EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000017904 (Gene tree)
Gene ID: 105012335
Gene Symbol: ddx39b
Alias: bat1|zgc:63773
Full Name: spliceosome RNA helicase DDX39B
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 9806 bases
Position: chrLG10:23566264-23576069
Accession: 105012335
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000018380	ResIII	PF04851.15	2.5e-06	1	1
ENSELUP00000038114	ResIII	PF04851.15	2.7e-06	1	1
ENSELUP00000018380	DEAD	PF00270.29	6.9e-38	1	1
ENSELUP00000038114	DEAD	PF00270.29	7e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000028299	-	3022	-	ENSELUP00000038114	448 (aa)	-	-
ENSELUT00000040558	-	2232	XM_013135458	ENSELUP00000018380	430 (aa)	XP_012990912	UPI000661A670

Gene Model

Click here to download ENSELUG00000017904's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03013	RNA transport	KEGG
els03015	mRNA surveillance pathway	KEGG
els03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000017904's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000017904	ddx39b	87	31.510	ENSELUG00000000838	-	78	31.609
ENSELUG00000017904	ddx39b	83	30.790	ENSELUG00000004740	zgc:193690	82	30.990
ENSELUG00000017904	ddx39b	87	31.937	ENSELUG00000012963	ddx49	79	31.937
ENSELUG00000017904	ddx39b	80	35.159	ENSELUG00000009495	ddx47	65	35.159
ENSELUG00000017904	ddx39b	93	30.023	ENSELUG00000005585	ddx59	65	30.023
ENSELUG00000017904	ddx39b	90	36.364	ENSELUG00000022538	-	77	36.458
ENSELUG00000017904	ddx39b	100	87.907	ENSELUG00000006779	-	91	88.263
ENSELUG00000017904	ddx39b	100	87.442	ENSELUG00000010581	DDX39A	100	87.442
ENSELUG00000017904	ddx39b	86	30.491	ENSELUG00000019496	DDX41	62	30.491
ENSELUG00000017904	ddx39b	85	38.356	ENSELUG00000018528	eif4a3	89	38.356
ENSELUG00000017904	ddx39b	78	30.659	ENSELUG00000007424	DDX5	57	31.014
ENSELUG00000017904	ddx39b	89	37.500	ENSELUG00000023923	eif4a2	98	38.356
ENSELUG00000017904	ddx39b	88	36.508	ENSELUG00000022660	ddx6	76	36.508
ENSELUG00000017904	ddx39b	90	36.623	ENSELUG00000020545	ddx61	78	36.719
ENSELUG00000017904	ddx39b	94	36.118	ENSELUG00000009963	eif4a1b	98	36.118
ENSELUG00000017904	ddx39b	77	30.000	ENSELUG00000008640	ddx18	50	30.117
ENSELUG00000017904	ddx39b	78	30.481	ENSELUG00000023518	-	52	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000017904	ddx39b	100	92.343	ENSG00000198563	DDX39B	95	97.753	Homo_sapiens
ENSELUG00000017904	ddx39b	100	92.575	ENSAMEG00000009508	DDX39B	99	92.723	Ailuropoda_melanoleuca
ENSELUG00000017904	ddx39b	99	93.208	ENSACIG00000004534	ddx39b	99	93.318	Amphilophus_citrinellus
ENSELUG00000017904	ddx39b	100	93.750	ENSATEG00000012366	ddx39b	100	93.750	Anabas_testudineus
ENSELUG00000017904	ddx39b	100	92.343	ENSACAG00000012240	DDX39B	100	92.343	Anolis_carolinensis
ENSELUG00000017904	ddx39b	100	92.343	ENSANAG00000030372	DDX39B	100	92.343	Aotus_nancymaae
ENSELUG00000017904	ddx39b	99	90.092	ENSACLG00000018759	ddx39b	99	90.826	Astatotilapia_calliptera
