EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000016517 (Gene tree)
Gene ID: 105029640
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 6594 bases
Position: chrAZJR03000461.1:434895-441488
Accession: 105029640
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000037045	PPR	PF01535.20	6.3e-16	1	2
ENSELUP00000037045	PPR	PF01535.20	6.3e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000039918	-	2795	XM_010903118	ENSELUP00000037045	737 (aa)	XP_010901420	UPI000577DAD9

Gene Model

Click here to download ENSELUG00000016517's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000016517's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000016517	ptcd1	82	46.945	ENSG00000248919	ATP5MF-PTCD1	78	46.955	Homo_sapiens
ENSELUG00000016517	ptcd1	82	46.945	ENSG00000106246	PTCD1	84	46.955	Homo_sapiens
ENSELUG00000016517	ptcd1	77	57.193	ENSAPOG00000010679	ptcd1	85	57.193	Acanthochromis_polyacanthus
ENSELUG00000016517	ptcd1	82	48.470	ENSAMEG00000006224	-	78	48.470	Ailuropoda_melanoleuca
ENSELUG00000016517	ptcd1	95	54.558	ENSACIG00000017861	ptcd1	98	54.558	Amphilophus_citrinellus
ENSELUG00000016517	ptcd1	79	56.507	ENSAOCG00000022617	ptcd1	83	56.507	Amphiprion_ocellaris
ENSELUG00000016517	ptcd1	86	55.937	ENSAOCG00000020741	-	86	55.937	Amphiprion_ocellaris
ENSELUG00000016517	ptcd1	97	52.072	ENSAPEG00000022632	ptcd1	95	52.072	Amphiprion_percula
ENSELUG00000016517	ptcd1	94	55.334	ENSATEG00000007016	ptcd1	92	55.334	Anabas_testudineus
ENSELUG00000016517	ptcd1	82	46.774	ENSAPLG00000006862	-	93	46.571	Anas_platyrhynchos
ENSELUG00000016517	ptcd1	85	43.634	ENSACAG00000012871	-	81	43.634	Anolis_carolinensis
ENSELUG00000016517	ptcd1	82	47.673	ENSANAG00000035790	-	86	47.680	Aotus_nancymaae
ENSELUG00000016517	ptcd1	94	54.688	ENSACLG00000002824	ptcd1	92	54.688	Astatotilapia_calliptera
ENSELUG00000016517	ptcd1	87	50.602	ENSAMXG00000037292	ptcd1	92	51.054	Astyanax_mexicanus
ENSELUG00000016517	ptcd1	90	45.161	ENSBTAG00000020440	-	79	45.015	Bos_taurus
ENSELUG00000016517	ptcd1	82	48.232	ENSCJAG00000015815	-	84	48.237	Callithrix_jacchus
ENSELUG00000016517	ptcd1	82	48.553	ENSCAFG00000015055	-	78	48.553	Canis_familiaris
ENSELUG00000016517	ptcd1	82	48.553	ENSCAFG00020014480	-	78	48.553	Canis_lupus_dingo
ENSELUG00000016517	ptcd1	85	47.819	ENSCHIG00000027000	-	85	47.664	Capra_hircus
ENSELUG00000016517	ptcd1	82	45.774	ENSTSYG00000029495	-	96	42.857	Carlito_syrichta
ENSELUG00000016517	ptcd1	82	46.764	ENSCAPG00000014660	-	90	46.774	Cavia_aperea
ENSELUG00000016517	ptcd1	82	47.411	ENSCPOG00000001780	-	96	44.023	Cavia_porcellus
ENSELUG00000016517	ptcd1	82	47.994	ENSCCAG00000034025	-	84	48.000	Cebus_capucinus
ENSELUG00000016517	ptcd1	82	48.232	ENSCATG00000040859	-	84	48.237	Cercocebus_atys
ENSELUG00000016517	ptcd1	94	44.803	ENSCLAG00000006354	-	99	43.826	Chinchilla_lanigera
ENSELUG00000016517	ptcd1	77	47.029	ENSCSAG00000017794	-	82	47.039	Chlorocebus_sabaeus
ENSELUG00000016517	ptcd1	83	46.688	ENSCPBG00000020866	-	84	46.688	Chrysemys_picta_bellii
