EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000017677 (Gene tree)
Gene ID: 105020464
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 20675 bases
Position: chrLG23:19556125-19576799
Accession: 105020464
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000017986	ResIII	PF04851.15	3.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000027786	-	6138	XM_013140296	ENSELUP00000018034	1821 (aa)	XP_012995750	UPI000661B916
ENSELUT00000027722	-	4905	-	ENSELUP00000017986	1634 (aa)	-	-

Gene Model

Click here to download ENSELUG00000017677's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000017677's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000017677	chd1	90	57.508	ENSELUG00000017981	chd2	92	57.747

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000017677	chd1	93	78.115	ENSG00000153922	CHD1	96	80.734	Homo_sapiens
ENSELUG00000017677	chd1	69	89.567	ENSAPOG00000005764	chd1	96	89.488	Acanthochromis_polyacanthus
ENSELUG00000017677	chd1	93	83.081	ENSAOCG00000023105	chd1	94	83.278	Amphiprion_ocellaris
ENSELUG00000017677	chd1	93	84.342	ENSAPEG00000013544	chd1	94	84.539	Amphiprion_percula
ENSELUG00000017677	chd1	93	84.197	ENSATEG00000010676	chd1	91	84.469	Anabas_testudineus
ENSELUG00000017677	chd1	74	88.871	ENSAMXG00000010843	chd1	93	88.871	Astyanax_mexicanus
ENSELUG00000017677	chd1	93	77.986	ENSCATG00000032035	CHD1	90	77.907	Cercocebus_atys
ENSELUG00000017677	chd1	93	77.921	ENSCSAG00000015339	CHD1	88	77.907	Chlorocebus_sabaeus
ENSELUG00000017677	chd1	54	77.175	ENSCPBG00000015831	CHD1	86	77.627	Chrysemys_picta_bellii
ENSELUG00000017677	chd1	93	75.985	ENSCANG00000036916	CHD1	89	75.775	Colobus_angolensis_palliatus
ENSELUG00000017677	chd1	93	77.534	ENSCGRG00001023943	Chd1	89	77.778	Cricetulus_griseus_chok1gshd
ENSELUG00000017677	chd1	93	77.534	ENSCGRG00000008652	Chd1	89	77.778	Cricetulus_griseus_crigri
ENSELUG00000017677	chd1	93	81.747	ENSCSEG00000009553	chd1	95	81.878	Cynoglossus_semilaevis
ENSELUG00000017677	chd1	75	81.803	ENSEASG00005016110	CHD1	97	74.001	Equus_asinus_asinus
ENSELUG00000017677	chd1	75	85.423	ENSFHEG00000021164	chd1	89	85.423	Fundulus_heteroclitus
ENSELUG00000017677	chd1	93	87.604	ENSGMOG00000001537	chd1	90	83.438	Gadus_morhua
ENSELUG00000017677	chd1	91	78.808	ENSGALG00000031327	-	93	77.369	Gallus_gallus
ENSELUG00000017677	chd1	79	88.633	ENSGAFG00000019880	chd1	86	88.633	Gambusia_affinis
ENSELUG00000017677	chd1	93	74.887	ENSGGOG00000011463	CHD1	89	74.775	Gorilla_gorilla
ENSELUG00000017677	chd1	94	82.668	ENSHCOG00000014222	chd1	95	80.645	Hippocampus_comes
ENSELUG00000017677	chd1	90	86.649	ENSIPUG00000001369	chd1	95	85.518	Ictalurus_punctatus
ENSELUG00000017677	chd1	54	81.038	ENSLAFG00000023183	CHD1	82	80.493	Loxodonta_africana
ENSELUG00000017677	chd1	93	77.921	ENSMFAG00000031226	CHD1	89	77.907	Macaca_fascicularis
