EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSELUG00000018922 (Gene tree)
Gene ID
105006270
Gene Symbol
lsm3
Alias
-
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Esox_lucius
Status
putative
Strand
Plus strand
Length
4011 bases
Position
chrAZJR03000911.1:310438-314448
Accession
105006270
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSELUP00000019594LSMPF01423.224.3e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSELUT00000029787-968-ENSELUP00000019594102 (aa)-C1BZD7
Gene Model
Click here to download ENSELUG00000018922's gene model file
Pathways
Pathway IDPathway NameSource
els03018RNA degradationKEGG
els03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000018922's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSELUG00000018922lsm37436.000ENSELUG00000007792lsm58236.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSELUG00000018922lsm310096.078ENSG00000170860LSM310096.078Homo_sapiens
ENSELUG00000018922lsm310098.039ENSAPOG00000018947lsm310098.039Acanthochromis_polyacanthus
ENSELUG00000018922lsm310096.078ENSAMEG00000009405LSM310096.078Ailuropoda_melanoleuca
ENSELUG00000018922lsm310097.059ENSACIG00000004574lsm37197.059Amphilophus_citrinellus
ENSELUG00000018922lsm310098.039ENSAOCG00000007658lsm310098.039Amphiprion_ocellaris
ENSELUG00000018922lsm310098.039ENSAPEG00000018621lsm310098.039Amphiprion_percula
ENSELUG00000018922lsm310098.039ENSATEG00000005153lsm310098.039Anabas_testudineus
ENSELUG00000018922lsm39397.895ENSAPLG00000014499LSM310097.895Anas_platyrhynchos
ENSELUG00000018922lsm310097.059ENSACAG00000013503LSM310097.059Anolis_carolinensis
ENSELUG00000018922lsm310096.078ENSANAG00000034627LSM310096.078Aotus_nancymaae
ENSELUG00000018922lsm310092.157ENSANAG00000002903-10092.157Aotus_nancymaae
ENSELUG00000018922lsm39597.938ENSACLG00000001726-9497.938Astatotilapia_calliptera
ENSELUG00000018922lsm310099.020ENSAMXG00000041214lsm310099.020Astyanax_mexicanus
ENSELUG00000018922lsm39497.917ENSBTAG00000007363LSM310097.917Bos_taurus
ENSELUG00000018922lsm310071.569WBGene00003077lsm-310071.569Caenorhabditis_elegans
ENSELUG00000018922lsm310094.118ENSCAFG00000001760LSM310094.118Canis_familiaris
ENSELUG00000018922lsm310087.255ENSCAFG00020016680-10087.255Canis_lupus_dingo
ENSELUG00000018922lsm310094.118ENSCAFG00020021584-10094.118Canis_lupus_dingo
ENSELUG00000018922lsm310093.137ENSCAFG00020026452-10093.137Canis_lupus_dingo
ENSELUG00000018922lsm310085.981ENSCAFG00020020950-10085.981Canis_lupus_dingo
ENSELUG00000018922lsm310094.118ENSCAFG00020017266-10094.118Canis_lupus_dingo
ENSELUG00000018922lsm310096.078ENSCHIG00000024650LSM310096.078Capra_hircus
ENSELUG00000018922lsm310097.059ENSTSYG00000005204-10097.059Carlito_syrichta
ENSELUG00000018922lsm39978.218ENSTSYG00000028528-9978.218Carlito_syrichta
ENSELUG00000018922lsm39497.917ENSCAPG00000015760LSM310097.917Cavia_aperea
ENSELUG00000018922lsm310096.078ENSCPOG00000034071LSM310096.078Cavia_porcellus
ENSELUG00000018922lsm310096.078ENSCCAG00000019503-10096.078Cebus_capucinus
ENSELUG00000018922lsm310096.078ENSCCAG00000036499-10096.078Cebus_capucinus
ENSELUG00000018922lsm310076.471ENSCCAG00000032763-10076.471Cebus_capucinus
