EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000018483 (Gene tree)
Gene ID: 109614631
Gene Symbol: MBD4
Alias: MED1
Full Name: methyl-CpG binding domain 4%2C DNA glycosylase
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 5251 bases
Position: chrLG12:28313306-28318556
Accession: 109614631
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000038595	MBD	PF01429.19	6.7e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000029380	MBD4-201	3968	XM_020051668	ENSELUP00000038595	589 (aa)	XP_019907227	UPI0005772BAC

Gene Model

Click here to download ENSELUG00000018483's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000018483's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000018483	MBD4	84	48.932	ENSAPOG00000021668	mbd4	97	48.824	Acanthochromis_polyacanthus
ENSELUG00000018483	MBD4	84	50.392	ENSAOCG00000001157	mbd4	97	49.608	Amphiprion_ocellaris
ENSELUG00000018483	MBD4	84	50.784	ENSAPEG00000016131	mbd4	97	50.098	Amphiprion_percula
ENSELUG00000018483	MBD4	92	50.089	ENSATEG00000014594	MBD4	95	48.381	Anabas_testudineus
ENSELUG00000018483	MBD4	82	47.189	ENSGAFG00000016011	mbd4	98	46.573	Gambusia_affinis
ENSELUG00000018483	MBD4	82	45.635	ENSKMAG00000015015	mbd4	98	46.169	Kryptolebias_marmoratus
ENSELUG00000018483	MBD4	82	47.750	ENSLBEG00000005669	MBD4	86	47.082	Labrus_bergylta
ENSELUG00000018483	MBD4	83	40.706	ENSLOCG00000013054	MBD4	99	40.693	Lepisosteus_oculatus
ENSELUG00000018483	MBD4	84	50.969	ENSMALG00000021517	mbd4	88	49.905	Monopterus_albus
ENSELUG00000018483	MBD4	57	79.412	MGP_PahariEiJ_G0022511	-	55	79.412	Mus_pahari
ENSELUG00000018483	MBD4	82	49.020	ENSONIG00000017212	mbd4	97	59.425	Oreochromis_niloticus
ENSELUG00000018483	MBD4	60	65.580	ENSORLG00000011049	mbd4	98	48.262	Oryzias_latipes
ENSELUG00000018483	MBD4	60	66.787	ENSORLG00020020013	mbd4	99	49.899	Oryzias_latipes_hni
ENSELUG00000018483	MBD4	60	66.065	ENSORLG00015015342	mbd4	99	49.899	Oryzias_latipes_hsok
ENSELUG00000018483	MBD4	83	48.473	ENSOMEG00000008819	mbd4	92	49.187	Oryzias_melastigma
ENSELUG00000018483	MBD4	82	41.553	ENSOGAG00000010236	MBD4	72	77.647	Otolemur_garnettii
ENSELUG00000018483	MBD4	86	41.590	ENSPKIG00000012306	MBD4	78	41.590	Paramormyrops_kingsleyae
ENSELUG00000018483	MBD4	72	58.140	ENSPFOG00000014471	mbd4	98	58.140	Poecilia_formosa
ENSELUG00000018483	MBD4	83	47.200	ENSSFOG00015016292	mbd4	96	47.000	Scleropages_formosus
ENSELUG00000018483	MBD4	84	47.692	ENSSMAG00000013958	-	69	47.368	Scophthalmus_maximus
ENSELUG00000018483	MBD4	84	51.200	ENSSDUG00000001365	mbd4	95	50.800	Seriola_dumerili
ENSELUG00000018483	MBD4	74	45.598	ENSSLDG00000010295	MBD4	83	45.805	Seriola_lalandi_dorsalis
ENSELUG00000018483	MBD4	63	61.644	ENSTRUG00000010124	mbd4	82	61.644	Takifugu_rubripes
ENSELUG00000018483	MBD4	60	70.492	ENSTNIG00000017927	mbd4	83	70.492	Tetraodon_nigroviridis
ENSELUG00000018483	MBD4	53	77.457	ENSXETG00000026622	mbd4	68	77.457	Xenopus_tropicalis
ENSELUG00000018483	MBD4	82	47.590	ENSXMAG00000021129	mbd4	98	46.976	Xiphophorus_maculatus