EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000019459 (Gene tree)
Gene ID: -
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 50337 bases
Position: chrLG16:31842521-31892857
Accession: 105029280
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000039339	CMS1	PF14617.6	8.9e-36	1	1
ENSELUP00000039339	DEAD	PF00270.29	2.9e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000030563	-	2894	XM_013137782	ENSELUP00000039339	300 (aa)	XP_012993236	-

Gene Model

Click here to download ENSELUG00000019459's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000019459's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000019459	cmss1	100	52.000	ENSG00000184220	CMSS1	98	63.750	Homo_sapiens
ENSELUG00000019459	cmss1	68	77.340	ENSAPOG00000010604	cmss1	96	66.023	Acanthochromis_polyacanthus
ENSELUG00000019459	cmss1	80	58.091	ENSAMEG00000004092	CMSS1	93	58.091	Ailuropoda_melanoleuca
ENSELUG00000019459	cmss1	68	66.010	ENSACIG00000021854	cmss1	98	58.846	Amphilophus_citrinellus
ENSELUG00000019459	cmss1	100	63.455	ENSAOCG00000013361	cmss1	100	63.123	Amphiprion_ocellaris
ENSELUG00000019459	cmss1	100	61.056	ENSAPEG00000005829	cmss1	100	61.921	Amphiprion_percula
ENSELUG00000019459	cmss1	100	60.396	ENSATEG00000008209	cmss1	100	59.539	Anabas_testudineus
ENSELUG00000019459	cmss1	75	59.292	ENSAPLG00000010542	CMSS1	98	59.292	Anas_platyrhynchos
ENSELUG00000019459	cmss1	91	53.430	ENSACAG00000011065	CMSS1	74	61.386	Anolis_carolinensis
ENSELUG00000019459	cmss1	100	50.667	ENSANAG00000023565	CMSS1	100	47.896	Aotus_nancymaae
ENSELUG00000019459	cmss1	100	60.066	ENSACLG00000027294	cmss1	100	60.265	Astatotilapia_calliptera
ENSELUG00000019459	cmss1	100	56.250	ENSAMXG00000002046	cmss1	100	55.592	Astyanax_mexicanus
ENSELUG00000019459	cmss1	100	50.333	ENSBTAG00000013663	CMSS1	100	50.333	Bos_taurus
ENSELUG00000019459	cmss1	100	51.000	ENSCJAG00000000610	CMSS1	100	51.000	Callithrix_jacchus
ENSELUG00000019459	cmss1	80	58.750	ENSCAFG00000009230	CMSS1	87	58.750	Canis_familiaris
ENSELUG00000019459	cmss1	67	61.881	ENSCAFG00020024156	-	63	61.881	Canis_lupus_dingo
ENSELUG00000019459	cmss1	80	58.750	ENSCAFG00020009464	-	87	58.750	Canis_lupus_dingo
ENSELUG00000019459	cmss1	81	57.202	ENSCHIG00000013003	CMSS1	87	57.202	Capra_hircus
ENSELUG00000019459	cmss1	80	58.333	ENSTSYG00000009266	CMSS1	92	58.333	Carlito_syrichta
ENSELUG00000019459	cmss1	74	49.550	ENSCAPG00000013584	CMSS1	88	54.011	Cavia_aperea
ENSELUG00000019459	cmss1	100	51.667	ENSCPOG00000014680	CMSS1	100	50.658	Cavia_porcellus
ENSELUG00000019459	cmss1	100	51.667	ENSCCAG00000034685	CMSS1	91	57.917	Cebus_capucinus
ENSELUG00000019459	cmss1	100	51.333	ENSCATG00000031980	CMSS1	100	50.000	Cercocebus_atys
