EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000018441 (Gene tree)
Gene ID: 105006093
Gene Symbol: tomm20a
Alias: arid4b|ch1073-321c8.1|wu:fk47b11
Full Name: AT-rich interaction domain 4B
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 62369 bases
Position: chrLG05:1081979-1144347
Accession: 105006093
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000038442	Tudor-knot	PF11717.8	1.7e-09	1	1
ENSELUP00000018918	Tudor-knot	PF11717.8	1.7e-09	1	1
ENSELUP00000018924	Tudor-knot	PF11717.8	1.7e-09	1	1
ENSELUP00000018946	Tudor-knot	PF11717.8	1.9e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000028939	-	5543	XM_020046478	ENSELUP00000018936	1042 (aa)	XP_019902037	-
ENSELUT00000028904	-	3518	-	ENSELUP00000018924	1021 (aa)	-	-
ENSELUT00000028956	-	5759	XM_020046477	ENSELUP00000018946	1114 (aa)	XP_019902036	-
ENSELUT00000028925	-	3420	-	ENSELUP00000038442	1016 (aa)	-	-
ENSELUT00000040767	-	3441	-	ENSELUP00000018918	1021 (aa)	-	-
ENSELUT00000029041	-	411	-	ENSELUP00000019019	136 (aa)	-	-
ENSELUT00000028976	-	2856	-	ENSELUP00000018965	951 (aa)	-	-

Gene Model

Click here to download ENSELUG00000018441's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000018441's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000018441	tomm20a	91	56.608	ENSAPOG00000010823	tomm20a	64	57.160	Acanthochromis_polyacanthus
ENSELUG00000018441	tomm20a	79	86.022	ENSACIG00000006313	tomm20a	66	79.902	Amphilophus_citrinellus
ENSELUG00000018441	tomm20a	91	55.678	ENSAOCG00000003330	tomm20a	64	56.914	Amphiprion_ocellaris
ENSELUG00000018441	tomm20a	91	56.340	ENSAPEG00000024018	tomm20a	64	57.037	Amphiprion_percula
ENSELUG00000018441	tomm20a	91	55.361	ENSATEG00000014930	tomm20a	65	55.037	Anabas_testudineus
ENSELUG00000018441	tomm20a	76	80.808	ENSACLG00000023521	tomm20a	61	78.641	Astatotilapia_calliptera
ENSELUG00000018441	tomm20a	52	88.000	ENSAMXG00000003657	tomm20a	72	48.905	Astyanax_mexicanus
ENSELUG00000018441	tomm20a	52	37.018	ENSCPOG00000034766	ARID4B	58	41.169	Cavia_porcellus
ENSELUG00000018441	tomm20a	91	57.931	ENSCSEG00000012928	tomm20a	66	54.386	Cynoglossus_semilaevis
ENSELUG00000018441	tomm20a	89	53.947	ENSCVAG00000003244	tomm20a	68	54.676	Cyprinodon_variegatus
ENSELUG00000018441	tomm20a	79	55.634	ENSDARG00000090656	tomm20a	66	48.546	Danio_rerio
ENSELUG00000018441	tomm20a	80	40.321	ENSDORG00000006422	Arid4b	57	41.191	Dipodomys_ordii
ENSELUG00000018441	tomm20a	52	37.434	ENSFDAG00000014194	ARID4B	57	41.843	Fukomys_damarensis
ENSELUG00000018441	tomm20a	91	54.009	ENSFHEG00000003798	tomm20a	65	54.703	Fundulus_heteroclitus
ENSELUG00000018441	tomm20a	78	52.882	ENSGMOG00000018747	tomm20a	62	54.806	Gadus_morhua
