EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000018067 (Gene tree)
Gene ID: 105006364
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 6738 bases
Position: chrLG13:30273410-30280147
Accession: 105006364
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000038239	SMN	PF06003.12	1.1e-110	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000028509	-	3895	XM_010864848	ENSELUP00000038239	278 (aa)	XP_010863150	UPI00057792E1

Gene Model

Click here to download ENSELUG00000018067's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000018067's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000018067	smn1	94	52.878	ENSG00000205571	SMN2	78	73.077	Homo_sapiens
ENSELUG00000018067	smn1	94	52.878	ENSG00000172062	SMN1	78	73.077	Homo_sapiens
ENSELUG00000018067	smn1	100	67.958	ENSAPOG00000011324	smn1	100	68.310	Acanthochromis_polyacanthus
ENSELUG00000018067	smn1	94	53.650	ENSAMEG00000003316	-	89	55.556	Ailuropoda_melanoleuca
ENSELUG00000018067	smn1	93	64.504	ENSACIG00000019772	-	99	64.504	Amphilophus_citrinellus
ENSELUG00000018067	smn1	60	67.456	ENSACIG00000007598	smn1	99	67.222	Amphilophus_citrinellus
ENSELUG00000018067	smn1	100	67.958	ENSAOCG00000024444	smn1	100	68.310	Amphiprion_ocellaris
ENSELUG00000018067	smn1	100	67.958	ENSAPEG00000016504	smn1	100	68.310	Amphiprion_percula
ENSELUG00000018067	smn1	95	66.667	ENSATEG00000002182	smn1	82	67.407	Anabas_testudineus
ENSELUG00000018067	smn1	71	48.058	ENSAPLG00000010912	-	99	50.971	Anas_platyrhynchos
ENSELUG00000018067	smn1	98	54.286	ENSACAG00000010017	-	96	56.028	Anolis_carolinensis
ENSELUG00000018067	smn1	94	51.838	ENSANAG00000032133	-	91	51.246	Aotus_nancymaae
ENSELUG00000018067	smn1	99	64.875	ENSACLG00000007308	smn1	94	65.091	Astatotilapia_calliptera
ENSELUG00000018067	smn1	100	66.667	ENSAMXG00000013884	smn1	99	66.788	Astyanax_mexicanus
ENSELUG00000018067	smn1	94	51.971	ENSBTAG00000005743	SMN2	93	52.727	Bos_taurus
ENSELUG00000018067	smn1	94	51.254	ENSCJAG00000016290	-	86	73.077	Callithrix_jacchus
ENSELUG00000018067	smn1	94	54.122	ENSCAFG00000007812	SMN	92	55.797	Canis_familiaris
ENSELUG00000018067	smn1	94	54.122	ENSCAFG00020019229	-	86	55.797	Canis_lupus_dingo
ENSELUG00000018067	smn1	94	51.601	ENSCHIG00000015559	-	91	53.791	Capra_hircus
ENSELUG00000018067	smn1	94	51.128	ENSTSYG00000012058	-	73	91.892	Carlito_syrichta
ENSELUG00000018067	smn1	72	45.631	ENSCAPG00000011021	-	87	47.549	Cavia_aperea
ENSELUG00000018067	smn1	95	50.545	ENSCPOG00000036973	-	93	53.169	Cavia_porcellus
ENSELUG00000018067	smn1	95	48.936	ENSCPOG00000012328	-	94	51.546	Cavia_porcellus
ENSELUG00000018067	smn1	94	46.816	ENSCCAG00000018127	-	91	53.047	Cebus_capucinus
ENSELUG00000018067	smn1	94	52.727	ENSCATG00000037002	-	93	54.182	Cercocebus_atys
ENSELUG00000018067	smn1	94	47.872	ENSCLAG00000000284	-	92	54.839	Chinchilla_lanigera
ENSELUG00000018067	smn1	94	51.636	ENSCSAG00000015688	-	91	54.643	Chlorocebus_sabaeus
