EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000017981 (Gene tree)
Gene ID: 105018434
Gene Symbol: chd2
Alias: si:ch211-196l7.5
Full Name: chromodomain helicase DNA binding protein 2
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 52908 bases
Position: chrLG19:23598976-23651883
Accession: 105018434
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000037988	ResIII	PF04851.15	6.6e-07	1	1
ENSELUP00000038060	ResIII	PF04851.15	6.7e-07	1	1
ENSELUP00000018184	ResIII	PF04851.15	6.8e-07	1	1
ENSELUP00000038015	ResIII	PF04851.15	7.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000040481	-	5148	XM_013139002	ENSELUP00000018184	1715 (aa)	XP_012994456	-
ENSELUT00000028227	-	8020	XM_020056818	ENSELUP00000038060	1824 (aa)	XP_019912377	UPI000577AF6C
ENSELUT00000028092	-	7903	XM_020056820	ENSELUP00000038015	1785 (aa)	XP_019912379	UPI0005766398
ENSELUT00000028033	-	7965	XM_020056819	ENSELUP00000037988	1815 (aa)	XP_019912378	UPI000576E503

Gene Model

Click here to download ENSELUG00000017981's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000017981's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000017981	chd2	92	57.747	ENSELUG00000017677	chd1	90	57.508
ENSELUG00000017981	chd2	52	34.760	ENSELUG00000010515	smarca1	56	44.503
ENSELUG00000017981	chd2	52	35.656	ENSELUG00000019499	chd3	60	36.054

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000017981	chd2	100	70.762	ENSG00000173575	CHD2	87	97.959	Homo_sapiens
ENSELUG00000017981	chd2	97	96.552	ENSAPOG00000008913	chd2	100	82.580	Acanthochromis_polyacanthus
ENSELUG00000017981	chd2	64	74.787	ENSAMEG00000010805	-	92	77.479	Ailuropoda_melanoleuca
ENSELUG00000017981	chd2	100	80.513	ENSAOCG00000016332	chd2	100	80.076	Amphiprion_ocellaris
ENSELUG00000017981	chd2	97	96.667	ENSAPEG00000016676	chd2	100	82.715	Amphiprion_percula
ENSELUG00000017981	chd2	100	82.725	ENSATEG00000005246	chd2	100	81.897	Anabas_testudineus
ENSELUG00000017981	chd2	100	70.845	ENSAPLG00000011141	-	95	71.719	Anas_platyrhynchos
ENSELUG00000017981	chd2	98	67.575	ENSACAG00000000088	-	95	68.187	Anolis_carolinensis
ENSELUG00000017981	chd2	94	85.185	ENSANAG00000024017	-	95	72.115	Aotus_nancymaae
ENSELUG00000017981	chd2	98	81.350	ENSACLG00000021370	chd2	95	100.000	Astatotilapia_calliptera
ENSELUG00000017981	chd2	94	85.185	ENSCJAG00000020444	-	95	71.833	Callithrix_jacchus
ENSELUG00000017981	chd2	99	71.243	ENSCAFG00000010998	CHD2	93	76.417	Canis_familiaris
ENSELUG00000017981	chd2	99	69.666	ENSCHIG00000022261	-	95	71.057	Capra_hircus
ENSELUG00000017981	chd2	100	71.283	ENSTSYG00000003272	-	98	72.093	Carlito_syrichta
ENSELUG00000017981	chd2	93	74.141	ENSCPOG00000005800	-	95	76.841	Cavia_porcellus
ENSELUG00000017981	chd2	94	85.185	ENSCCAG00000035304	-	95	72.172	Cebus_capucinus
ENSELUG00000017981	chd2	100	70.708	ENSCATG00000031069	-	95	72.075	Cercocebus_atys
