EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000018944 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 11577 bases
Position: chrLG03:8065235-8076811
Accession: 105023958
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000019563	ResIII	PF04851.15	1.6e-10	1	1
ENSELUP00000019510	ResIII	PF04851.15	9.2e-09	1	1
ENSELUP00000019563	DEAD	PF00270.29	3.5e-27	1	1
ENSELUP00000019510	DEAD	PF00270.29	1.3e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000029751	-	2802	-	ENSELUP00000019563	933 (aa)	-	-
ENSELUT00000029669	-	2610	XM_013132480	ENSELUP00000019510	870 (aa)	XP_012987934	-

Gene Model

Click here to download ENSELUG00000018944's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000018944's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000018944	hfm1	72	37.143	ENSELUG00000023441	ascc3	59	33.853
ENSELUG00000018944	hfm1	88	30.872	ENSELUG00000018948	snrnp200	72	31.099

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000018944	hfm1	99	66.744	ENSG00000162669	HFM1	64	66.744	Homo_sapiens
ENSELUG00000018944	hfm1	98	79.814	ENSAPOG00000005304	hfm1	100	79.814	Acanthochromis_polyacanthus
ENSELUG00000018944	hfm1	97	67.838	ENSAMEG00000000432	HFM1	63	67.838	Ailuropoda_melanoleuca
ENSELUG00000018944	hfm1	87	82.165	ENSACIG00000021553	hfm1	75	82.165	Amphilophus_citrinellus
ENSELUG00000018944	hfm1	98	81.141	ENSAOCG00000022839	hfm1	100	81.141	Amphiprion_ocellaris
ENSELUG00000018944	hfm1	98	80.908	ENSAPEG00000014316	hfm1	100	80.908	Amphiprion_percula
ENSELUG00000018944	hfm1	97	78.060	ENSATEG00000019181	hfm1	75	76.834	Anabas_testudineus
ENSELUG00000018944	hfm1	97	67.215	ENSAPLG00000013639	HFM1	63	67.215	Anas_platyrhynchos
ENSELUG00000018944	hfm1	97	66.228	ENSANAG00000029513	HFM1	62	66.228	Aotus_nancymaae
ENSELUG00000018944	hfm1	98	75.584	ENSACLG00000009033	hfm1	99	75.584	Astatotilapia_calliptera
ENSELUG00000018944	hfm1	99	76.190	ENSAMXG00000006108	hfm1	64	75.599	Astyanax_mexicanus
ENSELUG00000018944	hfm1	97	67.473	ENSBTAG00000020856	HFM1	63	67.473	Bos_taurus
ENSELUG00000018944	hfm1	99	66.319	ENSCJAG00000001843	HFM1	64	66.319	Callithrix_jacchus
ENSELUG00000018944	hfm1	97	67.363	ENSCAFG00000020187	HFM1	63	67.363	Canis_familiaris
ENSELUG00000018944	hfm1	97	66.301	ENSTSYG00000014250	HFM1	63	66.301	Carlito_syrichta
ENSELUG00000018944	hfm1	97	67.143	ENSCPOG00000007421	HFM1	64	67.143	Cavia_porcellus
ENSELUG00000018944	hfm1	97	66.630	ENSCCAG00000033206	HFM1	63	66.630	Cebus_capucinus
ENSELUG00000018944	hfm1	99	66.165	ENSCATG00000030987	HFM1	64	66.165	Cercocebus_atys