ENSELUG00000018067	smn1	63	80.000	ENSCHOG00000007346	-	100	44.928	Choloepus_hoffmanni
ENSELUG00000018067	smn1	99	53.979	ENSCPBG00000010968	-	99	53.846	Chrysemys_picta_bellii
ENSELUG00000018067	smn1	94	52.985	ENSCANG00000038242	-	93	56.343	Colobus_angolensis_palliatus
ENSELUG00000018067	smn1	94	49.057	ENSCANG00000033324	-	89	52.030	Colobus_angolensis_palliatus
ENSELUG00000018067	smn1	94	53.114	ENSCGRG00001017959	-	92	54.745	Cricetulus_griseus_chok1gshd
ENSELUG00000018067	smn1	79	43.421	ENSCGRG00001016998	-	91	42.435	Cricetulus_griseus_chok1gshd
ENSELUG00000018067	smn1	94	53.114	ENSCGRG00000007698	Smn1	92	54.745	Cricetulus_griseus_crigri
ENSELUG00000018067	smn1	96	56.491	ENSCSEG00000015227	smn1	99	58.304	Cynoglossus_semilaevis
ENSELUG00000018067	smn1	100	63.448	ENSCVAG00000007498	smn1	97	65.836	Cyprinodon_variegatus
ENSELUG00000018067	smn1	100	65.141	ENSDARG00000018494	smn1	100	66.901	Danio_rerio
ENSELUG00000018067	smn1	82	48.117	ENSDNOG00000007283	-	85	51.376	Dasypus_novemcinctus
ENSELUG00000018067	smn1	81	45.815	ENSDNOG00000045949	-	89	47.273	Dasypus_novemcinctus
ENSELUG00000018067	smn1	92	42.857	ENSDORG00000007082	Smn1	92	47.212	Dipodomys_ordii
ENSELUG00000018067	smn1	94	30.769	FBgn0036641	Smn	99	30.403	Drosophila_melanogaster
ENSELUG00000018067	smn1	63	44.693	ENSETEG00000001406	-	93	44.724	Echinops_telfairi
ENSELUG00000018067	smn1	98	38.870	ENSEBUG00000011902	smn1	99	40.068	Eptatretus_burgeri
ENSELUG00000018067	smn1	88	46.360	ENSEASG00005018000	-	89	51.128	Equus_asinus_asinus
ENSELUG00000018067	smn1	94	50.362	ENSECAG00000015215	-	92	54.804	Equus_caballus
ENSELUG00000018067	smn1	88	53.333	ENSEEUG00000015777	-	100	55.859	Erinaceus_europaeus
ENSELUG00000018067	smn1	94	52.985	ENSFCAG00000028292	SMN	92	55.036	Felis_catus
ENSELUG00000018067	smn1	95	54.579	ENSFALG00000012320	-	95	57.407	Ficedula_albicollis
ENSELUG00000018067	smn1	94	48.929	ENSFDAG00000017683	-	92	52.465	Fukomys_damarensis
ENSELUG00000018067	smn1	97	64.855	ENSFHEG00000018508	smn1	97	66.292	Fundulus_heteroclitus
ENSELUG00000018067	smn1	100	63.309	ENSGMOG00000017279	smn1	98	64.875	Gadus_morhua
ENSELUG00000018067	smn1	97	52.669	ENSGALG00000002430	SMN	98	55.474	Gallus_gallus
ENSELUG00000018067	smn1	100	67.845	ENSGAFG00000009501	smn1	97	69.343	Gambusia_affinis
ENSELUG00000018067	smn1	100	68.571	ENSGACG00000010584	smn1	97	68.214	Gasterosteus_aculeatus
ENSELUG00000018067	smn1	99	53.737	ENSGAGG00000011374	-	98	57.895	Gopherus_agassizii
ENSELUG00000018067	smn1	99	39.394	ENSGAGG00000013639	-	93	39.394	Gopherus_agassizii
ENSELUG00000018067	smn1	91	48.462	ENSGGOG00000003872	-	93	51.938	Gorilla_gorilla
ENSELUG00000018067	smn1	61	56.571	ENSGGOG00000026704	-	88	52.764	Gorilla_gorilla
ENSELUG00000018067	smn1	100	67.384	ENSHBUG00000013987	smn1	100	67.384	Haplochromis_burtoni
ENSELUG00000018067	smn1	94	50.178	ENSHGLG00000001905	-	93	51.071	Heterocephalus_glaber_female
ENSELUG00000018067	smn1	94	52.330	ENSHGLG00000001018	-	91	54.676	Heterocephalus_glaber_female