ENSELUG00000018922lsm39976.238ENSCATG00000031630-9976.238Cercocebus_atys
ENSELUG00000018922lsm310096.078ENSCATG00000039421LSM310096.078Cercocebus_atys
ENSELUG00000018922lsm310096.078ENSCLAG00000015997LSM310096.078Chinchilla_lanigera
ENSELUG00000018922lsm310091.176ENSCSAG00000019525-10091.176Chlorocebus_sabaeus
ENSELUG00000018922lsm310097.059ENSCPBG00000014531LSM310097.059Chrysemys_picta_bellii
ENSELUG00000018922lsm310081.731ENSCSAVG00000009542-10081.731Ciona_savignyi
ENSELUG00000018922lsm310093.137ENSCANG00000018782-10093.137Colobus_angolensis_palliatus
ENSELUG00000018922lsm310093.137ENSCANG00000038037-10093.137Colobus_angolensis_palliatus
ENSELUG00000018922lsm310096.078ENSCANG00000033944-10096.078Colobus_angolensis_palliatus
ENSELUG00000018922lsm310096.078ENSCGRG00001017598Lsm310096.078Cricetulus_griseus_chok1gshd
ENSELUG00000018922lsm39881.000ENSCGRG00001011396-10081.000Cricetulus_griseus_chok1gshd
ENSELUG00000018922lsm310072.816ENSCGRG00001008639-10072.816Cricetulus_griseus_chok1gshd
ENSELUG00000018922lsm310096.078ENSCGRG00000016159Lsm310096.078Cricetulus_griseus_crigri
ENSELUG00000018922lsm39383.158ENSCGRG00000012129-10083.158Cricetulus_griseus_crigri
ENSELUG00000018922lsm310098.039ENSCSEG00000015071lsm37798.039Cynoglossus_semilaevis
ENSELUG00000018922lsm310097.059ENSCVAG00000006933lsm310097.059Cyprinodon_variegatus
ENSELUG00000018922lsm310097.059ENSDARG00000089663lsm310097.059Danio_rerio
ENSELUG00000018922lsm310096.078ENSDNOG00000030808LSM310096.078Dasypus_novemcinctus
ENSELUG00000018922lsm310096.078ENSDORG00000006894-10096.078Dipodomys_ordii
ENSELUG00000018922lsm310076.471ENSDORG00000024490-10076.471Dipodomys_ordii
ENSELUG00000018922lsm310078.641FBgn0051184LSm310078.641Drosophila_melanogaster
ENSELUG00000018922lsm310096.078ENSETEG00000016207LSM310096.078Echinops_telfairi
ENSELUG00000018922lsm310089.216ENSEBUG00000004943lsm310089.216Eptatretus_burgeri
ENSELUG00000018922lsm310096.078ENSEASG00005015443LSM310096.078Equus_asinus_asinus
ENSELUG00000018922lsm310096.078ENSECAG00000007803LSM310096.078Equus_caballus
ENSELUG00000018922lsm310096.078ENSFCAG00000038453LSM310096.078Felis_catus
ENSELUG00000018922lsm310073.529ENSFCAG00000044344-10073.529Felis_catus
ENSELUG00000018922lsm310097.059ENSFALG00000012644LSM310097.059Ficedula_albicollis
ENSELUG00000018922lsm310096.078ENSFDAG00000011470LSM310096.078Fukomys_damarensis
ENSELUG00000018922lsm310098.039ENSFHEG00000000876lsm310098.039Fundulus_heteroclitus
ENSELUG00000018922lsm39396.842ENSGMOG00000011024lsm310096.842Gadus_morhua
ENSELUG00000018922lsm310098.039ENSGAFG00000013965lsm310098.039Gambusia_affinis
ENSELUG00000018922lsm310098.039ENSGACG00000003488lsm310098.039Gasterosteus_aculeatus
ENSELUG00000018922lsm310097.059ENSGAGG00000025707LSM310097.059Gopherus_agassizii
ENSELUG00000018922lsm310096.078ENSGGOG00000010006LSM310096.078Gorilla_gorilla
ENSELUG00000018922lsm310098.039ENSHBUG00000022399lsm310098.039Haplochromis_burtoni
ENSELUG00000018922lsm310096.078ENSHGLG00000000651LSM310096.078Heterocephalus_glaber_female
ENSELUG00000018922lsm310076.471ENSHGLG00000015564-10076.471Heterocephalus_glaber_female