ENSELUG00000019459	cmss1	75	60.177	ENSCLAG00000011241	CMSS1	87	62.871	Chinchilla_lanigera
ENSELUG00000019459	cmss1	80	57.500	ENSCSAG00000006024	CMSS1	98	57.500	Chlorocebus_sabaeus
ENSELUG00000019459	cmss1	100	38.333	ENSCHOG00000012098	CMSS1	100	36.275	Choloepus_hoffmanni
ENSELUG00000019459	cmss1	75	38.865	ENSCING00000014848	-	96	43.889	Ciona_intestinalis
ENSELUG00000019459	cmss1	100	51.333	ENSCANG00000031337	CMSS1	92	57.500	Colobus_angolensis_palliatus
ENSELUG00000019459	cmss1	100	52.333	ENSCGRG00001014305	Cmss1	100	50.993	Cricetulus_griseus_chok1gshd
ENSELUG00000019459	cmss1	81	58.848	ENSCGRG00000006722	Cmss1	79	62.871	Cricetulus_griseus_crigri
ENSELUG00000019459	cmss1	100	58.824	ENSCSEG00000004958	cmss1	100	58.170	Cynoglossus_semilaevis
ENSELUG00000019459	cmss1	100	56.954	ENSCVAG00000005039	cmss1	100	58.416	Cyprinodon_variegatus
ENSELUG00000019459	cmss1	100	58.361	ENSDARG00000112579	cmss1	100	58.033	Danio_rerio
ENSELUG00000019459	cmss1	77	58.442	ENSDNOG00000040418	CMSS1	73	62.376	Dasypus_novemcinctus
ENSELUG00000019459	cmss1	100	50.667	ENSDORG00000010461	Cmss1	100	50.000	Dipodomys_ordii
ENSELUG00000019459	cmss1	82	55.918	ENSEASG00005010966	CMSS1	92	61.881	Equus_asinus_asinus
ENSELUG00000019459	cmss1	80	56.250	ENSECAG00000015662	CMSS1	89	61.386	Equus_caballus
ENSELUG00000019459	cmss1	67	43.000	ENSEEUG00000007624	-	73	43.564	Erinaceus_europaeus
ENSELUG00000019459	cmss1	100	52.333	ENSFCAG00000044577	CMSS1	100	50.667	Felis_catus
ENSELUG00000019459	cmss1	75	59.292	ENSFALG00000005816	CMSS1	85	61.386	Ficedula_albicollis
ENSELUG00000019459	cmss1	75	60.619	ENSFDAG00000012577	CMSS1	89	62.871	Fukomys_damarensis
ENSELUG00000019459	cmss1	76	69.099	ENSFHEG00000012008	cmss1	84	73.892	Fundulus_heteroclitus
ENSELUG00000019459	cmss1	99	58.923	ENSGMOG00000016729	cmss1	73	73.399	Gadus_morhua
ENSELUG00000019459	cmss1	92	52.708	ENSGALG00000015267	CMSS1	77	61.881	Gallus_gallus
ENSELUG00000019459	cmss1	69	72.947	ENSGAFG00000021217	cmss1	98	63.077	Gambusia_affinis
ENSELUG00000019459	cmss1	99	57.718	ENSGACG00000002798	cmss1	100	58.054	Gasterosteus_aculeatus
ENSELUG00000019459	cmss1	91	54.044	ENSGAGG00000019861	CMSS1	79	62.376	Gopherus_agassizii
ENSELUG00000019459	cmss1	80	57.917	ENSGGOG00000014125	CMSS1	91	57.917	Gorilla_gorilla
ENSELUG00000019459	cmss1	100	60.797	ENSHBUG00000008431	cmss1	100	60.797	Haplochromis_burtoni
ENSELUG00000019459	cmss1	79	59.746	ENSHGLG00000019481	CMSS1	82	62.871	Heterocephalus_glaber_female
ENSELUG00000019459	cmss1	79	59.746	ENSHGLG00100010314	CMSS1	81	62.871	Heterocephalus_glaber_male
ENSELUG00000019459	cmss1	100	55.238	ENSHCOG00000003222	cmss1	100	57.616	Hippocampus_comes
ENSELUG00000019459	cmss1	100	59.667	ENSIPUG00000011591	cmss1	100	60.265	Ictalurus_punctatus