ENSELUG00000017981	chd2	100	70.885	ENSCLAG00000016269	-	95	71.808	Chinchilla_lanigera
ENSELUG00000017981	chd2	100	70.762	ENSCSAG00000017007	-	95	72.131	Chlorocebus_sabaeus
ENSELUG00000017981	chd2	75	79.974	ENSCHOG00000000608	-	76	80.706	Choloepus_hoffmanni
ENSELUG00000017981	chd2	82	78.017	ENSCPBG00000018049	-	97	88.298	Chrysemys_picta_bellii
ENSELUG00000017981	chd2	78	52.475	ENSCSAVG00000007580	-	94	57.595	Ciona_savignyi
ENSELUG00000017981	chd2	100	70.708	ENSCANG00000038126	-	95	72.075	Colobus_angolensis_palliatus
ENSELUG00000017981	chd2	100	70.853	ENSCGRG00001006649	Chd2	95	71.833	Cricetulus_griseus_chok1gshd
ENSELUG00000017981	chd2	100	70.853	ENSCGRG00000018154	Chd2	95	71.833	Cricetulus_griseus_crigri
ENSELUG00000017981	chd2	98	71.884	ENSCSEG00000003646	chd2	92	100.000	Cynoglossus_semilaevis
ENSELUG00000017981	chd2	97	96.552	ENSCVAG00000002427	chd2	90	96.552	Cyprinodon_variegatus
ENSELUG00000017981	chd2	97	93.103	ENSDARG00000060687	chd2	100	80.472	Danio_rerio
ENSELUG00000017981	chd2	94	85.185	ENSDNOG00000009796	-	99	70.389	Dasypus_novemcinctus
ENSELUG00000017981	chd2	50	74.468	ENSEBUG00000014994	chd2	75	74.468	Eptatretus_burgeri
ENSELUG00000017981	chd2	98	72.836	ENSEASG00005015526	-	97	77.899	Equus_asinus_asinus
ENSELUG00000017981	chd2	100	71.789	ENSFALG00000010369	-	95	72.558	Ficedula_albicollis
ENSELUG00000017981	chd2	100	70.601	ENSFDAG00000020651	-	98	70.465	Fukomys_damarensis
ENSELUG00000017981	chd2	94	79.717	ENSFHEG00000002119	chd2	99	76.573	Fundulus_heteroclitus
ENSELUG00000017981	chd2	95	79.424	ENSGMOG00000002890	chd2	99	78.881	Gadus_morhua
ENSELUG00000017981	chd2	94	85.185	ENSGALG00000006949	CHD2	95	72.645	Gallus_gallus
ENSELUG00000017981	chd2	98	79.751	ENSGAFG00000001905	chd2	94	89.189	Gambusia_affinis
ENSELUG00000017981	chd2	95	81.304	ENSGACG00000013246	chd2	98	81.410	Gasterosteus_aculeatus
ENSELUG00000017981	chd2	83	79.420	ENSGAGG00000013176	-	98	89.247	Gopherus_agassizii
ENSELUG00000017981	chd2	100	69.887	ENSGGOG00000015677	CHD2	95	71.210	Gorilla_gorilla
ENSELUG00000017981	chd2	97	96.667	ENSHBUG00000017947	chd2	95	100.000	Haplochromis_burtoni
ENSELUG00000017981	chd2	100	70.509	ENSHGLG00000004435	CHD2	98	69.785	Heterocephalus_glaber_female
ENSELUG00000017981	chd2	100	70.134	ENSHGLG00100016376	-	98	69.400	Heterocephalus_glaber_male
ENSELUG00000017981	chd2	99	75.890	ENSHCOG00000008855	chd2	91	97.143	Hippocampus_comes
ENSELUG00000017981	chd2	98	76.224	ENSIPUG00000000488	chd2	72	82.803	Ictalurus_punctatus
ENSELUG00000017981	chd2	100	71.298	ENSSTOG00000001270	-	95	72.414	Ictidomys_tridecemlineatus
ENSELUG00000017981	chd2	94	85.185	ENSJJAG00000000213	Chd2	95	71.437	Jaculus_jaculus
ENSELUG00000017981	chd2	88	81.201	ENSKMAG00000015849	chd2	99	81.530	Kryptolebias_marmoratus
ENSELUG00000017981	chd2	76	73.767	ENSLAFG00000016885	-	98	80.997	Loxodonta_africana