ENSELUG00000018922lsm310076.471ENSHGLG00100010658-10076.471Heterocephalus_glaber_male
ENSELUG00000018922lsm310096.078ENSHGLG00100011343LSM310096.078Heterocephalus_glaber_male
ENSELUG00000018922lsm310097.059ENSHCOG00000013481lsm310097.059Hippocampus_comes
ENSELUG00000018922lsm310098.039ENSIPUG00000009207lsm310098.039Ictalurus_punctatus
ENSELUG00000018922lsm310096.078ENSSTOG00000006842LSM310096.078Ictidomys_tridecemlineatus
ENSELUG00000018922lsm39973.529ENSJJAG00000018311-10073.529Jaculus_jaculus
ENSELUG00000018922lsm310096.078ENSJJAG00000017351Lsm310096.078Jaculus_jaculus
ENSELUG00000018922lsm310087.255ENSJJAG00000012797-10087.255Jaculus_jaculus
ENSELUG00000018922lsm310097.059ENSKMAG00000015182lsm310097.059Kryptolebias_marmoratus
ENSELUG00000018922lsm39695.918ENSLBEG00000021292lsm310095.918Labrus_bergylta
ENSELUG00000018922lsm310097.059ENSLOCG00000013560lsm310097.059Lepisosteus_oculatus
ENSELUG00000018922lsm310095.146ENSLAFG00000023308LSM310095.146Loxodonta_africana
ENSELUG00000018922lsm310096.078ENSMFAG00000003185LSM310096.078Macaca_fascicularis
ENSELUG00000018922lsm310096.078ENSMMUG00000023126LSM310096.078Macaca_mulatta
ENSELUG00000018922lsm310073.529ENSMMUG00000043596-10073.529Macaca_mulatta
ENSELUG00000018922lsm39676.531ENSMMUG00000002294-9576.531Macaca_mulatta
ENSELUG00000018922lsm310096.078ENSMNEG00000043632LSM310096.078Macaca_nemestrina
ENSELUG00000018922lsm39978.218ENSMNEG00000037686-9978.218Macaca_nemestrina
ENSELUG00000018922lsm310096.078ENSMLEG00000036162LSM310096.078Mandrillus_leucophaeus
ENSELUG00000018922lsm310098.039ENSMAMG00000012807lsm310098.039Mastacembelus_armatus
ENSELUG00000018922lsm310098.039ENSMZEG00005016682lsm37398.039Maylandia_zebra
ENSELUG00000018922lsm39497.917ENSMGAG00000007776LSM310097.917Meleagris_gallopavo
ENSELUG00000018922lsm310081.373ENSMICG00000027821-10081.373Microcebus_murinus
ENSELUG00000018922lsm310095.098ENSMICG00000032361-10095.098Microcebus_murinus
ENSELUG00000018922lsm310096.078ENSMOCG00000014269Lsm310096.078Microtus_ochrogaster
ENSELUG00000018922lsm310097.059ENSMMOG00000020715lsm310097.059Mola_mola
ENSELUG00000018922lsm310095.098ENSMODG00000007275LSM310095.098Monodelphis_domestica
ENSELUG00000018922lsm310098.039ENSMALG00000006485lsm310098.039Monopterus_albus
ENSELUG00000018922lsm310096.078ENSMUSG00000034192Lsm310096.078Mus_musculus
ENSELUG00000018922lsm310096.078MGP_PahariEiJ_G0022402Lsm310096.078Mus_pahari
ENSELUG00000018922lsm310096.078MGP_SPRETEiJ_G0029681Lsm310096.078Mus_spretus
ENSELUG00000018922lsm38388.235ENSMPUG00000017256-10088.235Mustela_putorius_furo
ENSELUG00000018922lsm39784.848ENSMPUG00000019120-9784.848Mustela_putorius_furo
ENSELUG00000018922lsm310096.078ENSMLUG00000010677LSM310096.078Myotis_lucifugus
ENSELUG00000018922lsm310091.176ENSMLUG00000024700-10091.176Myotis_lucifugus
ENSELUG00000018922lsm310096.078ENSNGAG00000022450Lsm310096.078Nannospalax_galili
ENSELUG00000018922lsm310070.588ENSNGAG00000013716-10070.588Nannospalax_galili
ENSELUG00000018922lsm39978.218ENSNGAG00000010207-9978.218Nannospalax_galili
ENSELUG00000018922lsm310098.039ENSNBRG00000014318lsm310098.039Neolamprologus_brichardi