ENSELUG00000017677	chd1	75	81.722	ENSMMUG00000014090	CHD1	86	81.442	Macaca_mulatta
ENSELUG00000017677	chd1	93	77.921	ENSMNEG00000045073	CHD1	89	77.907	Macaca_nemestrina
ENSELUG00000017677	chd1	93	74.241	ENSMLEG00000041096	CHD1	89	74.160	Mandrillus_leucophaeus
ENSELUG00000017677	chd1	75	87.205	ENSMZEG00005010957	chd1	92	87.123	Maylandia_zebra
ENSELUG00000017677	chd1	93	75.016	ENSMOCG00000019121	Chd1	88	76.413	Microtus_ochrogaster
ENSELUG00000017677	chd1	75	87.267	ENSMALG00000013317	chd1	86	87.267	Monopterus_albus
ENSELUG00000017677	chd1	93	77.569	MGP_CAROLIEiJ_G0021099	Chd1	89	77.907	Mus_caroli
ENSELUG00000017677	chd1	93	77.634	ENSMUSG00000023852	Chd1	89	77.972	Mus_musculus
ENSELUG00000017677	chd1	93	77.137	MGP_PahariEiJ_G0023414	Chd1	89	78.058	Mus_pahari
ENSELUG00000017677	chd1	98	78.921	ENSNBRG00000006860	chd1	96	78.784	Neolamprologus_brichardi
ENSELUG00000017677	chd1	93	76.139	ENSNLEG00000014493	CHD1	89	76.361	Nomascus_leucogenys
ENSELUG00000017677	chd1	93	78.544	ENSOANG00000004891	CHD1	100	80.632	Ornithorhynchus_anatinus
ENSELUG00000017677	chd1	55	84.400	ENSORLG00015016725	chd1	83	84.175	Oryzias_latipes_hsok
ENSELUG00000017677	chd1	93	77.314	ENSPPAG00000043367	CHD1	90	77.535	Pan_paniscus
ENSELUG00000017677	chd1	93	77.986	ENSPTRG00000017103	CHD1	89	78.208	Pan_troglodytes
ENSELUG00000017677	chd1	93	77.921	ENSPANG00000006387	CHD1	89	77.907	Papio_anubis
ENSELUG00000017677	chd1	93	78.079	ENSPKIG00000024719	chd1	92	79.560	Paramormyrops_kingsleyae
ENSELUG00000017677	chd1	75	87.317	ENSPMGG00000005785	chd1	92	87.236	Periophthalmus_magnuspinnatus
ENSELUG00000017677	chd1	93	77.405	ENSPEMG00000015939	Chd1	89	77.518	Peromyscus_maniculatus_bairdii
ENSELUG00000017677	chd1	93	81.067	ENSPREG00000004209	chd1	90	81.067	Poecilia_reticulata
ENSELUG00000017677	chd1	75	81.057	ENSRNOG00000014434	Chd1	86	80.813	Rattus_norvegicus
ENSELUG00000017677	chd1	93	76.147	ENSRBIG00000044325	CHD1	89	76.197	Rhinopithecus_bieti
ENSELUG00000017677	chd1	93	77.778	ENSRROG00000001726	CHD1	90	77.893	Rhinopithecus_roxellana
ENSELUG00000017677	chd1	75	86.748	ENSSFOG00015007161	chd1	91	86.780	Scleropages_formosus
ENSELUG00000017677	chd1	75	87.967	ENSSDUG00000018314	chd1	86	87.886	Seriola_dumerili
ENSELUG00000017677	chd1	59	82.541	ENSSLDG00000017244	chd1	93	82.523	Seriola_lalandi_dorsalis
ENSELUG00000017677	chd1	75	89.043	ENSSPAG00000007024	chd1	86	88.744	Stegastes_partitus
ENSELUG00000017677	chd1	79	82.855	ENSSSCG00000014177	CHD1	87	82.585	Sus_scrofa
ENSELUG00000017677	chd1	93	81.042	ENSTRUG00000010282	chd1	89	81.173	Takifugu_rubripes
ENSELUG00000017677	chd1	65	88.701	ENSTNIG00000007101	chd1	86	86.413	Tetraodon_nigroviridis
ENSELUG00000017677	chd1	93	78.201	ENSXCOG00000017184	chd1	90	78.113	Xiphophorus_couchianus
ENSELUG00000017677	chd1	74	84.946	ENSXMAG00000014538	chd1	88	84.946	Xiphophorus_maculatus