ENSELUG00000016517	ptcd1	76	30.324	ENSCING00000007717	-	95	30.324	Ciona_intestinalis
ENSELUG00000016517	ptcd1	82	48.077	ENSCANG00000023441	-	84	48.077	Colobus_angolensis_palliatus
ENSELUG00000016517	ptcd1	83	46.955	ENSCGRG00001023686	Ptcd1	85	46.955	Cricetulus_griseus_chok1gshd
ENSELUG00000016517	ptcd1	83	46.955	ENSCGRG00000015031	Ptcd1	84	46.955	Cricetulus_griseus_crigri
ENSELUG00000016517	ptcd1	86	51.524	ENSCSEG00000002378	ptcd1	88	52.207	Cynoglossus_semilaevis
ENSELUG00000016517	ptcd1	89	54.532	ENSCVAG00000015826	ptcd1	89	54.532	Cyprinodon_variegatus
ENSELUG00000016517	ptcd1	85	55.217	ENSCVAG00000003621	ptcd1	90	55.217	Cyprinodon_variegatus
ENSELUG00000016517	ptcd1	87	49.619	ENSDARG00000076176	ptcd1	90	49.619	Danio_rerio
ENSELUG00000016517	ptcd1	82	47.596	ENSDNOG00000009957	-	83	47.428	Dasypus_novemcinctus
ENSELUG00000016517	ptcd1	82	46.278	ENSDORG00000000740	Ptcd1	92	44.277	Dipodomys_ordii
ENSELUG00000016517	ptcd1	85	38.815	ENSEBUG00000014515	ptcd1	99	38.240	Eptatretus_burgeri
ENSELUG00000016517	ptcd1	82	48.160	ENSEASG00005002480	-	83	47.749	Equus_asinus_asinus
ENSELUG00000016517	ptcd1	82	48.480	ENSECAG00000016617	-	83	48.325	Equus_caballus
ENSELUG00000016517	ptcd1	84	46.855	ENSFCAG00000015069	-	86	46.855	Felis_catus
ENSELUG00000016517	ptcd1	82	46.314	ENSFALG00000013803	-	84	46.142	Ficedula_albicollis
ENSELUG00000016517	ptcd1	82	47.428	ENSFDAG00000006393	-	87	46.923	Fukomys_damarensis
ENSELUG00000016517	ptcd1	78	56.207	ENSFHEG00000012491	ptcd1	95	56.207	Fundulus_heteroclitus
ENSELUG00000016517	ptcd1	85	54.134	ENSGMOG00000007639	ptcd1	98	54.134	Gadus_morhua
ENSELUG00000016517	ptcd1	82	45.981	ENSGALG00000004711	-	85	45.554	Gallus_gallus
ENSELUG00000016517	ptcd1	82	56.981	ENSGAFG00000013175	ptcd1	84	56.774	Gambusia_affinis
ENSELUG00000016517	ptcd1	89	57.014	ENSGACG00000016607	ptcd1	97	57.014	Gasterosteus_aculeatus
ENSELUG00000016517	ptcd1	79	46.053	ENSGAGG00000021832	-	86	46.053	Gopherus_agassizii
ENSELUG00000016517	ptcd1	82	47.428	ENSGGOG00000015123	-	84	47.436	Gorilla_gorilla
ENSELUG00000016517	ptcd1	94	54.585	ENSHBUG00000018275	ptcd1	91	54.585	Haplochromis_burtoni
ENSELUG00000016517	ptcd1	94	44.818	ENSHGLG00000017621	-	96	44.726	Heterocephalus_glaber_female
ENSELUG00000016517	ptcd1	94	44.818	ENSHGLG00100007218	-	96	44.726	Heterocephalus_glaber_male
ENSELUG00000016517	ptcd1	92	51.036	ENSHCOG00000010784	ptcd1	92	52.219	Hippocampus_comes
ENSELUG00000016517	ptcd1	90	45.109	ENSSTOG00000001682	-	91	45.109	Ictidomys_tridecemlineatus
ENSELUG00000016517	ptcd1	83	46.154	ENSJJAG00000000319	Ptcd1	88	45.997	Jaculus_jaculus
ENSELUG00000016517	ptcd1	87	56.355	ENSKMAG00000008708	ptcd1	87	56.968	Kryptolebias_marmoratus
ENSELUG00000016517	ptcd1	86	55.882	ENSLBEG00000008061	ptcd1	85	56.563	Labrus_bergylta
ENSELUG00000016517	ptcd1	88	44.511	ENSLACG00000011172	ptcd1	89	44.962	Latimeria_chalumnae
ENSELUG00000016517	ptcd1	83	53.110	ENSLOCG00000004833	ptcd1	93	51.118	Lepisosteus_oculatus
ENSELUG00000016517	ptcd1	84	46.395	ENSLAFG00000002588	-	86	46.395	Loxodonta_africana