ENSELUG00000018944	hfm1	97	66.593	ENSCLAG00000005173	HFM1	61	66.593	Chinchilla_lanigera
ENSELUG00000018944	hfm1	76	53.296	ENSCSAVG00000005094	-	100	54.457	Ciona_savignyi
ENSELUG00000018944	hfm1	94	62.613	ENSCGRG00001016995	Hfm1	62	62.613	Cricetulus_griseus_chok1gshd
ENSELUG00000018944	hfm1	97	64.978	ENSCGRG00000017181	Hfm1	63	64.978	Cricetulus_griseus_crigri
ENSELUG00000018944	hfm1	97	74.373	ENSCSEG00000017659	hfm1	84	74.482	Cynoglossus_semilaevis
ENSELUG00000018944	hfm1	76	78.200	ENSCVAG00000005075	hfm1	86	78.200	Cyprinodon_variegatus
ENSELUG00000018944	hfm1	100	75.152	ENSDARG00000104288	hfm1	82	75.152	Danio_rerio
ENSELUG00000018944	hfm1	97	66.186	ENSDNOG00000004776	HFM1	60	66.186	Dasypus_novemcinctus
ENSELUG00000018944	hfm1	97	65.443	ENSDORG00000014661	Hfm1	63	65.443	Dipodomys_ordii
ENSELUG00000018944	hfm1	95	65.583	ENSEASG00005015424	HFM1	84	65.583	Equus_asinus_asinus
ENSELUG00000018944	hfm1	97	67.473	ENSECAG00000024039	HFM1	61	67.473	Equus_caballus
ENSELUG00000018944	hfm1	98	67.728	ENSFCAG00000029116	HFM1	63	67.728	Felis_catus
ENSELUG00000018944	hfm1	97	67.654	ENSFALG00000001781	HFM1	63	67.654	Ficedula_albicollis
ENSELUG00000018944	hfm1	97	66.593	ENSFDAG00000020816	HFM1	61	66.593	Fukomys_damarensis
ENSELUG00000018944	hfm1	97	72.946	ENSGMOG00000017436	hfm1	94	72.946	Gadus_morhua
ENSELUG00000018944	hfm1	97	75.406	ENSGAFG00000018093	hfm1	100	75.406	Gambusia_affinis
ENSELUG00000018944	hfm1	97	73.591	ENSGACG00000015686	hfm1	93	73.591	Gasterosteus_aculeatus
ENSELUG00000018944	hfm1	99	66.744	ENSGGOG00000038524	HFM1	64	66.744	Gorilla_gorilla
ENSELUG00000018944	hfm1	97	74.945	ENSHBUG00000007309	hfm1	84	74.945	Haplochromis_burtoni
ENSELUG00000018944	hfm1	97	73.349	ENSHCOG00000019632	hfm1	100	73.349	Hippocampus_comes
ENSELUG00000018944	hfm1	99	75.538	ENSIPUG00000017020	hfm1	99	75.538	Ictalurus_punctatus
ENSELUG00000018944	hfm1	97	66.374	ENSJJAG00000017198	Hfm1	64	66.374	Jaculus_jaculus
ENSELUG00000018944	hfm1	96	72.907	ENSKMAG00000002282	hfm1	90	72.907	Kryptolebias_marmoratus
ENSELUG00000018944	hfm1	98	76.251	ENSLBEG00000006759	hfm1	99	76.251	Labrus_bergylta
ENSELUG00000018944	hfm1	97	69.197	ENSLACG00000010698	HFM1	85	69.307	Latimeria_chalumnae
ENSELUG00000018944	hfm1	97	73.575	ENSLOCG00000004931	hfm1	83	73.333	Lepisosteus_oculatus
ENSELUG00000018944	hfm1	72	72.552	ENSLAFG00000015903	-	90	72.552	Loxodonta_africana
ENSELUG00000018944	hfm1	99	64.186	ENSMFAG00000003649	HFM1	64	64.186	Macaca_fascicularis
ENSELUG00000018944	hfm1	99	66.396	ENSMMUG00000006819	HFM1	64	66.396	Macaca_mulatta
