EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000017178 (Gene tree)
Gene ID: 105012898
Gene Symbol: alyref
Alias: tho4|thoc4|zgc:171753
Full Name: THO complex subunit 4
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 3141 bases
Position: chrLG11:29191994-29195134
Accession: 105012898
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000017489	RRM_1	PF00076.22	2.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000027084	-	1254	XM_010874040	ENSELUP00000017489	270 (aa)	XP_010872342	UPI0005770159

Gene Model

Click here to download ENSELUG00000017178's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03013	RNA transport	KEGG
els03015	mRNA surveillance pathway	KEGG
els03040	Spliceosome	KEGG
els05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000017178's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000017178	alyref	100	63.121	ENSELUG00000008849	-	100	61.724

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000017178	alyref	100	51.786	ENSAPOG00000000183	-	100	51.636	Acanthochromis_polyacanthus
ENSELUG00000017178	alyref	99	70.073	ENSACIG00000006351	alyref	98	69.091	Amphilophus_citrinellus
ENSELUG00000017178	alyref	100	51.379	ENSACIG00000020351	-	100	52.431	Amphilophus_citrinellus
ENSELUG00000017178	alyref	100	53.047	ENSAOCG00000019305	-	100	51.786	Amphiprion_ocellaris
ENSELUG00000017178	alyref	100	68.953	ENSAOCG00000014012	alyref	100	75.000	Amphiprion_ocellaris
ENSELUG00000017178	alyref	100	68.953	ENSAPEG00000014603	alyref	100	75.000	Amphiprion_percula
ENSELUG00000017178	alyref	100	55.556	ENSAPEG00000013527	-	100	51.429	Amphiprion_percula
ENSELUG00000017178	alyref	100	73.665	ENSATEG00000004307	alyref	100	75.269	Anabas_testudineus
ENSELUG00000017178	alyref	100	55.797	ENSATEG00000000382	-	100	52.708	Anabas_testudineus
ENSELUG00000017178	alyref	50	73.333	ENSAPLG00000014745	-	100	75.362	Anas_platyrhynchos
ENSELUG00000017178	alyref	100	67.266	ENSACLG00000008432	alyref	100	71.377	Astatotilapia_calliptera
ENSELUG00000017178	alyref	100	53.929	ENSACLG00000010184	-	100	54.448	Astatotilapia_calliptera
ENSELUG00000017178	alyref	100	71.530	ENSAMXG00000007359	alyref	100	75.714	Astyanax_mexicanus
ENSELUG00000017178	alyref	99	49.097	ENSCING00000013568	-	99	46.127	Ciona_intestinalis
ENSELUG00000017178	alyref	99	48.897	ENSCSAVG00000003324	-	99	45.907	Ciona_savignyi
ENSELUG00000017178	alyref	100	71.273	ENSCSEG00000017800	alyref	100	72.364	Cynoglossus_semilaevis
ENSELUG00000017178	alyref	100	49.819	ENSCVAG00000007789	-	100	45.652	Cyprinodon_variegatus
ENSELUG00000017178	alyref	100	72.426	ENSCVAG00000014869	alyref	100	73.897	Cyprinodon_variegatus
ENSELUG00000017178	alyref	100	75.887	ENSDARG00000077732	alyref	100	77.143	Danio_rerio
ENSELUG00000017178	alyref	99	46.182	FBgn0010774	Ref1	73	48.020	Drosophila_melanogaster
ENSELUG00000017178	alyref	99	52.985	ENSEBUG00000008253	alyref	95	51.301	Eptatretus_burgeri
ENSELUG00000017178	alyref	70	47.716	ENSEBUG00000006305	alyref	100	39.209	Eptatretus_burgeri
ENSELUG00000017178	alyref	58	77.215	ENSFALG00000011923	-	96	75.974	Ficedula_albicollis
ENSELUG00000017178	alyref	100	48.551	ENSFHEG00000004698	-	100	46.931	Fundulus_heteroclitus
ENSELUG00000017178	alyref	100	76.103	ENSFHEG00000019426	alyref	100	78.309	Fundulus_heteroclitus
ENSELUG00000017178	alyref	100	72.325	ENSGMOG00000009882	alyref	100	70.111	Gadus_morhua