ENSELUG00000017904	ddx39b	100	92.202	ENSAMXG00000017837	ddx39b	100	92.202	Astyanax_mexicanus
ENSELUG00000017904	ddx39b	100	92.343	ENSBTAG00000014490	DDX39B	100	92.343	Bos_taurus
ENSELUG00000017904	ddx39b	100	92.343	ENSCJAG00000003152	DDX39B	100	92.343	Callithrix_jacchus
ENSELUG00000017904	ddx39b	100	92.575	ENSCAFG00000000509	DDX39B	100	95.484	Canis_familiaris
ENSELUG00000017904	ddx39b	100	92.575	ENSCAFG00020020530	DDX39B	100	92.575	Canis_lupus_dingo
ENSELUG00000017904	ddx39b	100	92.343	ENSCHIG00000004579	DDX39B	100	92.343	Capra_hircus
ENSELUG00000017904	ddx39b	100	79.767	ENSTSYG00000029741	-	94	77.045	Carlito_syrichta
ENSELUG00000017904	ddx39b	100	92.343	ENSTSYG00000010226	-	100	92.343	Carlito_syrichta
ENSELUG00000017904	ddx39b	100	92.111	ENSCAPG00000010066	DDX39B	100	92.111	Cavia_aperea
ENSELUG00000017904	ddx39b	100	92.111	ENSCPOG00000002335	DDX39B	100	92.111	Cavia_porcellus
ENSELUG00000017904	ddx39b	100	92.343	ENSCCAG00000027897	DDX39B	100	92.343	Cebus_capucinus
ENSELUG00000017904	ddx39b	99	83.178	ENSCATG00000043709	DDX39B	100	83.217	Cercocebus_atys
ENSELUG00000017904	ddx39b	100	92.111	ENSCLAG00000014555	DDX39B	100	92.111	Chinchilla_lanigera
ENSELUG00000017904	ddx39b	99	92.290	ENSCSAG00000008517	DDX39B	100	92.290	Chlorocebus_sabaeus
ENSELUG00000017904	ddx39b	63	95.604	ENSCPBG00000014671	-	100	95.604	Chrysemys_picta_bellii
ENSELUG00000017904	ddx39b	100	92.343	ENSCANG00000041217	DDX39B	100	92.343	Colobus_angolensis_palliatus
ENSELUG00000017904	ddx39b	57	88.306	ENSCGRG00001017315	-	95	86.603	Cricetulus_griseus_chok1gshd
ENSELUG00000017904	ddx39b	83	80.726	ENSCGRG00001021916	-	89	80.726	Cricetulus_griseus_chok1gshd
ENSELUG00000017904	ddx39b	57	88.306	ENSCGRG00000012479	-	76	88.306	Cricetulus_griseus_crigri
ENSELUG00000017904	ddx39b	100	92.184	ENSDARG00000036069	ddx39b	100	92.414	Danio_rerio
ENSELUG00000017904	ddx39b	100	92.343	ENSDNOG00000010215	DDX39B	100	92.343	Dasypus_novemcinctus
ENSELUG00000017904	ddx39b	87	92.573	ENSDORG00000004985	Ddx39b	100	92.573	Dipodomys_ordii
ENSELUG00000017904	ddx39b	87	78.989	ENSETEG00000009649	DDX39B	87	78.989	Echinops_telfairi
ENSELUG00000017904	ddx39b	100	92.343	ENSEASG00005017156	DDX39B	100	92.343	Equus_asinus_asinus
ENSELUG00000017904	ddx39b	100	92.343	ENSECAG00000007750	DDX39B	100	92.343	Equus_caballus
ENSELUG00000017904	ddx39b	100	92.575	ENSFCAG00000004497	DDX39B	100	92.575	Felis_catus
ENSELUG00000017904	ddx39b	100	92.111	ENSFDAG00000011074	DDX39B	100	92.111	Fukomys_damarensis
ENSELUG00000017904	ddx39b	73	95.570	ENSGAGG00000001300	-	80	95.570	Gopherus_agassizii
ENSELUG00000017904	ddx39b	100	92.343	ENSGGOG00000005989	DDX39B	100	92.343	Gorilla_gorilla
ENSELUG00000017904	ddx39b	100	91.628	ENSHGLG00000019248	DDX39B	100	91.628	Heterocephalus_glaber_female
ENSELUG00000017904	ddx39b	100	91.628	ENSHGLG00100011850	DDX39B	100	91.628	Heterocephalus_glaber_male
ENSELUG00000017904	ddx39b	100	91.743	ENSIPUG00000015733	DDX39B	94	92.431	Ictalurus_punctatus
