EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000016683 (Gene tree)
Gene ID: 105019178
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 9153 bases
Position: chrLG03:21043870-21053022
Accession: 105019178
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000016934	RRM_1	PF00076.22	8.3e-26	1	2
ENSELUP00000016934	RRM_1	PF00076.22	8.3e-26	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000026410	-	1872	XM_010885142	ENSELUP00000016934	324 (aa)	XP_010883444	UPI00057719FA

Gene Model

Click here to download ENSELUG00000016683's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000016683's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000016683	trnau1apb	95	46.129	ENSELUG00000017686	trnau1apa	94	44.785
ENSELUG00000016683	trnau1apb	95	57.292	ENSELUG00000022790	-	56	56.410

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000016683	trnau1apb	99	60.615	ENSAPOG00000010086	trnau1apb	100	60.479	Acanthochromis_polyacanthus
ENSELUG00000016683	trnau1apb	99	66.265	ENSACIG00000001863	trnau1apb	100	63.526	Amphilophus_citrinellus
ENSELUG00000016683	trnau1apb	99	66.082	ENSAOCG00000011891	trnau1apb	100	64.035	Amphiprion_ocellaris
ENSELUG00000016683	trnau1apb	99	62.963	ENSAPEG00000008029	trnau1apb	100	65.089	Amphiprion_percula
ENSELUG00000016683	trnau1apb	99	66.667	ENSATEG00000002196	trnau1apb	100	64.327	Anabas_testudineus
ENSELUG00000016683	trnau1apb	99	65.964	ENSACLG00000003016	trnau1apb	100	62.952	Astatotilapia_calliptera
ENSELUG00000016683	trnau1apb	98	76.415	ENSAMXG00000001805	trnau1apb	99	74.843	Astyanax_mexicanus
ENSELUG00000016683	trnau1apb	99	61.383	ENSCSEG00000018215	trnau1apb	100	60.933	Cynoglossus_semilaevis
ENSELUG00000016683	trnau1apb	94	58.258	ENSCVAG00000017866	trnau1apb	65	71.362	Cyprinodon_variegatus
ENSELUG00000016683	trnau1apb	100	77.778	ENSDARG00000056475	trnau1apb	100	73.765	Danio_rerio
ENSELUG00000016683	trnau1apb	99	61.272	ENSFHEG00000001267	trnau1apb	99	60.405	Fundulus_heteroclitus
ENSELUG00000016683	trnau1apb	98	64.759	ENSGMOG00000001160	trnau1apb	69	75.758	Gadus_morhua
ENSELUG00000016683	trnau1apb	56	81.768	ENSGAFG00000006770	trnau1apb	100	60.550	Gambusia_affinis
ENSELUG00000016683	trnau1apb	99	64.970	ENSGACG00000014944	trnau1apb	100	63.964	Gasterosteus_aculeatus
ENSELUG00000016683	trnau1apb	69	47.321	ENSGAGG00000022384	-	78	44.643	Gopherus_agassizii
ENSELUG00000016683	trnau1apb	99	65.982	ENSHBUG00000018944	trnau1apb	99	62.757	Haplochromis_burtoni
ENSELUG00000016683	trnau1apb	69	73.707	ENSHCOG00000011350	trnau1apb	73	71.179	Hippocampus_comes
ENSELUG00000016683	trnau1apb	98	79.874	ENSIPUG00000008843	tsp1l	99	78.616	Ictalurus_punctatus
ENSELUG00000016683	trnau1apb	66	74.091	ENSKMAG00000010082	trnau1apb	99	60.058	Kryptolebias_marmoratus
ENSELUG00000016683	trnau1apb	99	64.392	ENSLBEG00000020480	trnau1apb	100	63.205	Labrus_bergylta