ENSELUG00000018067	smn1	92	50.182	ENSHGLG00100018676	-	96	50.909	Heterocephalus_glaber_male
ENSELUG00000018067	smn1	94	52.330	ENSHGLG00100011252	-	91	54.676	Heterocephalus_glaber_male
ENSELUG00000018067	smn1	94	60.440	ENSHCOG00000017136	smn1	89	64.639	Hippocampus_comes
ENSELUG00000018067	smn1	98	65.942	ENSIPUG00000012580	smn1	87	65.942	Ictalurus_punctatus
ENSELUG00000018067	smn1	91	51.331	ENSSTOG00000012288	-	93	55.849	Ictidomys_tridecemlineatus
ENSELUG00000018067	smn1	52	45.833	ENSJJAG00000014853	-	100	43.434	Jaculus_jaculus
ENSELUG00000018067	smn1	100	65.385	ENSKMAG00000007239	smn1	97	66.788	Kryptolebias_marmoratus
ENSELUG00000018067	smn1	100	65.172	ENSLBEG00000022550	smn1	100	67.018	Labrus_bergylta
ENSELUG00000018067	smn1	99	34.459	ENSLACG00000009808	-	94	37.024	Latimeria_chalumnae
ENSELUG00000018067	smn1	100	53.191	ENSLOCG00000011339	smn1	100	57.951	Lepisosteus_oculatus
ENSELUG00000018067	smn1	100	31.757	ENSLOCG00000000801	-	96	30.032	Lepisosteus_oculatus
ENSELUG00000018067	smn1	94	51.613	ENSLAFG00000003425	-	89	53.405	Loxodonta_africana
ENSELUG00000018067	smn1	94	49.455	ENSMFAG00000008812	-	91	49.648	Macaca_fascicularis
ENSELUG00000018067	smn1	94	53.818	ENSMFAG00000031523	SMN1	95	54.613	Macaca_fascicularis
ENSELUG00000018067	smn1	94	49.091	ENSMMUG00000030594	-	91	49.296	Macaca_mulatta
ENSELUG00000018067	smn1	94	53.818	ENSMMUG00000020214	SMN1	93	55.515	Macaca_mulatta
ENSELUG00000018067	smn1	96	53.214	ENSMNEG00000035094	-	93	55.515	Macaca_nemestrina
ENSELUG00000018067	smn1	61	44.199	ENSMNEG00000036423	-	70	46.032	Macaca_nemestrina
ENSELUG00000018067	smn1	94	53.818	ENSMLEG00000041902	-	93	55.882	Mandrillus_leucophaeus
ENSELUG00000018067	smn1	100	65.493	ENSMAMG00000011034	smn1	100	65.845	Mastacembelus_armatus
ENSELUG00000018067	smn1	100	67.742	ENSMZEG00005013634	smn1	100	67.742	Maylandia_zebra
ENSELUG00000018067	smn1	72	46.377	ENSMGAG00000008889	-	99	48.309	Meleagris_gallopavo
ENSELUG00000018067	smn1	94	52.747	ENSMAUG00000010262	Smn1	92	54.380	Mesocricetus_auratus
ENSELUG00000018067	smn1	59	55.952	ENSMICG00000034708	-	84	54.822	Microcebus_murinus
ENSELUG00000018067	smn1	94	53.480	ENSMOCG00000017833	Smn1	92	55.109	Microtus_ochrogaster
ENSELUG00000018067	smn1	96	58.394	ENSMMOG00000005504	smn1	98	59.420	Mola_mola
ENSELUG00000018067	smn1	96	52.899	ENSMODG00000001436	-	93	56.522	Monodelphis_domestica
ENSELUG00000018067	smn1	100	65.845	ENSMALG00000008025	smn1	100	66.549	Monopterus_albus
ENSELUG00000018067	smn1	94	52.174	MGP_CAROLIEiJ_G0018836	Smn1	92	55.197	Mus_caroli
ENSELUG00000018067	smn1	94	51.812	ENSMUSG00000021645	Smn1	92	55.435	Mus_musculus
ENSELUG00000018067	smn1	94	52.652	MGP_PahariEiJ_G0015911	Smn1	92	54.152	Mus_pahari
ENSELUG00000018067	smn1	94	51.971	MGP_SPRETEiJ_G0019718	Smn1	92	54.804	Mus_spretus
ENSELUG00000018067	smn1	92	51.301	ENSMPUG00000014470	-	93	55.720	Mustela_putorius_furo