ENSELUG00000017178	alyref	68	60.000	ENSGMOG00000013122	-	100	59.375	Gadus_morhua
ENSELUG00000017178	alyref	100	48.364	ENSGAFG00000007573	-	100	45.985	Gambusia_affinis
ENSELUG00000017178	alyref	100	72.527	ENSGAFG00000006014	alyref	100	76.557	Gambusia_affinis
ENSELUG00000017178	alyref	100	54.965	ENSHBUG00000001454	-	100	52.721	Haplochromis_burtoni
ENSELUG00000017178	alyref	100	67.266	ENSHBUG00000020196	alyref	100	71.377	Haplochromis_burtoni
ENSELUG00000017178	alyref	99	49.821	ENSHCOG00000012825	-	94	49.077	Hippocampus_comes
ENSELUG00000017178	alyref	100	76.753	ENSIPUG00000009469	alyref	100	76.727	Ictalurus_punctatus
ENSELUG00000017178	alyref	73	66.162	ENSSTOG00000016570	-	97	65.482	Ictidomys_tridecemlineatus
ENSELUG00000017178	alyref	100	73.551	ENSKMAG00000008912	alyref	100	78.261	Kryptolebias_marmoratus
ENSELUG00000017178	alyref	99	52.381	ENSKMAG00000006462	-	98	50.185	Kryptolebias_marmoratus
ENSELUG00000017178	alyref	100	71.119	ENSLBEG00000023118	alyref	90	75.725	Labrus_bergylta
ENSELUG00000017178	alyref	100	50.000	ENSLBEG00000005387	-	100	51.724	Labrus_bergylta
ENSELUG00000017178	alyref	99	49.819	ENSLBEG00000012930	-	99	48.000	Labrus_bergylta
ENSELUG00000017178	alyref	77	75.349	ENSLOCG00000013879	alyref	89	73.059	Lepisosteus_oculatus
ENSELUG00000017178	alyref	100	72.302	ENSMAMG00000003034	alyref	100	74.368	Mastacembelus_armatus
ENSELUG00000017178	alyref	100	50.000	ENSMAMG00000005464	-	100	50.000	Mastacembelus_armatus
ENSELUG00000017178	alyref	100	67.266	ENSMZEG00005008639	alyref	100	71.377	Maylandia_zebra
ENSELUG00000017178	alyref	100	53.929	ENSMZEG00005012096	-	100	54.093	Maylandia_zebra
ENSELUG00000017178	alyref	100	75.547	ENSMMOG00000012458	alyref	97	76.190	Mola_mola
ENSELUG00000017178	alyref	99	50.186	ENSMMOG00000007032	-	98	47.778	Mola_mola
ENSELUG00000017178	alyref	100	51.220	ENSMALG00000006054	-	100	50.178	Monopterus_albus
ENSELUG00000017178	alyref	98	57.463	ENSMLUG00000022178	-	98	55.431	Myotis_lucifugus
ENSELUG00000017178	alyref	98	55.755	ENSMLUG00000022467	-	98	55.235	Myotis_lucifugus
ENSELUG00000017178	alyref	98	55.797	ENSMLUG00000028605	-	98	55.636	Myotis_lucifugus
ENSELUG00000017178	alyref	100	61.511	ENSMLUG00000014372	-	100	58.065	Myotis_lucifugus
ENSELUG00000017178	alyref	98	55.036	ENSMLUG00000009247	-	98	55.474	Myotis_lucifugus
ENSELUG00000017178	alyref	98	56.228	ENSMLUG00000030671	-	98	56.827	Myotis_lucifugus
ENSELUG00000017178	alyref	100	60.357	ENSMLUG00000004098	-	100	57.348	Myotis_lucifugus
ENSELUG00000017178	alyref	100	59.075	ENSMLUG00000006521	-	100	57.706	Myotis_lucifugus
ENSELUG00000017178	alyref	100	67.037	ENSNGAG00000022014	-	100	65.556	Nannospalax_galili
ENSELUG00000017178	alyref	100	67.986	ENSNBRG00000001747	alyref	100	71.377	Neolamprologus_brichardi
ENSELUG00000017178	alyref	100	54.676	ENSNBRG00000017460	-	100	54.839	Neolamprologus_brichardi
ENSELUG00000017178	alyref	100	56.364	ENSONIG00000003296	-	100	56.318	Oreochromis_niloticus
ENSELUG00000017178	alyref	100	70.463	ENSONIG00000019434	alyref	100	73.571	Oreochromis_niloticus
ENSELUG00000017178	alyref	99	42.453	ENSORLG00000001620	-	57	50.235	Oryzias_latipes
ENSELUG00000017178	alyref	99	51.838	ENSORLG00020015673	-	98	48.097	Oryzias_latipes_hni
ENSELUG00000017178	alyref	100	72.364	ENSORLG00020011942	alyref	100	74.265	Oryzias_latipes_hni
ENSELUG00000017178	alyref	99	50.923	ENSORLG00015015143	-	98	48.443	Oryzias_latipes_hsok