ENSELUG00000018944	hfm1	98	76.601	ENSMAMG00000004623	hfm1	100	76.601	Mastacembelus_armatus
ENSELUG00000018944	hfm1	98	75.584	ENSMZEG00005004679	hfm1	99	75.584	Maylandia_zebra
ENSELUG00000018944	hfm1	83	67.917	ENSMGAG00000008437	HFM1	96	67.917	Meleagris_gallopavo
ENSELUG00000018944	hfm1	97	65.419	ENSMAUG00000018858	Hfm1	63	65.419	Mesocricetus_auratus
ENSELUG00000018944	hfm1	97	66.886	ENSMICG00000037935	HFM1	63	66.886	Microcebus_murinus
ENSELUG00000018944	hfm1	97	65.567	ENSMOCG00000014812	Hfm1	63	65.567	Microtus_ochrogaster
ENSELUG00000018944	hfm1	99	78.136	ENSMMOG00000006148	hfm1	100	78.136	Mola_mola
ENSELUG00000018944	hfm1	98	79.535	ENSMALG00000002401	hfm1	100	79.535	Monopterus_albus
ENSELUG00000018944	hfm1	89	76.860	MGP_CAROLIEiJ_G0027496	Hfm1	58	76.860	Mus_caroli
ENSELUG00000018944	hfm1	97	64.978	ENSMUSG00000043410	Hfm1	63	64.978	Mus_musculus
ENSELUG00000018944	hfm1	97	65.165	MGP_PahariEiJ_G0017268	Hfm1	63	65.165	Mus_pahari
ENSELUG00000018944	hfm1	97	65.308	MGP_SPRETEiJ_G0028495	Hfm1	63	65.308	Mus_spretus
ENSELUG00000018944	hfm1	97	68.018	ENSMPUG00000004594	HFM1	61	68.018	Mustela_putorius_furo
ENSELUG00000018944	hfm1	97	66.484	ENSMLUG00000010200	HFM1	63	66.484	Myotis_lucifugus
ENSELUG00000018944	hfm1	98	75.584	ENSNBRG00000002910	hfm1	99	75.584	Neolamprologus_brichardi
ENSELUG00000018944	hfm1	97	65.414	ENSNLEG00000010285	HFM1	62	65.414	Nomascus_leucogenys
ENSELUG00000018944	hfm1	89	62.185	ENSMEUG00000015788	HFM1	57	62.185	Notamacropus_eugenii
ENSELUG00000018944	hfm1	92	62.455	ENSOPRG00000013916	HFM1	61	61.397	Ochotona_princeps
ENSELUG00000018944	hfm1	97	76.362	ENSONIG00000010590	hfm1	87	76.362	Oreochromis_niloticus
ENSELUG00000018944	hfm1	90	77.834	ENSORLG00000026844	hfm1	99	77.834	Oryzias_latipes
ENSELUG00000018944	hfm1	99	65.947	ENSORLG00020002951	hfm1	70	65.947	Oryzias_latipes_hni
ENSELUG00000018944	hfm1	99	73.981	ENSOMEG00000016474	hfm1	62	73.981	Oryzias_melastigma
ENSELUG00000018944	hfm1	97	67.105	ENSOGAG00000032369	HFM1	74	67.105	Otolemur_garnettii
ENSELUG00000018944	hfm1	97	67.728	ENSOARG00000015812	HFM1	63	67.728	Ovis_aries
ENSELUG00000018944	hfm1	99	66.975	ENSPPAG00000024582	HFM1	70	67.130	Pan_paniscus
ENSELUG00000018944	hfm1	98	67.728	ENSPPRG00000003270	HFM1	63	67.728	Panthera_pardus
ENSELUG00000018944	hfm1	98	67.838	ENSPTIG00000018881	HFM1	63	67.838	Panthera_tigris_altaica
ENSELUG00000018944	hfm1	99	66.859	ENSPTRG00000000948	HFM1	64	66.859	Pan_troglodytes
ENSELUG00000018944	hfm1	99	66.280	ENSPANG00000009838	HFM1	64	66.280	Papio_anubis