ENSELUG00000017981	chd2	100	70.762	ENSMFAG00000033343	-	95	72.131	Macaca_fascicularis
ENSELUG00000017981	chd2	100	70.762	ENSMMUG00000011782	-	95	72.131	Macaca_mulatta
ENSELUG00000017981	chd2	100	70.525	ENSMNEG00000036875	-	95	71.880	Macaca_nemestrina
ENSELUG00000017981	chd2	100	70.762	ENSMLEG00000035026	-	95	72.131	Mandrillus_leucophaeus
ENSELUG00000017981	chd2	100	82.915	ENSMAMG00000009082	chd2	100	82.395	Mastacembelus_armatus
ENSELUG00000017981	chd2	98	81.350	ENSMZEG00005021333	chd2	95	100.000	Maylandia_zebra
ENSELUG00000017981	chd2	96	85.185	ENSMGAG00000008966	-	96	72.604	Meleagris_gallopavo
ENSELUG00000017981	chd2	100	69.887	ENSMICG00000000332	-	95	71.493	Microcebus_murinus
ENSELUG00000017981	chd2	94	85.185	ENSMOCG00000015124	Chd2	95	71.849	Microtus_ochrogaster
ENSELUG00000017981	chd2	96	85.185	ENSMODG00000013158	-	95	72.912	Monodelphis_domestica
ENSELUG00000017981	chd2	98	81.631	ENSMALG00000007755	chd2	99	80.067	Monopterus_albus
ENSELUG00000017981	chd2	100	71.053	MGP_CAROLIEiJ_G0029860	Chd2	95	72.100	Mus_caroli
ENSELUG00000017981	chd2	100	70.478	ENSMUSG00000078671	Chd2	95	71.946	Mus_musculus
ENSELUG00000017981	chd2	100	70.869	MGP_PahariEiJ_G0013082	Chd2	95	71.905	Mus_pahari
ENSELUG00000017981	chd2	100	70.853	MGP_SPRETEiJ_G0030962	Chd2	95	71.889	Mus_spretus
ENSELUG00000017981	chd2	94	85.185	ENSMPUG00000017577	-	95	72.285	Mustela_putorius_furo
ENSELUG00000017981	chd2	100	70.479	ENSMLUG00000009292	-	99	69.364	Myotis_lucifugus
ENSELUG00000017981	chd2	94	85.185	ENSNGAG00000010792	Chd2	95	72.115	Nannospalax_galili
ENSELUG00000017981	chd2	98	82.405	ENSNBRG00000020591	chd2	94	100.000	Neolamprologus_brichardi
ENSELUG00000017981	chd2	94	85.185	ENSNLEG00000012349	-	94	71.990	Nomascus_leucogenys
ENSELUG00000017981	chd2	67	85.185	ENSMEUG00000001522	-	66	87.500	Notamacropus_eugenii
ENSELUG00000017981	chd2	100	69.817	ENSODEG00000016028	-	95	71.017	Octodon_degus
ENSELUG00000017981	chd2	97	96.667	ENSONIG00000015136	chd2	100	82.632	Oreochromis_niloticus
ENSELUG00000017981	chd2	90	69.284	ENSOANG00000004385	-	99	69.088	Ornithorhynchus_anatinus
ENSELUG00000017981	chd2	94	85.185	ENSOCUG00000001628	-	91	78.243	Oryctolagus_cuniculus
ENSELUG00000017981	chd2	97	93.103	ENSORLG00000008403	chd2	100	81.431	Oryzias_latipes
ENSELUG00000017981	chd2	96	92.593	ENSORLG00020004138	chd2	100	81.148	Oryzias_latipes_hni
ENSELUG00000017981	chd2	97	93.103	ENSOMEG00000005831	chd2	91	93.103	Oryzias_melastigma
ENSELUG00000017981	chd2	100	69.206	ENSOGAG00000010399	-	99	68.565	Otolemur_garnettii
ENSELUG00000017981	chd2	100	70.279	ENSOARG00000010343	-	98	70.530	Ovis_aries
ENSELUG00000017981	chd2	100	70.295	ENSPPAG00000030381	-	95	71.093	Pan_paniscus
ENSELUG00000017981	chd2	100	70.815	ENSPTRG00000007478	CHD2	95	72.188	Pan_troglodytes
ENSELUG00000017981	chd2	100	68.170	ENSPANG00000033355	-	95	69.400	Papio_anubis
ENSELUG00000017981	chd2	97	93.103	ENSPKIG00000000495	chd2	91	93.103	Paramormyrops_kingsleyae