ENSELUG00000018067	smn1	94	52.158	ENSMLUG00000010603	-	88	52.650	Myotis_lucifugus
ENSELUG00000018067	smn1	96	50.890	ENSNGAG00000019833	Smn1	94	53.737	Nannospalax_galili
ENSELUG00000018067	smn1	100	67.376	ENSNBRG00000023000	smn1	100	67.376	Neolamprologus_brichardi
ENSELUG00000018067	smn1	94	53.237	ENSNLEG00000004454	-	78	73.077	Nomascus_leucogenys
ENSELUG00000018067	smn1	65	49.479	ENSMEUG00000011393	-	100	50.649	Notamacropus_eugenii
ENSELUG00000018067	smn1	88	53.257	ENSOPRG00000002015	-	100	53.640	Ochotona_princeps
ENSELUG00000018067	smn1	91	53.435	ENSODEG00000015976	-	91	56.089	Octodon_degus
ENSELUG00000018067	smn1	100	67.021	ENSONIG00000011799	smn1	100	67.021	Oreochromis_niloticus
ENSELUG00000018067	smn1	94	53.480	ENSOANG00000001626	-	95	53.597	Ornithorhynchus_anatinus
ENSELUG00000018067	smn1	94	53.480	ENSOCUG00000026649	-	92	54.182	Oryctolagus_cuniculus
ENSELUG00000018067	smn1	94	42.143	ENSOCUG00000025183	-	92	46.479	Oryctolagus_cuniculus
ENSELUG00000018067	smn1	94	53.731	ENSOCUG00000017097	-	91	55.970	Oryctolagus_cuniculus
ENSELUG00000018067	smn1	100	62.191	ENSORLG00000010552	smn1	100	66.197	Oryzias_latipes
ENSELUG00000018067	smn1	100	61.429	ENSORLG00020007936	smn1	100	60.854	Oryzias_latipes_hni
ENSELUG00000018067	smn1	100	61.837	ENSORLG00015022425	smn1	100	65.845	Oryzias_latipes_hsok
ENSELUG00000018067	smn1	100	62.898	ENSOMEG00000007824	smn1	100	66.784	Oryzias_melastigma
ENSELUG00000018067	smn1	91	47.170	ENSOGAG00000031414	-	92	49.818	Otolemur_garnettii
ENSELUG00000018067	smn1	94	50.896	ENSOARG00000005425	-	97	52.727	Ovis_aries
ENSELUG00000018067	smn1	94	52.878	ENSPPAG00000036640	-	78	73.077	Pan_paniscus
ENSELUG00000018067	smn1	94	52.985	ENSPPRG00000005575	-	92	55.036	Panthera_pardus
ENSELUG00000018067	smn1	94	53.285	ENSPTIG00000007745	-	89	65.753	Panthera_tigris_altaica
ENSELUG00000018067	smn1	94	52.650	ENSPTRG00000016955	-	93	54.545	Pan_troglodytes
ENSELUG00000018067	smn1	96	48.913	ENSPANG00000000253	-	93	50.350	Papio_anubis
ENSELUG00000018067	smn1	94	53.818	ENSPANG00000013601	-	91	55.755	Papio_anubis
ENSELUG00000018067	smn1	100	58.214	ENSPKIG00000011096	smn1	100	56.842	Paramormyrops_kingsleyae
ENSELUG00000018067	smn1	95	52.536	ENSPSIG00000014787	-	86	51.460	Pelodiscus_sinensis
ENSELUG00000018067	smn1	100	61.189	ENSPMGG00000012285	smn1	97	65.779	Periophthalmus_magnuspinnatus
ENSELUG00000018067	smn1	93	41.304	ENSPMAG00000005004	smn1	93	39.384	Petromyzon_marinus
ENSELUG00000018067	smn1	96	53.261	ENSPCIG00000025764	-	94	56.884	Phascolarctos_cinereus
ENSELUG00000018067	smn1	100	67.491	ENSPFOG00000007786	smn1	97	68.000	Poecilia_formosa
ENSELUG00000018067	smn1	100	67.845	ENSPLAG00000012071	smn1	97	68.364	Poecilia_latipinna
ENSELUG00000018067	smn1	100	67.491	ENSPMEG00000017085	smn1	97	68.000	Poecilia_mexicana
ENSELUG00000018067	smn1	100	68.198	ENSPREG00000005824	smn1	97	69.708	Poecilia_reticulata
ENSELUG00000018067	smn1	59	73.913	ENSPPYG00000019189	-	99	39.024	Pongo_abelii