ENSELUG00000017904	ddx39b	100	91.879	ENSSTOG00000012838	DDX39B	100	91.879	Ictidomys_tridecemlineatus
ENSELUG00000017904	ddx39b	100	92.111	ENSJJAG00000005660	-	100	92.111	Jaculus_jaculus
ENSELUG00000017904	ddx39b	65	80.427	ENSLBEG00000017177	-	81	80.427	Labrus_bergylta
ENSELUG00000017904	ddx39b	99	78.824	ENSLBEG00000012254	ddx39b	99	79.529	Labrus_bergylta
ENSELUG00000017904	ddx39b	100	83.982	ENSLACG00000002110	DDX39B	100	83.982	Latimeria_chalumnae
ENSELUG00000017904	ddx39b	100	92.111	ENSLAFG00000014202	DDX39B	100	92.111	Loxodonta_africana
ENSELUG00000017904	ddx39b	100	92.343	ENSMFAG00000034233	DDX39B	100	92.343	Macaca_fascicularis
ENSELUG00000017904	ddx39b	100	92.343	ENSMMUG00000008839	DDX39B	100	92.343	Macaca_mulatta
ENSELUG00000017904	ddx39b	100	92.343	ENSMNEG00000041059	DDX39B	100	92.343	Macaca_nemestrina
ENSELUG00000017904	ddx39b	100	92.343	ENSMLEG00000043791	DDX39B	100	92.343	Mandrillus_leucophaeus
ENSELUG00000017904	ddx39b	99	90.323	ENSMZEG00005017654	ddx39b	99	91.055	Maylandia_zebra
ENSELUG00000017904	ddx39b	100	92.111	ENSMAUG00000008059	Ddx39b	100	92.111	Mesocricetus_auratus
ENSELUG00000017904	ddx39b	100	92.343	ENSMICG00000017349	DDX39B	100	92.343	Microcebus_murinus
ENSELUG00000017904	ddx39b	100	92.111	ENSMOCG00000011169	Ddx39b	100	92.111	Microtus_ochrogaster
ENSELUG00000017904	ddx39b	88	92.084	ENSMODG00000015791	DDX39B	88	92.084	Monodelphis_domestica
ENSELUG00000017904	ddx39b	100	91.860	ENSMUSG00000019432	Ddx39b	100	93.919	Mus_musculus
ENSELUG00000017904	ddx39b	100	91.860	MGP_PahariEiJ_G0020513	Ddx39b	100	93.919	Mus_pahari
ENSELUG00000017904	ddx39b	100	91.860	MGP_SPRETEiJ_G0022424	Ddx39b	100	91.860	Mus_spretus
ENSELUG00000017904	ddx39b	100	92.575	ENSMPUG00000011407	DDX39B	100	92.575	Mustela_putorius_furo
ENSELUG00000017904	ddx39b	72	95.498	ENSMLUG00000001681	DDX39B	100	95.498	Myotis_lucifugus
ENSELUG00000017904	ddx39b	100	92.343	ENSNGAG00000022948	Ddx39b	100	92.343	Nannospalax_galili
ENSELUG00000017904	ddx39b	66	95.439	ENSNLEG00000006094	DDX39B	81	95.439	Nomascus_leucogenys
ENSELUG00000017904	ddx39b	86	97.297	ENSMEUG00000008264	DDX39B	86	97.297	Notamacropus_eugenii
ENSELUG00000017904	ddx39b	100	92.575	ENSOPRG00000011923	DDX39B	100	92.575	Ochotona_princeps
ENSELUG00000017904	ddx39b	100	91.860	ENSODEG00000018083	DDX39B	100	91.860	Octodon_degus
ENSELUG00000017904	ddx39b	100	91.667	ENSONIG00000004740	ddx39b	100	91.898	Oreochromis_niloticus
ENSELUG00000017904	ddx39b	56	87.500	ENSOANG00000008361	DDX39B	95	87.500	Ornithorhynchus_anatinus
ENSELUG00000017904	ddx39b	100	89.238	ENSOCUG00000024126	DDX39B	100	89.238	Oryctolagus_cuniculus
ENSELUG00000017904	ddx39b	83	87.968	ENSOGAG00000009067	-	100	94.444	Otolemur_garnettii
ENSELUG00000017904	ddx39b	100	91.435	ENSOGAG00000028850	-	100	91.435	Otolemur_garnettii
ENSELUG00000017904	ddx39b	100	92.343	ENSOARG00000008787	DDX39B	98	92.343	Ovis_aries
ENSELUG00000017904	ddx39b	100	92.343	ENSPPAG00000043072	DDX39B	100	92.343	Pan_paniscus