ENSELUG00000017981	chd2	88	77.466	ENSPMGG00000009941	chd2	99	77.611	Periophthalmus_magnuspinnatus
ENSELUG00000017981	chd2	100	70.853	ENSPEMG00000019507	Chd2	95	71.889	Peromyscus_maniculatus_bairdii
ENSELUG00000017981	chd2	92	74.509	ENSPCIG00000009417	-	99	76.646	Phascolarctos_cinereus
ENSELUG00000017981	chd2	100	82.186	ENSPFOG00000007050	chd2	100	81.967	Poecilia_formosa
ENSELUG00000017981	chd2	100	82.305	ENSPLAG00000005067	chd2	100	82.032	Poecilia_latipinna
ENSELUG00000017981	chd2	100	82.240	ENSPMEG00000019628	chd2	100	82.022	Poecilia_mexicana
ENSELUG00000017981	chd2	100	69.582	ENSPPYG00000006799	-	95	70.888	Pongo_abelii
ENSELUG00000017981	chd2	100	71.084	ENSPCOG00000028084	-	95	72.188	Propithecus_coquereli
ENSELUG00000017981	chd2	98	81.409	ENSPNYG00000010273	chd2	95	100.000	Pundamilia_nyererei
ENSELUG00000017981	chd2	95	78.416	ENSPNAG00000016719	chd2	70	82.612	Pygocentrus_nattereri
ENSELUG00000017981	chd2	100	71.014	ENSRNOG00000012716	Chd2	97	70.615	Rattus_norvegicus
ENSELUG00000017981	chd2	100	69.028	ENSRBIG00000036875	-	95	70.419	Rhinopithecus_bieti
ENSELUG00000017981	chd2	100	70.762	ENSRROG00000041087	-	95	72.131	Rhinopithecus_roxellana
ENSELUG00000017981	chd2	100	70.746	ENSSBOG00000023754	-	95	72.115	Saimiri_boliviensis_boliviensis
ENSELUG00000017981	chd2	94	85.185	ENSSHAG00000012513	-	95	72.927	Sarcophilus_harrisii
ENSELUG00000017981	chd2	97	93.103	ENSSFOG00015023759	chd2	91	93.103	Scleropages_formosus
ENSELUG00000017981	chd2	100	81.843	ENSSMAG00000001726	chd2	100	81.233	Scophthalmus_maximus
ENSELUG00000017981	chd2	98	82.663	ENSSLDG00000001146	chd2	96	82.204	Seriola_lalandi_dorsalis
ENSELUG00000017981	chd2	78	80.000	ENSSARG00000014112	-	75	80.000	Sorex_araneus
ENSELUG00000017981	chd2	98	69.422	ENSSPUG00000011266	-	91	87.500	Sphenodon_punctatus
ENSELUG00000017981	chd2	98	83.089	ENSSPAG00000016452	chd2	96	82.964	Stegastes_partitus
ENSELUG00000017981	chd2	100	71.030	ENSSSCG00000002266	-	99	74.214	Sus_scrofa
ENSELUG00000017981	chd2	100	71.544	ENSTGUG00000008540	-	95	72.301	Taeniopygia_guttata
ENSELUG00000017981	chd2	87	77.459	ENSTRUG00000008842	chd2	86	78.656	Takifugu_rubripes
ENSELUG00000017981	chd2	87	81.385	ENSTNIG00000010760	chd2	98	80.984	Tetraodon_nigroviridis
ENSELUG00000017981	chd2	75	82.500	ENSTBEG00000017730	-	73	72.247	Tupaia_belangeri
ENSELUG00000017981	chd2	89	88.462	ENSTTRG00000000430	-	90	74.888	Tursiops_truncatus
ENSELUG00000017981	chd2	100	69.898	ENSUMAG00000000083	-	95	70.772	Ursus_maritimus
ENSELUG00000017981	chd2	83	87.342	ENSVPAG00000009645	-	81	87.161	Vicugna_pacos
ENSELUG00000017981	chd2	92	68.549	ENSXETG00000024129	chd2	71	77.874	Xenopus_tropicalis
ENSELUG00000017981	chd2	98	79.668	ENSXCOG00000020255	chd2	96	100.000	Xiphophorus_couchianus
ENSELUG00000017981	chd2	96	96.552	ENSXMAG00000002707	chd2	94	100.000	Xiphophorus_maculatus