ENSELUG00000016517	ptcd1	82	48.232	ENSMFAG00000041324	-	84	48.237	Macaca_fascicularis
ENSELUG00000016517	ptcd1	82	48.071	ENSMMUG00000030408	-	84	48.077	Macaca_mulatta
ENSELUG00000016517	ptcd1	82	48.148	ENSMNEG00000043786	-	84	48.154	Macaca_nemestrina
ENSELUG00000016517	ptcd1	82	35.362	ENSMLEG00000031179	-	81	37.213	Mandrillus_leucophaeus
ENSELUG00000016517	ptcd1	94	54.623	ENSMAMG00000007623	ptcd1	91	54.623	Mastacembelus_armatus
ENSELUG00000016517	ptcd1	94	54.545	ENSMZEG00005012722	ptcd1	92	54.545	Maylandia_zebra
ENSELUG00000016517	ptcd1	81	46.743	ENSMGAG00000004211	-	78	46.743	Meleagris_gallopavo
ENSELUG00000016517	ptcd1	94	42.441	ENSMICG00000017428	-	96	42.857	Microcebus_murinus
ENSELUG00000016517	ptcd1	99	52.708	ENSMMOG00000020243	ptcd1	94	56.832	Mola_mola
ENSELUG00000016517	ptcd1	83	45.907	ENSMODG00000001350	-	82	45.907	Monodelphis_domestica
ENSELUG00000016517	ptcd1	94	53.966	ENSMALG00000018442	ptcd1	91	53.966	Monopterus_albus
ENSELUG00000016517	ptcd1	82	48.065	MGP_CAROLIEiJ_G0028011	Ptcd1	85	48.065	Mus_caroli
ENSELUG00000016517	ptcd1	82	46.452	ENSMUSG00000029624	Ptcd1	85	47.258	Mus_musculus
ENSELUG00000016517	ptcd1	87	46.177	MGP_PahariEiJ_G0024580	Ptcd1	88	46.177	Mus_pahari
ENSELUG00000016517	ptcd1	82	46.290	MGP_SPRETEiJ_G0029012	Ptcd1	85	47.097	Mus_spretus
ENSELUG00000016517	ptcd1	85	47.656	ENSMPUG00000016518	-	85	47.731	Mustela_putorius_furo
ENSELUG00000016517	ptcd1	82	48.148	ENSMLUG00000010994	-	90	45.035	Myotis_lucifugus
ENSELUG00000016517	ptcd1	95	54.661	ENSNBRG00000010079	ptcd1	95	54.661	Neolamprologus_brichardi
ENSELUG00000016517	ptcd1	73	46.320	ENSNLEG00000011060	-	88	46.320	Nomascus_leucogenys
ENSELUG00000016517	ptcd1	83	45.455	ENSMEUG00000006930	-	86	45.455	Notamacropus_eugenii
ENSELUG00000016517	ptcd1	76	52.448	ENSOPRG00000013647	-	77	52.448	Ochotona_princeps
ENSELUG00000016517	ptcd1	81	56.860	ENSONIG00000003168	ptcd1	95	56.860	Oreochromis_niloticus
ENSELUG00000016517	ptcd1	87	42.550	ENSOANG00000007728	-	84	42.129	Ornithorhynchus_anatinus
ENSELUG00000016517	ptcd1	82	47.480	ENSOCUG00000010584	-	82	47.488	Oryctolagus_cuniculus
ENSELUG00000016517	ptcd1	82	57.921	ENSORLG00000009275	ptcd1	84	57.921	Oryzias_latipes
ENSELUG00000016517	ptcd1	86	55.625	ENSORLG00020000988	ptcd1	88	55.625	Oryzias_latipes_hni
ENSELUG00000016517	ptcd1	82	57.331	ENSORLG00015010557	ptcd1	84	57.331	Oryzias_latipes_hsok
ENSELUG00000016517	ptcd1	90	56.587	ENSOMEG00000020627	ptcd1	95	56.587	Oryzias_melastigma
ENSELUG00000016517	ptcd1	84	45.141	ENSOGAG00000010877	-	87	45.141	Otolemur_garnettii
ENSELUG00000016517	ptcd1	85	43.975	ENSOARG00000018676	-	86	43.818	Ovis_aries
ENSELUG00000016517	ptcd1	82	46.785	ENSPPAG00000036024	-	92	43.670	Pan_paniscus
ENSELUG00000016517	ptcd1	84	46.614	ENSPPRG00000003478	-	86	46.614	Panthera_pardus
ENSELUG00000016517	ptcd1	82	46.945	ENSPTRG00000019452	-	92	43.812	Pan_troglodytes
ENSELUG00000016517	ptcd1	82	48.392	ENSPANG00000016730	-	84	48.397	Papio_anubis
ENSELUG00000016517	ptcd1	90	48.261	ENSPKIG00000014215	ptcd1	93	48.336	Paramormyrops_kingsleyae