ENSELUG00000017178	alyref	100	70.909	ENSORLG00015022664	alyref	100	74.632	Oryzias_latipes_hsok
ENSELUG00000017178	alyref	99	50.741	ENSOMEG00000007158	-	97	46.739	Oryzias_melastigma
ENSELUG00000017178	alyref	100	71.795	ENSOMEG00000019176	alyref	100	79.121	Oryzias_melastigma
ENSELUG00000017178	alyref	68	78.804	ENSPPAG00000036403	-	73	72.727	Pan_paniscus
ENSELUG00000017178	alyref	100	75.185	ENSPKIG00000007070	alyref	100	72.593	Paramormyrops_kingsleyae
ENSELUG00000017178	alyref	99	76.384	ENSPKIG00000006233	-	81	71.587	Paramormyrops_kingsleyae
ENSELUG00000017178	alyref	99	74.632	ENSPMGG00000016600	alyref	91	71.273	Periophthalmus_magnuspinnatus
ENSELUG00000017178	alyref	73	50.254	ENSPMGG00000012994	-	97	48.958	Periophthalmus_magnuspinnatus
ENSELUG00000017178	alyref	100	67.407	ENSPEMG00000016628	-	100	64.444	Peromyscus_maniculatus_bairdii
ENSELUG00000017178	alyref	100	47.826	ENSPFOG00000017094	-	100	45.126	Poecilia_formosa
ENSELUG00000017178	alyref	100	70.182	ENSPFOG00000022825	alyref	99	72.993	Poecilia_formosa
ENSELUG00000017178	alyref	100	70.073	ENSPLAG00000006948	alyref	100	73.260	Poecilia_latipinna
ENSELUG00000017178	alyref	100	47.826	ENSPLAG00000014380	-	100	45.126	Poecilia_latipinna
ENSELUG00000017178	alyref	100	70.182	ENSPMEG00000003547	alyref	100	72.993	Poecilia_mexicana
ENSELUG00000017178	alyref	100	47.826	ENSPMEG00000023039	-	100	45.126	Poecilia_mexicana
ENSELUG00000017178	alyref	100	50.362	ENSPREG00000003649	-	100	47.970	Poecilia_reticulata
ENSELUG00000017178	alyref	100	69.963	ENSPREG00000015795	alyref	100	73.626	Poecilia_reticulata
ENSELUG00000017178	alyref	100	67.266	ENSPNYG00000017498	alyref	100	71.377	Pundamilia_nyererei
ENSELUG00000017178	alyref	99	52.364	ENSPNYG00000002879	-	98	52.347	Pundamilia_nyererei
ENSELUG00000017178	alyref	100	75.547	ENSPNAG00000002531	alyref	100	71.898	Pygocentrus_nattereri
ENSELUG00000017178	alyref	79	71.364	ENSSBOG00000030924	-	94	70.335	Saimiri_boliviensis_boliviensis
ENSELUG00000017178	alyref	99	58.519	ENSSHAG00000012866	-	99	52.593	Sarcophilus_harrisii
ENSELUG00000017178	alyref	99	56.522	ENSSHAG00000000609	-	99	55.926	Sarcophilus_harrisii
ENSELUG00000017178	alyref	69	81.183	ENSSFOG00015003678	alyref	83	76.757	Scleropages_formosus
ENSELUG00000017178	alyref	77	78.744	ENSSFOG00015003923	alyref	73	80.676	Scleropages_formosus
ENSELUG00000017178	alyref	100	69.455	ENSSMAG00000009283	alyref	100	76.277	Scophthalmus_maximus
ENSELUG00000017178	alyref	100	50.704	ENSSMAG00000011169	-	100	54.229	Scophthalmus_maximus
ENSELUG00000017178	alyref	100	68.231	ENSSDUG00000016158	alyref	100	74.275	Seriola_dumerili
ENSELUG00000017178	alyref	100	69.424	ENSSLDG00000017803	alyref	100	75.812	Seriola_lalandi_dorsalis
ENSELUG00000017178	alyref	99	53.763	ENSSPAG00000017028	-	96	54.044	Stegastes_partitus
ENSELUG00000017178	alyref	100	51.056	ENSTRUG00000003051	-	100	51.254	Takifugu_rubripes
ENSELUG00000017178	alyref	100	71.223	ENSTNIG00000011595	alyref	100	64.982	Tetraodon_nigroviridis
ENSELUG00000017178	alyref	100	51.986	ENSTNIG00000014136	-	100	49.084	Tetraodon_nigroviridis
ENSELUG00000017178	alyref	70	77.249	ENSVVUG00000000272	-	82	76.471	Vulpes_vulpes
ENSELUG00000017178	alyref	100	71.062	ENSXCOG00000018047	alyref	99	76.557	Xiphophorus_couchianus
ENSELUG00000017178	alyref	100	71.062	ENSXMAG00000012218	alyref	99	76.557	Xiphophorus_maculatus
ENSELUG00000017178	alyref	100	49.455	ENSXMAG00000018086	-	100	46.209	Xiphophorus_maculatus