EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Description

Ensembl ID: ENSELUG00000018267 (Gene tree)
Gene ID: 105006948
Gene Symbol: pigs
Alias: zgc:152927
Full Name: phosphatidylinositol glycan anchor biosynthesis class S
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 23182 bases
Position: chrLG07:45616089-45639270
Accession: 105006948
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000038381	RRM_1	PF00076.22	1.2e-32	1	2
ENSELUP00000038381	RRM_1	PF00076.22	1.2e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000040728	-	768	XM_010865688	ENSELUP00000038381	255 (aa)	XP_010863990	UPI0005777553
ENSELUT00000028803	-	1650	-	ENSELUP00000018831	549 (aa)	-	-
ENSELUT00000040740	-	3359	XM_010865689	ENSELUP00000038409	559 (aa)	XP_010863991	UPI00057759F0

Gene Model

Click here to download ENSELUG00000018267's gene model file

Pathways

Pathway ID	Pathway Name	Source
els00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	KEGG
els01100	Metabolic pathways	KEGG
els03040	Spliceosome	KEGG
els05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000018267's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000018267	pigs	66	42.077	ENSELUG00000017551	srsf4	93	44.853
ENSELUG00000018267	pigs	71	67.568	ENSELUG00000012644	SRSF9	72	65.946
ENSELUG00000018267	pigs	64	46.703	ENSELUG00000019852	srsf5b	53	46.629
ENSELUG00000018267	pigs	65	46.023	ENSELUG00000024182	SRSF6	87	41.912
ENSELUG00000018267	pigs	92	59.414	ENSELUG00000021669	srsf9	72	66.667
ENSELUG00000018267	pigs	65	46.199	ENSELUG00000013506	SRSF6	84	35.857
ENSELUG00000018267	pigs	79	94.059	ENSELUG00000021646	srsf1a	78	92.079
ENSELUG00000018267	pigs	66	42.553	ENSELUG00000020439	srsf5a	57	43.478