ENSELUG00000018441	tomm20a	89	52.695	ENSGACG00000004298	tomm20a	64	55.296	Gasterosteus_aculeatus
ENSELUG00000018441	tomm20a	91	55.088	ENSHBUG00000020369	tomm20a	69	54.054	Haplochromis_burtoni
ENSELUG00000018441	tomm20a	81	66.429	ENSHCOG00000010376	tomm20a	67	65.613	Hippocampus_comes
ENSELUG00000018441	tomm20a	89	44.744	ENSIPUG00000014234	arid4b	65	48.293	Ictalurus_punctatus
ENSELUG00000018441	tomm20a	53	37.153	ENSSTOG00000002810	ARID4B	57	40.485	Ictidomys_tridecemlineatus
ENSELUG00000018441	tomm20a	78	79.612	ENSKMAG00000010987	tomm20a	61	84.314	Kryptolebias_marmoratus
ENSELUG00000018441	tomm20a	90	56.278	ENSMAMG00000017134	tomm20a	68	56.055	Mastacembelus_armatus
ENSELUG00000018441	tomm20a	94	54.057	ENSMZEG00005009879	tomm20a	69	54.054	Maylandia_zebra
ENSELUG00000018441	tomm20a	78	86.170	ENSMMOG00000000561	tomm20a	55	86.170	Mola_mola
ENSELUG00000018441	tomm20a	93	53.614	ENSMALG00000005205	tomm20a	69	54.054	Monopterus_albus
ENSELUG00000018441	tomm20a	82	75.576	ENSNBRG00000019684	tomm20a	67	75.576	Neolamprologus_brichardi
ENSELUG00000018441	tomm20a	94	52.698	ENSORLG00000012510	tomm20a	69	52.870	Oryzias_latipes
ENSELUG00000018441	tomm20a	81	86.022	ENSORLG00020013988	tomm20a	58	86.022	Oryzias_latipes_hni
ENSELUG00000018441	tomm20a	81	86.022	ENSORLG00015022835	tomm20a	58	86.022	Oryzias_latipes_hsok
ENSELUG00000018441	tomm20a	90	53.735	ENSOMEG00000000521	tomm20a	71	54.944	Oryzias_melastigma
ENSELUG00000018441	tomm20a	91	54.042	ENSPFOG00000019430	tomm20a	64	55.611	Poecilia_formosa
ENSELUG00000018441	tomm20a	91	54.042	ENSPLAG00000010554	tomm20a	64	55.611	Poecilia_latipinna
ENSELUG00000018441	tomm20a	91	52.095	ENSPMEG00000003093	tomm20a	55	55.556	Poecilia_mexicana
ENSELUG00000018441	tomm20a	91	54.485	ENSPREG00000007996	tomm20a	70	53.710	Poecilia_reticulata
ENSELUG00000018441	tomm20a	94	54.485	ENSPNYG00000013988	tomm20a	71	50.111	Pundamilia_nyererei
ENSELUG00000018441	tomm20a	93	51.449	ENSPNAG00000000523	tomm20a	61	52.459	Pygocentrus_nattereri
ENSELUG00000018441	tomm20a	90	45.205	ENSSFOG00015000132	arid4b	65	47.006	Scleropages_formosus
ENSELUG00000018441	tomm20a	55	45.985	ENSSFOG00015008923	tomm20a	76	50.000	Scleropages_formosus
ENSELUG00000018441	tomm20a	90	53.855	ENSSMAG00000010430	tomm20a	64	55.177	Scophthalmus_maximus
ENSELUG00000018441	tomm20a	91	56.858	ENSSDUG00000003019	tomm20a	64	57.143	Seriola_dumerili
ENSELUG00000018441	tomm20a	50	36.746	ENSSPUG00000015466	ARID4B	60	37.733	Sphenodon_punctatus
ENSELUG00000018441	tomm20a	91	56.174	ENSSPAG00000007358	tomm20a	64	57.322	Stegastes_partitus
ENSELUG00000018441	tomm20a	71	53.595	ENSTRUG00000002893	tomm20a	70	52.288	Takifugu_rubripes
ENSELUG00000018441	tomm20a	91	54.111	ENSXMAG00000006538	tomm20a	64	55.335	Xiphophorus_maculatus