ENSELUG00000019459	cmss1	100	52.667	ENSSTOG00000019366	CMSS1	100	50.166	Ictidomys_tridecemlineatus
ENSELUG00000019459	cmss1	100	52.318	ENSJJAG00000014894	Cmss1	90	62.376	Jaculus_jaculus
ENSELUG00000019459	cmss1	68	64.532	ENSKMAG00000002390	cmss1	82	64.532	Kryptolebias_marmoratus
ENSELUG00000019459	cmss1	68	67.647	ENSLBEG00000006298	cmss1	83	67.647	Labrus_bergylta
ENSELUG00000019459	cmss1	75	59.471	ENSLACG00000009293	CMSS1	88	61.386	Latimeria_chalumnae
ENSELUG00000019459	cmss1	100	50.333	ENSLOCG00000009391	cmss1	100	50.667	Lepisosteus_oculatus
ENSELUG00000019459	cmss1	75	59.735	ENSLAFG00000017509	CMSS1	89	60.891	Loxodonta_africana
ENSELUG00000019459	cmss1	100	51.000	ENSMFAG00000045006	CMSS1	92	57.083	Macaca_fascicularis
ENSELUG00000019459	cmss1	100	50.667	ENSMMUG00000002939	CMSS1	92	56.667	Macaca_mulatta
ENSELUG00000019459	cmss1	100	50.667	ENSMNEG00000031315	CMSS1	92	56.667	Macaca_nemestrina
ENSELUG00000019459	cmss1	100	51.000	ENSMLEG00000033660	CMSS1	92	57.083	Mandrillus_leucophaeus
ENSELUG00000019459	cmss1	100	61.056	ENSMAMG00000017176	cmss1	100	60.927	Mastacembelus_armatus
ENSELUG00000019459	cmss1	100	60.066	ENSMZEG00005021886	cmss1	100	60.265	Maylandia_zebra
ENSELUG00000019459	cmss1	67	61.881	ENSMGAG00000014360	CMSS1	89	61.881	Meleagris_gallopavo
ENSELUG00000019459	cmss1	100	38.667	ENSMAUG00000020609	Cmss1	100	37.333	Mesocricetus_auratus
ENSELUG00000019459	cmss1	100	52.333	ENSMICG00000048977	CMSS1	100	50.333	Microcebus_murinus
ENSELUG00000019459	cmss1	100	51.475	ENSMOCG00000021937	Cmss1	100	49.836	Microtus_ochrogaster
ENSELUG00000019459	cmss1	68	69.458	ENSMMOG00000019794	cmss1	84	69.458	Mola_mola
ENSELUG00000019459	cmss1	75	58.850	ENSMODG00000002275	CMSS1	76	59.901	Monodelphis_domestica
ENSELUG00000019459	cmss1	100	63.725	ENSMALG00000004250	cmss1	100	63.072	Monopterus_albus
ENSELUG00000019459	cmss1	100	51.475	MGP_CAROLIEiJ_G0020824	Cmss1	100	50.333	Mus_caroli
ENSELUG00000019459	cmss1	100	50.820	ENSMUSG00000022748	Cmss1	100	49.667	Mus_musculus
ENSELUG00000019459	cmss1	100	51.148	MGP_PahariEiJ_G0016524	Cmss1	100	50.820	Mus_pahari
ENSELUG00000019459	cmss1	100	50.820	MGP_SPRETEiJ_G0021724	Cmss1	100	49.836	Mus_spretus
ENSELUG00000019459	cmss1	80	57.741	ENSMPUG00000011324	CMSS1	92	57.741	Mustela_putorius_furo
ENSELUG00000019459	cmss1	81	57.551	ENSMLUG00000001131	CMSS1	92	57.551	Myotis_lucifugus
ENSELUG00000019459	cmss1	100	53.333	ENSNGAG00000020316	Cmss1	100	51.667	Nannospalax_galili
ENSELUG00000019459	cmss1	100	60.066	ENSNBRG00000003095	cmss1	100	60.265	Neolamprologus_brichardi
ENSELUG00000019459	cmss1	100	52.000	ENSNLEG00000034172	CMSS1	91	58.333	Nomascus_leucogenys
ENSELUG00000019459	cmss1	75	50.442	ENSMEUG00000014505	CMSS1	89	50.990	Notamacropus_eugenii
