285	nudt21	100	92.140	Poecilia_reticulata
ENSELUG00000016262	-	100	91.228	ENSPPYG00000007365	NUDT21	100	91.228	Pongo_abelii
ENSELUG00000016262	-	100	79.825	ENSPCAG00000003875	NUDT21	100	79.825	Procavia_capensis
ENSELUG00000016262	-	91	80.583	ENSPCOG00000027587	-	96	80.583	Propithecus_coquereli
ENSELUG00000016262	-	96	74.545	ENSPCOG00000020893	-	99	74.545	Propithecus_coquereli
ENSELUG00000016262	-	100	91.228	ENSPCOG00000016104	-	100	91.228	Propithecus_coquereli
ENSELUG00000016262	-	83	97.340	ENSPVAG00000014583	NUDT21	100	97.340	Pteropus_vampyrus
ENSELUG00000016262	-	83	97.340	ENSPNYG00000014773	nudt21	94	97.340	Pundamilia_nyererei
ENSELUG00000016262	-	100	93.421	ENSPNAG00000017032	nudt21	100	93.421	Pygocentrus_nattereri
ENSELUG00000016262	-	100	91.228	ENSRNOG00000042983	Nudt21	100	91.228	Rattus_norvegicus
ENSELUG00000016262	-	100	91.228	ENSRBIG00000033736	-	100	91.228	Rhinopithecus_bieti
ENSELUG00000016262	-	100	89.912	ENSRBIG00000030142	-	100	89.912	Rhinopithecus_bieti
ENSELUG00000016262	-	100	91.228	ENSRROG00000034864	NUDT21	100	91.228	Rhinopithecus_roxellana
ENSELUG00000016262	-	100	91.228	ENSSBOG00000033712	NUDT21	100	91.228	Saimiri_boliviensis_boliviensis
ENSELUG00000016262	-	100	91.228	ENSSHAG00000009651	NUDT21	100	91.228	Sarcophilus_harrisii
ENSELUG00000016262	-	100	92.140	ENSSFOG00015013984	nudt21	100	92.140	Scleropages_formosus
ENSELUG00000016262	-	100	93.421	ENSSFOG00015011349	nudt21	80	93.421	Scleropages_formosus
ENSELUG00000016262	-	100	91.228	ENSSMAG00000000646	nudt21	100	91.228	Scophthalmus_maximus
ENSELUG00000016262	-	100	91.266	ENSSDUG00000019001	nudt21	100	91.266	Seriola_dumerili
ENSELUG00000016262	-	100	91.266	ENSSLDG00000018315	nudt21	100	91.266	Seriola_lalandi_dorsalis
ENSELUG00000016262	-	100	91.228	ENSSARG00000006493	NUDT21	100	91.228	Sorex_araneus
ENSELUG00000016262	-	100	91.228	ENSSPUG00000004128	NUDT21	100	91.228	Sphenodon_punctatus
ENSELUG00000016262	-	100	91.266	ENSSPAG00000010060	nudt21	100	91.266	Stegastes_partitus
ENSELUG00000016262	-	85	70.833	ENSSSCG00000007921	-	83	72.941	Sus_scrofa
ENSELUG00000016262	-	100	78.947	ENSSSCG00000004786	-	100	78.947	Sus_scrofa
ENSELUG00000016262	-	100	56.710	ENSSSCG00000032485	-	100	57.018	Sus_scrofa
ENSELUG00000016262	-	100	91.667	ENSSSCG00000034521	NUDT21	100	91.667	Sus_scrofa
ENSELUG00000016262	-	100	91.228	ENSTGUG00000006599	NUDT21	100	91.228	Taeniopygia_guttata
ENSELUG00000016262	-	100	91.703	ENSTRUG00000017953	nudt21	100	91.703	Takifugu_rubripes
ENSELUG00000016262	-	100	91.266	ENSTNIG00000009312	nudt21	100	91.266	Tetraodon_nigroviridis
ENSELUG00000016262	-	56	85.938	ENSTBEG00000007664	NUDT21	56	85.938	Tupaia_belangeri
ENSELUG00000016262	-	100	91.228	ENSTTRG00000013545	NUDT21	100	91.228	Tursiops_truncatus
ENSELUG00000016262	-	98	90.583	ENSUAMG00000016945	NUDT21	97	90.583	Ursus_americanus
ENSELUG00000016262	-	100	91.228	ENSUMAG00000001344	NUDT21	100	91.228	Ursus_maritimus
ENSELUG00000016262	-	100	90.789	ENSVPAG00000003701	NUDT21	100	90.789	Vicugna_pacos
ENSELUG00000016262	-	88	86.000	ENSVVUG00000013998	-	90	86.000	Vulpes_vulpes
ENSELUG00000016262	-	74	83.432	ENSVVUG00000021791	-	90	83.432	Vulpes_vulpes
ENSELUG00000016262	-	100	90.789	ENSXETG00000020017	nudt21	100	90.789	Xenopus_tropicalis
ENSELUG00000016262	-	100	92.140	ENSXMAG00000014172	nudt21	100	92.140	Xiphophorus_maculatus