ENSELUG00000018067	smn1	91	51.661	ENSPPYG00000015533	-	95	53.114	Pongo_abelii
ENSELUG00000018067	smn1	91	52.222	ENSPCAG00000004187	-	97	52.399	Procavia_capensis
ENSELUG00000018067	smn1	63	51.111	ENSPCOG00000022307	-	89	49.020	Propithecus_coquereli
ENSELUG00000018067	smn1	94	52.190	ENSPVAG00000005977	-	91	56.159	Pteropus_vampyrus
ENSELUG00000018067	smn1	100	67.376	ENSPNYG00000014148	smn1	100	67.376	Pundamilia_nyererei
ENSELUG00000018067	smn1	98	66.182	ENSPNAG00000014007	smn1	86	66.182	Pygocentrus_nattereri
ENSELUG00000018067	smn1	94	51.661	ENSRNOG00000018067	Smn1	92	53.650	Rattus_norvegicus
ENSELUG00000018067	smn1	91	51.351	ENSRBIG00000036775	-	88	49.442	Rhinopithecus_bieti
ENSELUG00000018067	smn1	94	51.636	ENSRBIG00000037052	-	91	55.755	Rhinopithecus_bieti
ENSELUG00000018067	smn1	94	49.808	ENSRROG00000031088	-	90	48.339	Rhinopithecus_roxellana
ENSELUG00000018067	smn1	94	51.636	ENSRROG00000039399	-	93	55.515	Rhinopithecus_roxellana
ENSELUG00000018067	smn1	56	54.321	ENSSBOG00000020112	-	87	47.510	Saimiri_boliviensis_boliviensis
ENSELUG00000018067	smn1	94	50.562	ENSSBOG00000011665	-	85	73.077	Saimiri_boliviensis_boliviensis
ENSELUG00000018067	smn1	96	52.536	ENSSHAG00000001499	-	99	53.986	Sarcophilus_harrisii
ENSELUG00000018067	smn1	100	63.082	ENSSFOG00015015507	smn1	100	63.441	Scleropages_formosus
ENSELUG00000018067	smn1	100	65.248	ENSSMAG00000007922	smn1	100	65.957	Scophthalmus_maximus
ENSELUG00000018067	smn1	100	68.662	ENSSDUG00000018533	smn1	100	68.662	Seriola_dumerili
ENSELUG00000018067	smn1	100	69.014	ENSSLDG00000021135	smn1	100	69.014	Seriola_lalandi_dorsalis
ENSELUG00000018067	smn1	99	56.993	ENSSPUG00000000373	-	98	56.794	Sphenodon_punctatus
ENSELUG00000018067	smn1	100	67.254	ENSSPAG00000004345	smn1	100	67.254	Stegastes_partitus
ENSELUG00000018067	smn1	72	31.343	ENSSSCG00000033865	-	92	37.811	Sus_scrofa
ENSELUG00000018067	smn1	94	41.887	ENSSSCG00000029127	-	91	42.966	Sus_scrofa
ENSELUG00000018067	smn1	94	54.152	ENSSSCG00000016970	-	91	56.679	Sus_scrofa
ENSELUG00000018067	smn1	91	51.648	ENSTGUG00000001548	-	95	54.945	Taeniopygia_guttata
ENSELUG00000018067	smn1	97	57.143	ENSTRUG00000000736	smn	97	61.455	Takifugu_rubripes
ENSELUG00000018067	smn1	100	59.233	ENSTNIG00000009892	smn1	100	59.375	Tetraodon_nigroviridis
ENSELUG00000018067	smn1	63	54.494	ENSTBEG00000002399	-	91	54.315	Tupaia_belangeri
ENSELUG00000018067	smn1	94	53.506	ENSTTRG00000005080	-	91	54.710	Tursiops_truncatus
ENSELUG00000018067	smn1	56	58.491	ENSUAMG00000024947	-	69	54.315	Ursus_americanus
ENSELUG00000018067	smn1	94	53.650	ENSUMAG00000007842	-	69	55.556	Ursus_maritimus
ENSELUG00000018067	smn1	91	48.837	ENSVPAG00000009887	-	93	49.624	Vicugna_pacos
ENSELUG00000018067	smn1	94	54.122	ENSVVUG00000006934	-	92	55.797	Vulpes_vulpes
ENSELUG00000018067	smn1	95	55.311	ENSXETG00000018189	smn2	92	57.818	Xenopus_tropicalis
ENSELUG00000018067	smn1	100	67.138	ENSXMAG00000001521	smn1	97	68.613	Xiphophorus_maculatus