ENSELUG00000018944	hfm1	97	74.468	ENSPKIG00000003810	hfm1	99	74.468	Paramormyrops_kingsleyae
ENSELUG00000018944	hfm1	91	76.345	ENSPMGG00000011059	hfm1	100	76.345	Periophthalmus_magnuspinnatus
ENSELUG00000018944	hfm1	97	65.639	ENSPEMG00000022852	Hfm1	63	65.639	Peromyscus_maniculatus_bairdii
ENSELUG00000018944	hfm1	97	66.995	ENSPCIG00000014233	HFM1	61	66.995	Phascolarctos_cinereus
ENSELUG00000018944	hfm1	97	74.452	ENSPFOG00000017194	hfm1	86	74.452	Poecilia_formosa
ENSELUG00000018944	hfm1	97	74.561	ENSPLAG00000000571	hfm1	82	74.561	Poecilia_latipinna
ENSELUG00000018944	hfm1	97	74.536	ENSPMEG00000019475	hfm1	83	74.536	Poecilia_mexicana
ENSELUG00000018944	hfm1	97	75.698	ENSPREG00000007803	hfm1	100	75.000	Poecilia_reticulata
ENSELUG00000018944	hfm1	97	67.069	ENSPPYG00000001163	HFM1	63	67.069	Pongo_abelii
ENSELUG00000018944	hfm1	97	60.879	ENSPVAG00000009713	HFM1	64	60.879	Pteropus_vampyrus
ENSELUG00000018944	hfm1	98	75.467	ENSPNYG00000001795	hfm1	99	75.467	Pundamilia_nyererei
ENSELUG00000018944	hfm1	99	77.014	ENSPNAG00000010865	hfm1	92	77.014	Pygocentrus_nattereri
ENSELUG00000018944	hfm1	97	65.677	ENSRNOG00000023299	Hfm1	63	65.677	Rattus_norvegicus
ENSELUG00000018944	hfm1	99	66.166	ENSRROG00000045569	HFM1	64	66.166	Rhinopithecus_roxellana
ENSELUG00000018944	hfm1	97	66.959	ENSSBOG00000027456	HFM1	64	66.959	Saimiri_boliviensis_boliviensis
ENSELUG00000018944	hfm1	63	72.635	ENSSHAG00000014616	-	67	72.635	Sarcophilus_harrisii
ENSELUG00000018944	hfm1	99	76.905	ENSSFOG00015020129	hfm1	61	76.905	Scleropages_formosus
ENSELUG00000018944	hfm1	97	77.228	ENSSMAG00000006907	hfm1	89	76.356	Scophthalmus_maximus
ENSELUG00000018944	hfm1	98	80.233	ENSSDUG00000011424	hfm1	100	80.233	Seriola_dumerili
ENSELUG00000018944	hfm1	98	79.885	ENSSLDG00000016386	hfm1	100	79.885	Seriola_lalandi_dorsalis
ENSELUG00000018944	hfm1	98	80.930	ENSSPAG00000001023	hfm1	100	80.930	Stegastes_partitus
ENSELUG00000018944	hfm1	98	67.830	ENSSSCG00000006912	HFM1	66	67.830	Sus_scrofa
ENSELUG00000018944	hfm1	97	67.255	ENSTGUG00000006172	HFM1	94	67.255	Taeniopygia_guttata
ENSELUG00000018944	hfm1	54	76.483	ENSTNIG00000006962	hfm1	97	76.483	Tetraodon_nigroviridis
ENSELUG00000018944	hfm1	97	67.143	ENSTTRG00000013933	HFM1	64	67.143	Tursiops_truncatus
ENSELUG00000018944	hfm1	97	65.934	ENSVPAG00000011331	HFM1	63	65.934	Vicugna_pacos
ENSELUG00000018944	hfm1	95	65.320	ENSVVUG00000020760	HFM1	85	65.320	Vulpes_vulpes
ENSELUG00000018944	hfm1	97	75.057	ENSXMAG00000004178	hfm1	100	75.057	Xiphophorus_maculatus