EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000019588 (Gene tree)
Gene ID: 105011526
Gene Symbol: cirbpb
Alias: -
Full Name: cold-inducible RNA-binding protein B
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 3820 bases
Position: chrLG08:11626603-11630422
Accession: 105011526
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000039445	RRM_1	PF00076.22	5.2e-24	1	1
ENSELUP00000020359	RRM_1	PF00076.22	5.3e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000041408	-	700	XM_010871606	ENSELUP00000039445	202 (aa)	XP_010869908	-
ENSELUT00000041404	-	1401	XM_010871605	ENSELUP00000020359	205 (aa)	XP_010869907	UPI00057625F3

Gene Model

Click here to download ENSELUG00000019588's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000019588's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000019588	cirbpb	59	35.000	ENSELUG00000018927	ncbp2	51	35.443
ENSELUG00000019588	cirbpb	51	36.842	ENSELUG00000020089	-	53	42.105
ENSELUG00000019588	cirbpb	51	38.835	ENSELUG00000023080	hnrnpa3	51	46.053
ENSELUG00000019588	cirbpb	54	33.036	ENSELUG00000024182	SRSF6	67	31.579

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000019588	cirbpb	100	57.426	ENSFHEG00000002580	cirbpa	50	73.494	Fundulus_heteroclitus
ENSELUG00000019588	cirbpb	58	64.407	ENSHCOG00000001170	cirbpa	69	75.904	Hippocampus_comes
ENSELUG00000019588	cirbpb	100	55.556	ENSLBEG00000000292	cirbpa	52	72.619	Labrus_bergylta
ENSELUG00000019588	cirbpb	100	62.617	ENSPNAG00000019997	cirbpb	50	63.793	Pygocentrus_nattereri
ENSELUG00000019588	cirbpb	100	50.495	ENSSPAG00000023037	cirbpa	51	73.494	Stegastes_partitus
ENSELUG00000019588	cirbpb	100	63.366	ENSXCOG00000008262	cirbpa	92	69.863	Xiphophorus_couchianus