ENSELUG00000016517	ptcd1	82	45.000	ENSPSIG00000011184	-	99	46.042	Pelodiscus_sinensis
ENSELUG00000016517	ptcd1	72	39.344	ENSPMAG00000009667	ptcd1	99	39.344	Petromyzon_marinus
ENSELUG00000016517	ptcd1	83	45.455	ENSPCIG00000024778	-	83	45.455	Phascolarctos_cinereus
ENSELUG00000016517	ptcd1	82	57.861	ENSPFOG00000004458	ptcd1	84	57.416	Poecilia_formosa
ENSELUG00000016517	ptcd1	85	56.986	ENSPLAG00000011051	ptcd1	92	54.758	Poecilia_latipinna
ENSELUG00000016517	ptcd1	82	58.509	ENSPMEG00000020547	ptcd1	84	58.054	Poecilia_mexicana
ENSELUG00000016517	ptcd1	90	54.627	ENSPREG00000000059	ptcd1	97	52.727	Poecilia_reticulata
ENSELUG00000016517	ptcd1	82	46.935	ENSPPYG00000017377	-	89	46.935	Pongo_abelii
ENSELUG00000016517	ptcd1	72	60.000	ENSPCAG00000001852	-	80	60.000	Procavia_capensis
ENSELUG00000016517	ptcd1	82	47.496	ENSPCOG00000018596	-	84	47.826	Propithecus_coquereli
ENSELUG00000016517	ptcd1	58	51.212	ENSPVAG00000007529	-	66	51.212	Pteropus_vampyrus
ENSELUG00000016517	ptcd1	81	59.504	ENSPNYG00000019993	ptcd1	80	59.504	Pundamilia_nyererei
ENSELUG00000016517	ptcd1	87	50.681	ENSPNAG00000014931	ptcd1	90	52.566	Pygocentrus_nattereri
ENSELUG00000016517	ptcd1	83	47.360	ENSRNOG00000000987	Ptcd1	91	46.412	Rattus_norvegicus
ENSELUG00000016517	ptcd1	82	47.923	ENSRBIG00000043393	-	84	47.923	Rhinopithecus_bieti
ENSELUG00000016517	ptcd1	82	47.771	ENSRROG00000036420	-	84	47.771	Rhinopithecus_roxellana
ENSELUG00000016517	ptcd1	82	48.232	ENSSBOG00000024114	-	84	48.237	Saimiri_boliviensis_boliviensis
ENSELUG00000016517	ptcd1	91	42.857	ENSSHAG00000011376	-	97	42.857	Sarcophilus_harrisii
ENSELUG00000016517	ptcd1	90	50.520	ENSSFOG00015007909	ptcd1	87	50.817	Scleropages_formosus
ENSELUG00000016517	ptcd1	87	53.905	ENSSMAG00000000218	ptcd1	96	54.518	Scophthalmus_maximus
ENSELUG00000016517	ptcd1	97	54.036	ENSSDUG00000015671	ptcd1	98	54.036	Seriola_dumerili
ENSELUG00000016517	ptcd1	98	53.206	ENSSLDG00000014261	ptcd1	98	54.309	Seriola_lalandi_dorsalis
ENSELUG00000016517	ptcd1	85	45.110	ENSSPUG00000003540	-	85	44.741	Sphenodon_punctatus
ENSELUG00000016517	ptcd1	94	54.738	ENSSPAG00000011049	ptcd1	91	55.021	Stegastes_partitus
ENSELUG00000016517	ptcd1	82	47.573	ENSSSCG00000007622	-	89	47.581	Sus_scrofa
ENSELUG00000016517	ptcd1	83	44.976	ENSTGUG00000007563	-	97	45.136	Taeniopygia_guttata
ENSELUG00000016517	ptcd1	85	58.254	ENSTRUG00000013471	ptcd1	85	57.430	Takifugu_rubripes
ENSELUG00000016517	ptcd1	93	53.690	ENSTNIG00000008271	ptcd1	95	53.690	Tetraodon_nigroviridis
ENSELUG00000016517	ptcd1	86	45.176	ENSTBEG00000011021	-	88	45.176	Tupaia_belangeri
ENSELUG00000016517	ptcd1	86	45.152	ENSTTRG00000003006	-	90	45.152	Tursiops_truncatus
ENSELUG00000016517	ptcd1	82	48.148	ENSUAMG00000008049	-	84	48.148	Ursus_americanus
ENSELUG00000016517	ptcd1	84	47.724	ENSVVUG00000008836	-	86	47.724	Vulpes_vulpes
ENSELUG00000016517	ptcd1	89	43.731	ENSXETG00000009891	ptcd1	94	42.982	Xenopus_tropicalis
ENSELUG00000016517	ptcd1	84	56.556	ENSXMAG00000015540	ptcd1	87	56.124	Xiphophorus_maculatus