ENSELUG00000019459	cmss1	100	51.667	ENSOPRG00000002986	CMSS1	100	49.835	Ochotona_princeps
ENSELUG00000019459	cmss1	81	47.951	ENSODEG00000009446	-	78	51.485	Octodon_degus
ENSELUG00000019459	cmss1	100	45.667	ENSODEG00000001853	-	100	43.322	Octodon_degus
ENSELUG00000019459	cmss1	100	51.667	ENSODEG00000005226	-	100	48.867	Octodon_degus
ENSELUG00000019459	cmss1	100	49.000	ENSODEG00000003558	-	100	49.000	Octodon_degus
ENSELUG00000019459	cmss1	68	73.892	ENSONIG00000006678	cmss1	100	64.751	Oreochromis_niloticus
ENSELUG00000019459	cmss1	77	58.874	ENSOANG00000007529	CMSS1	87	62.376	Ornithorhynchus_anatinus
ENSELUG00000019459	cmss1	80	57.261	ENSOCUG00000025366	CMSS1	87	57.261	Oryctolagus_cuniculus
ENSELUG00000019459	cmss1	100	59.000	ENSORLG00000020340	cmss1	100	58.333	Oryzias_latipes
ENSELUG00000019459	cmss1	80	57.322	ENSORLG00020012235	cmss1	86	62.069	Oryzias_latipes_hni
ENSELUG00000019459	cmss1	68	62.562	ENSORLG00015015551	cmss1	76	62.562	Oryzias_latipes_hsok
ENSELUG00000019459	cmss1	100	61.000	ENSOMEG00000012555	cmss1	100	60.667	Oryzias_melastigma
ENSELUG00000019459	cmss1	75	59.292	ENSOGAG00000002045	CMSS1	89	61.881	Otolemur_garnettii
ENSELUG00000019459	cmss1	81	56.967	ENSOARG00000017899	CMSS1	83	56.967	Ovis_aries
ENSELUG00000019459	cmss1	80	57.917	ENSPPAG00000038515	CMSS1	87	57.917	Pan_paniscus
ENSELUG00000019459	cmss1	100	52.000	ENSPPRG00000016767	CMSS1	100	50.333	Panthera_pardus
ENSELUG00000019459	cmss1	100	51.667	ENSPTIG00000018274	CMSS1	100	47.573	Panthera_tigris_altaica
ENSELUG00000019459	cmss1	100	51.333	ENSPTRG00000015157	CMSS1	100	47.573	Pan_troglodytes
ENSELUG00000019459	cmss1	75	59.735	ENSPANG00000019980	CMSS1	80	62.376	Papio_anubis
ENSELUG00000019459	cmss1	91	62.319	ENSPKIG00000012609	cmss1	96	63.740	Paramormyrops_kingsleyae
ENSELUG00000019459	cmss1	75	60.619	ENSPSIG00000003849	CMSS1	88	62.376	Pelodiscus_sinensis
ENSELUG00000019459	cmss1	68	72.549	ENSPMGG00000010286	cmss1	88	72.549	Periophthalmus_magnuspinnatus
ENSELUG00000019459	cmss1	100	53.000	ENSPEMG00000016384	Cmss1	100	52.318	Peromyscus_maniculatus_bairdii
ENSELUG00000019459	cmss1	68	52.941	ENSPMAG00000001146	cmss1	99	53.202	Petromyzon_marinus
ENSELUG00000019459	cmss1	80	56.017	ENSPCIG00000015656	CMSS1	91	56.017	Phascolarctos_cinereus
ENSELUG00000019459	cmss1	100	60.066	ENSPFOG00000016849	cmss1	100	58.746	Poecilia_formosa
ENSELUG00000019459	cmss1	100	59.736	ENSPLAG00000008323	cmss1	100	58.416	Poecilia_latipinna
ENSELUG00000019459	cmss1	100	59.736	ENSPMEG00000021020	cmss1	100	59.076	Poecilia_mexicana
ENSELUG00000019459	cmss1	86	64.368	ENSPREG00000007618	cmss1	89	63.118	Poecilia_reticulata
ENSELUG00000019459	cmss1	100	51.000	ENSPPYG00000013606	CMSS1	100	46.602	Pongo_abelii