ENSELUG00000018922lsm310087.255ENSNLEG00000030229-10087.255Nomascus_leucogenys
ENSELUG00000018922lsm310096.078ENSNLEG00000005079LSM310096.078Nomascus_leucogenys
ENSELUG00000018922lsm310094.118ENSODEG00000019158-10094.118Octodon_degus
ENSELUG00000018922lsm310095.098ENSODEG00000019740-10095.098Octodon_degus
ENSELUG00000018922lsm310089.216ENSODEG00000019403-10089.216Octodon_degus
ENSELUG00000018922lsm310096.078ENSODEG00000001726LSM310096.078Octodon_degus
ENSELUG00000018922lsm310098.039ENSONIG00000000370lsm310098.039Oreochromis_niloticus
ENSELUG00000018922lsm310098.039ENSONIG00000021369-10098.039Oreochromis_niloticus
ENSELUG00000018922lsm310095.098ENSOANG00000012273LSM310095.098Ornithorhynchus_anatinus
ENSELUG00000018922lsm310092.157ENSOCUG00000011088-10092.157Oryctolagus_cuniculus
ENSELUG00000018922lsm310096.078ENSOCUG00000027653-10096.078Oryctolagus_cuniculus
ENSELUG00000018922lsm310096.078ENSORLG00000025900lsm310096.078Oryzias_latipes
ENSELUG00000018922lsm310096.078ENSORLG00020007125lsm310096.078Oryzias_latipes_hni
ENSELUG00000018922lsm310096.078ENSORLG00015002944lsm310096.078Oryzias_latipes_hsok
ENSELUG00000018922lsm310096.078ENSOMEG00000001915lsm310096.078Oryzias_melastigma
ENSELUG00000018922lsm39694.898ENSOGAG00000028858-10094.898Otolemur_garnettii
ENSELUG00000018922lsm310086.275ENSOGAG00000033051-10086.275Otolemur_garnettii
ENSELUG00000018922lsm310096.078ENSOGAG00000007659-10096.078Otolemur_garnettii
ENSELUG00000018922lsm310095.146ENSOARG00000000600LSM310095.146Ovis_aries
ENSELUG00000018922lsm310096.078ENSPPAG00000034074LSM310096.078Pan_paniscus
ENSELUG00000018922lsm39988.119ENSPPRG00000010610-8988.119Panthera_pardus
ENSELUG00000018922lsm310096.078ENSPPRG00000012912-10096.078Panthera_pardus
ENSELUG00000018922lsm310095.098ENSPPRG00000020953-10095.098Panthera_pardus
ENSELUG00000018922lsm310096.078ENSPTIG00000013072-10096.078Panthera_tigris_altaica
ENSELUG00000018922lsm310096.078ENSPTIG00000003463-10096.078Panthera_tigris_altaica
ENSELUG00000018922lsm310096.078ENSPTRG00000014650LSM310096.078Pan_troglodytes
ENSELUG00000018922lsm310096.078ENSPANG00000009378LSM310096.078Papio_anubis
ENSELUG00000018922lsm310074.510ENSPANG00000032192-10074.510Papio_anubis
ENSELUG00000018922lsm310098.039ENSPKIG00000008037lsm39198.039Paramormyrops_kingsleyae
ENSELUG00000018922lsm310097.059ENSPSIG00000015720LSM310097.059Pelodiscus_sinensis
ENSELUG00000018922lsm39593.814ENSPMGG00000012103lsm39893.814Periophthalmus_magnuspinnatus
ENSELUG00000018922lsm310080.392ENSPEMG00000020213-10080.392Peromyscus_maniculatus_bairdii
ENSELUG00000018922lsm310096.078ENSPEMG00000015797Lsm310096.078Peromyscus_maniculatus_bairdii
ENSELUG00000018922lsm310098.039ENSPFOG00000008372lsm310098.039Poecilia_formosa
ENSELUG00000018922lsm310098.039ENSPLAG00000000563lsm310098.039Poecilia_latipinna
ENSELUG00000018922lsm310098.039ENSPMEG00000022052lsm310098.039Poecilia_mexicana
ENSELUG00000018922lsm310098.039ENSPREG00000022485lsm310098.039Poecilia_reticulata
ENSELUG00000018922lsm310096.078ENSPPYG00000013402LSM310096.078Pongo_abelii
ENSELUG00000018922lsm310096.078ENSPCAG00000017077LSM310096.078Procavia_capensis