ENSELUG00000017904	ddx39b	100	92.575	ENSPPRG00000001913	DDX39B	100	92.575	Panthera_pardus
ENSELUG00000017904	ddx39b	100	91.395	ENSPTIG00000017669	DDX39B	100	91.395	Panthera_tigris_altaica
ENSELUG00000017904	ddx39b	100	92.343	ENSPTRG00000032509	DDX39B	100	92.343	Pan_troglodytes
ENSELUG00000017904	ddx39b	100	92.343	ENSPANG00000018609	DDX39B	100	92.343	Papio_anubis
ENSELUG00000017904	ddx39b	100	91.991	ENSPKIG00000011324	ddx39b	100	92.449	Paramormyrops_kingsleyae
ENSELUG00000017904	ddx39b	100	91.628	ENSPEMG00000016905	Ddx39b	100	91.628	Peromyscus_maniculatus_bairdii
ENSELUG00000017904	ddx39b	100	92.343	ENSPCIG00000017572	DDX39B	100	92.343	Phascolarctos_cinereus
ENSELUG00000017904	ddx39b	100	92.343	ENSPPYG00000016433	DDX39B	100	92.343	Pongo_abelii
ENSELUG00000017904	ddx39b	66	95.423	ENSPCAG00000003484	DDX39B	100	95.423	Procavia_capensis
ENSELUG00000017904	ddx39b	100	92.343	ENSPCOG00000018656	DDX39B	100	92.343	Propithecus_coquereli
ENSELUG00000017904	ddx39b	100	92.343	ENSPVAG00000004653	DDX39B	100	92.343	Pteropus_vampyrus
ENSELUG00000017904	ddx39b	99	83.138	ENSPNYG00000010382	ddx39b	99	82.679	Pundamilia_nyererei
ENSELUG00000017904	ddx39b	100	92.431	ENSPNAG00000026926	ddx39b	100	92.431	Pygocentrus_nattereri
ENSELUG00000017904	ddx39b	100	91.860	ENSRNOG00000000841	Ddx39b	100	91.860	Rattus_norvegicus
ENSELUG00000017904	ddx39b	100	82.135	ENSRBIG00000031309	DDX39B	100	82.135	Rhinopithecus_bieti
ENSELUG00000017904	ddx39b	100	92.343	ENSRROG00000039517	DDX39B	100	92.343	Rhinopithecus_roxellana
ENSELUG00000017904	ddx39b	100	82.135	ENSSBOG00000035513	-	100	82.135	Saimiri_boliviensis_boliviensis
ENSELUG00000017904	ddx39b	100	92.343	ENSSHAG00000003209	DDX39B	100	92.343	Sarcophilus_harrisii
ENSELUG00000017904	ddx39b	100	92.449	ENSSFOG00015016107	ddx39b	100	93.593	Scleropages_formosus
ENSELUG00000017904	ddx39b	100	93.750	ENSSDUG00000011557	ddx39b	100	94.444	Seriola_dumerili
ENSELUG00000017904	ddx39b	100	93.981	ENSSLDG00000015763	ddx39b	100	94.676	Seriola_lalandi_dorsalis
ENSELUG00000017904	ddx39b	87	80.902	ENSSARG00000005245	DDX39B	100	80.902	Sorex_araneus
ENSELUG00000017904	ddx39b	100	92.593	ENSSPUG00000012805	DDX39B	100	92.593	Sphenodon_punctatus
ENSELUG00000017904	ddx39b	100	92.343	ENSSSCG00000001400	DDX39B	100	95.954	Sus_scrofa
ENSELUG00000017904	ddx39b	100	70.070	ENSTBEG00000003721	DDX39B	100	70.070	Tupaia_belangeri
ENSELUG00000017904	ddx39b	100	84.633	ENSTTRG00000014074	DDX39B	100	84.633	Tursiops_truncatus
ENSELUG00000017904	ddx39b	100	80.139	ENSUAMG00000027335	DDX39B	100	80.139	Ursus_americanus
ENSELUG00000017904	ddx39b	100	83.759	ENSUMAG00000015124	DDX39B	100	83.759	Ursus_maritimus
ENSELUG00000017904	ddx39b	62	83.621	ENSVPAG00000009167	-	74	83.621	Vicugna_pacos
ENSELUG00000017904	ddx39b	100	92.575	ENSVVUG00000019518	DDX39B	99	92.575	Vulpes_vulpes
ENSELUG00000017904	ddx39b	100	81.019	ENSXETG00000002498	ddx39b	100	80.324	Xenopus_tropicalis