ENSELUG00000019459	cmss1	100	53.000	ENSPCOG00000020035	CMSS1	100	52.333	Propithecus_coquereli
ENSELUG00000019459	cmss1	100	44.000	ENSPVAG00000017031	CMSS1	100	43.667	Pteropus_vampyrus
ENSELUG00000019459	cmss1	91	60.289	ENSPNYG00000013428	cmss1	97	60.507	Pundamilia_nyererei
ENSELUG00000019459	cmss1	100	55.776	ENSPNAG00000007912	cmss1	100	56.106	Pygocentrus_nattereri
ENSELUG00000019459	cmss1	80	58.333	ENSRNOG00000027888	Cmss1	92	58.333	Rattus_norvegicus
ENSELUG00000019459	cmss1	100	50.000	ENSRBIG00000037931	CMSS1	92	56.667	Rhinopithecus_bieti
ENSELUG00000019459	cmss1	100	50.000	ENSRROG00000042910	CMSS1	92	56.667	Rhinopithecus_roxellana
ENSELUG00000019459	cmss1	80	57.083	ENSSBOG00000030980	CMSS1	91	57.083	Saimiri_boliviensis_boliviensis
ENSELUG00000019459	cmss1	80	56.432	ENSSHAG00000009321	CMSS1	94	56.432	Sarcophilus_harrisii
ENSELUG00000019459	cmss1	100	62.171	ENSSFOG00015001509	cmss1	100	59.740	Scleropages_formosus
ENSELUG00000019459	cmss1	100	59.539	ENSSMAG00000001653	cmss1	100	59.477	Scophthalmus_maximus
ENSELUG00000019459	cmss1	100	60.396	ENSSDUG00000007719	cmss1	100	60.526	Seriola_dumerili
ENSELUG00000019459	cmss1	69	74.396	ENSSLDG00000012300	cmss1	68	74.384	Seriola_lalandi_dorsalis
ENSELUG00000019459	cmss1	100	41.000	ENSSARG00000003584	CMSS1	100	41.333	Sorex_araneus
ENSELUG00000019459	cmss1	75	58.850	ENSSPUG00000003865	CMSS1	89	60.891	Sphenodon_punctatus
ENSELUG00000019459	cmss1	69	75.728	ENSSPAG00000019182	cmss1	63	75.369	Stegastes_partitus
ENSELUG00000019459	cmss1	100	50.667	ENSSSCG00000011970	CMSS1	100	49.333	Sus_scrofa
ENSELUG00000019459	cmss1	75	58.407	ENSTGUG00000013635	CMSS1	88	59.901	Taeniopygia_guttata
ENSELUG00000019459	cmss1	100	59.333	ENSTRUG00000015265	cmss1	100	56.393	Takifugu_rubripes
ENSELUG00000019459	cmss1	68	63.054	ENSTNIG00000002880	cmss1	92	58.103	Tetraodon_nigroviridis
ENSELUG00000019459	cmss1	75	42.920	ENSTBEG00000016722	CMSS1	72	43.069	Tupaia_belangeri
ENSELUG00000019459	cmss1	100	48.667	ENSTTRG00000001562	CMSS1	100	48.000	Tursiops_truncatus
ENSELUG00000019459	cmss1	80	58.750	ENSUAMG00000024209	CMSS1	91	62.871	Ursus_americanus
ENSELUG00000019459	cmss1	80	58.333	ENSUMAG00000001983	CMSS1	92	58.333	Ursus_maritimus
ENSELUG00000019459	cmss1	53	61.875	ENSVPAG00000000263	CMSS1	57	61.875	Vicugna_pacos
ENSELUG00000019459	cmss1	80	59.167	ENSVVUG00000021647	-	97	59.167	Vulpes_vulpes
ENSELUG00000019459	cmss1	79	56.303	ENSVVUG00000007776	-	80	61.881	Vulpes_vulpes
ENSELUG00000019459	cmss1	100	50.166	ENSXETG00000011858	cmss1	100	50.166	Xenopus_tropicalis
ENSELUG00000019459	cmss1	89	58.696	ENSXCOG00000018724	cmss1	90	61.597	Xiphophorus_couchianus
ENSELUG00000019459	cmss1	69	71.635	ENSXMAG00000011243	cmss1	99	61.597	Xiphophorus_maculatus