ENSELUG00000018922lsm39475.000ENSPCOG00000014435-9875.000Propithecus_coquereli
ENSELUG00000018922lsm310095.098ENSPCOG00000016217-10095.098Propithecus_coquereli
ENSELUG00000018922lsm310096.078ENSPVAG00000016795LSM310096.078Pteropus_vampyrus
ENSELUG00000018922lsm310098.039ENSPNYG00000009552lsm37398.039Pundamilia_nyererei
ENSELUG00000018922lsm310099.020ENSPNAG00000023467lsm310099.020Pygocentrus_nattereri
ENSELUG00000018922lsm310096.078ENSRNOG00000008733Lsm310096.078Rattus_norvegicus
ENSELUG00000018922lsm310096.078ENSRBIG00000034399LSM310096.078Rhinopithecus_bieti
ENSELUG00000018922lsm310080.392ENSRBIG00000043783-10080.392Rhinopithecus_bieti
ENSELUG00000018922lsm310085.294ENSRROG00000044047-10085.294Rhinopithecus_roxellana
ENSELUG00000018922lsm310096.078ENSRROG00000033276-10096.078Rhinopithecus_roxellana
ENSELUG00000018922lsm310081.373ENSRROG00000039868-10081.373Rhinopithecus_roxellana
ENSELUG00000018922lsm310077.451ENSRROG00000044056-10077.451Rhinopithecus_roxellana
ENSELUG00000018922lsm310096.078ENSSBOG00000024310LSM310096.078Saimiri_boliviensis_boliviensis
ENSELUG00000018922lsm310099.020ENSSFOG00015007071lsm310099.020Scleropages_formosus
ENSELUG00000018922lsm310098.039ENSSMAG00000001818lsm310098.039Scophthalmus_maximus
ENSELUG00000018922lsm310098.039ENSSDUG00000006040lsm310098.039Seriola_dumerili
ENSELUG00000018922lsm310098.039ENSSLDG00000006399lsm310098.039Seriola_lalandi_dorsalis
ENSELUG00000018922lsm35798.276ENSSARG00000005275-10098.276Sorex_araneus
ENSELUG00000018922lsm310087.255ENSSPUG00000005394LSM310087.255Sphenodon_punctatus
ENSELUG00000018922lsm39397.895ENSSPUG00000017047-9997.895Sphenodon_punctatus
ENSELUG00000018922lsm310086.275ENSSPAG00000000934lsm310086.275Stegastes_partitus
ENSELUG00000018922lsm39573.196ENSSSCG00000023718-9973.196Sus_scrofa
ENSELUG00000018922lsm310096.078ENSSSCG00000011601LSM310096.078Sus_scrofa
ENSELUG00000018922lsm310097.059ENSTGUG00000008327LSM310097.059Taeniopygia_guttata
ENSELUG00000018922lsm310097.059ENSTRUG00000023175lsm310097.059Takifugu_rubripes
ENSELUG00000018922lsm310097.059ENSTNIG00000005589lsm310097.059Tetraodon_nigroviridis
ENSELUG00000018922lsm310086.275ENSTBEG00000001050-9986.275Tupaia_belangeri
ENSELUG00000018922lsm310096.078ENSTTRG00000011197LSM310096.078Tursiops_truncatus
ENSELUG00000018922lsm310096.078ENSUAMG00000017250-10096.078Ursus_americanus
ENSELUG00000018922lsm310096.078ENSUMAG00000015905LSM310096.078Ursus_maritimus
ENSELUG00000018922lsm39397.895ENSVPAG00000010709LSM310097.895Vicugna_pacos
ENSELUG00000018922lsm310087.255ENSVVUG00000024228-10087.255Vulpes_vulpes
ENSELUG00000018922lsm310091.176ENSVVUG00000006481-10091.176Vulpes_vulpes
ENSELUG00000018922lsm310090.196ENSVVUG00000005684-10090.196Vulpes_vulpes
ENSELUG00000018922lsm310092.157ENSVVUG00000029294-10092.157Vulpes_vulpes
ENSELUG00000018922lsm310092.157ENSVVUG00000007332-9192.157Vulpes_vulpes
ENSELUG00000018922lsm310096.078ENSXETG00000011534lsm310096.078Xenopus_tropicalis
ENSELUG00000018922lsm310098.039ENSXCOG00000017432LSM310098.039Xiphophorus_couchianus
ENSELUG00000018922lsm310098.039ENSXMAG00000009151lsm310098.039Xiphophorus_maculatus

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