ENSELUG00000016683	trnau1apb	99	64.198	ENSLOCG00000013175	trnau1apb	99	61.728	Lepisosteus_oculatus
ENSELUG00000016683	trnau1apb	99	65.294	ENSMAMG00000012192	trnau1apb	100	64.118	Mastacembelus_armatus
ENSELUG00000016683	trnau1apb	99	65.982	ENSMZEG00005014852	trnau1apb	99	62.757	Maylandia_zebra
ENSELUG00000016683	trnau1apb	70	45.175	ENSMGAG00000003234	-	100	43.478	Meleagris_gallopavo
ENSELUG00000016683	trnau1apb	96	55.556	ENSMMOG00000021521	trnau1apb	100	52.770	Mola_mola
ENSELUG00000016683	trnau1apb	55	84.358	ENSMALG00000003772	trnau1apb	60	82.609	Monopterus_albus
ENSELUG00000016683	trnau1apb	97	66.770	ENSNBRG00000000751	trnau1apb	99	63.043	Neolamprologus_brichardi
ENSELUG00000016683	trnau1apb	98	62.883	ENSONIG00000016639	trnau1apb	100	59.202	Oreochromis_niloticus
ENSELUG00000016683	trnau1apb	62	78.607	ENSORLG00000013265	trnau1apb	99	62.717	Oryzias_latipes
ENSELUG00000016683	trnau1apb	99	64.244	ENSORLG00020004464	trnau1apb	99	63.081	Oryzias_latipes_hni
ENSELUG00000016683	trnau1apb	99	64.244	ENSORLG00015021098	trnau1apb	99	63.081	Oryzias_latipes_hsok
ENSELUG00000016683	trnau1apb	62	78.500	ENSOMEG00000016531	trnau1apb	99	62.428	Oryzias_melastigma
ENSELUG00000016683	trnau1apb	100	73.193	ENSPKIG00000007995	trnau1apb	100	73.795	Paramormyrops_kingsleyae
ENSELUG00000016683	trnau1apb	69	47.321	ENSPSIG00000004189	-	78	44.248	Pelodiscus_sinensis
ENSELUG00000016683	trnau1apb	99	65.350	ENSPFOG00000003938	trnau1apb	100	64.634	Poecilia_formosa
ENSELUG00000016683	trnau1apb	99	63.610	ENSPLAG00000015480	trnau1apb	99	62.139	Poecilia_latipinna
ENSELUG00000016683	trnau1apb	99	63.610	ENSPMEG00000012743	trnau1apb	99	62.139	Poecilia_mexicana
ENSELUG00000016683	trnau1apb	99	63.112	ENSPREG00000015035	trnau1apb	99	61.272	Poecilia_reticulata
ENSELUG00000016683	trnau1apb	99	63.554	ENSPNYG00000012127	trnau1apb	100	60.542	Pundamilia_nyererei
ENSELUG00000016683	trnau1apb	100	79.321	ENSPNAG00000019138	trnau1apb	98	79.245	Pygocentrus_nattereri
ENSELUG00000016683	trnau1apb	98	75.758	ENSSFOG00015014158	trnau1apb	99	76.292	Scleropages_formosus
ENSELUG00000016683	trnau1apb	98	64.095	ENSSMAG00000001745	trnau1apb	100	62.908	Scophthalmus_maximus
ENSELUG00000016683	trnau1apb	99	65.103	ENSSDUG00000011109	trnau1apb	99	64.223	Seriola_dumerili
ENSELUG00000016683	trnau1apb	99	65.103	ENSSLDG00000012947	trnau1apb	99	64.223	Seriola_lalandi_dorsalis
ENSELUG00000016683	trnau1apb	99	65.116	ENSSPAG00000006917	trnau1apb	100	63.743	Stegastes_partitus
ENSELUG00000016683	trnau1apb	99	62.682	ENSTRUG00000008608	trnau1apb	99	59.942	Takifugu_rubripes
ENSELUG00000016683	trnau1apb	98	58.125	ENSTNIG00000000916	trnau1apb	65	76.684	Tetraodon_nigroviridis
ENSELUG00000016683	trnau1apb	94	57.516	ENSXCOG00000007974	trnau1apb	60	68.780	Xiphophorus_couchianus
ENSELUG00000016683	trnau1apb	99	63.689	ENSXMAG00000029918	trnau1apb	99	61.850	Xiphophorus_maculatus