EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000019852 (Gene tree)
Gene ID: 105024333
Gene Symbol: srsf5b
Alias: sfrs5b|wu:fe15e05|zgc:113907|zgc:92278
Full Name: serine/arginine-rich splicing factor 5
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 7522 bases
Position: chrLG23:18513642-18521163
Accession: 105024333
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000039615	RRM_1	PF00076.22	1.5e-31	1	2
ENSELUP00000039615	RRM_1	PF00076.22	1.5e-31	2	2
ENSELUP00000020623	RRM_1	PF00076.22	1.7e-31	1	2
ENSELUP00000020623	RRM_1	PF00076.22	1.7e-31	2	2
ENSELUP00000039604	RRM_1	PF00076.22	1.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000041509	-	2665	XM_010894204	ENSELUP00000020623	335 (aa)	XP_010892506	UPI000577039E
ENSELUT00000031118	-	2635	XM_010894205	ENSELUP00000039615	325 (aa)	XP_010892507	UPI00057722EB
ENSELUT00000031148	-	1303	-	ENSELUP00000039604	169 (aa)	-	-

Gene Model

Click here to download ENSELUG00000019852's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03040	Spliceosome	KEGG
els05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000019852's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000019852	srsf5b	83	42.466	ENSELUG00000021646	srsf1a	63	45.251
ENSELUG00000019852	srsf5b	83	47.518	ENSELUG00000017551	srsf4	92	58.209
ENSELUG00000019852	srsf5b	83	55.714	ENSELUG00000024182	SRSF6	87	60.000
ENSELUG00000019852	srsf5b	85	34.228	ENSELUG00000012644	SRSF9	68	43.011
ENSELUG00000019852	srsf5b	53	46.629	ENSELUG00000018267	pigs	64	46.703
ENSELUG00000019852	srsf5b	85	63.889	ENSELUG00000020439	srsf5a	63	66.667
ENSELUG00000019852	srsf5b	85	53.103	ENSELUG00000013506	SRSF6	62	68.116
ENSELUG00000019852	srsf5b	57	38.265	ENSELUG00000021669	srsf9	68	40.212

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000019852	srsf5b	88	69.536	ENSG00000100650	SRSF5	98	73.134	Homo_sapiens
ENSELUG00000019852	srsf5b	85	84.028	ENSAPOG00000008642	srsf5b	92	75.000	Acanthochromis_polyacanthus
ENSELUG00000019852	srsf5b	85	69.863	ENSAMEG00000014574	SRSF5	67	78.866	Ailuropoda_melanoleuca
ENSELUG00000019852	srsf5b	100	73.936	ENSACIG00000010742	srsf5b	81	94.030	Amphilophus_citrinellus
ENSELUG00000019852	srsf5b	85	84.028	ENSAOCG00000005719	srsf5b	92	75.329	Amphiprion_ocellaris
ENSELUG00000019852	srsf5b	85	84.028	ENSAPEG00000007830	srsf5b	92	75.329	Amphiprion_percula
ENSELUG00000019852	srsf5b	85	82.639	ENSATEG00000019112	srsf5b	92	75.987	Anabas_testudineus
ENSELUG00000019852	srsf5b	82	66.667	ENSAPLG00000014681	SRSF5	69	77.436	Anas_platyrhynchos
ENSELUG00000019852	srsf5b	85	70.548	ENSACAG00000005143	SRSF5	69	79.897	Anolis_carolinensis
ENSELUG00000019852	srsf5b	85	67.808	ENSANAG00000037529	-	95	70.896	Aotus_nancymaae
ENSELUG00000019852	srsf5b	88	69.536	ENSANAG00000027977	-	76	92.000	Aotus_nancymaae
ENSELUG00000019852	srsf5b	85	85.417	ENSACLG00000026424	srsf5b	92	72.368	Astatotilapia_calliptera
ENSELUG00000019852	srsf5b	100	82.840	ENSAMXG00000011932	srsf5b	100	82.840	Astyanax_mexicanus
ENSELUG00000019852	srsf5b	85	69.863	ENSBTAG00000011596	SRSF5	67	78.866	Bos_taurus
ENSELUG00000019852	srsf5b	88	69.536	ENSCJAG00000014884	SRSF5	76	92.000	Callithrix_jacchus
ENSELUG00000019852	srsf5b	85	69.863	ENSCAFG00000016589	SRSF5	67	78.866	Canis_familiaris
ENSELUG00000019852	srsf5b	85	69.863	ENSCAFG00020005661	SRSF5	67	78.866	Canis_lupus_dingo
ENSELUG00000019852	srsf5b	85	69.863	ENSCHIG00000016794	SRSF5	66	78.866	Capra_hircus
ENSELUG00000019852	srsf5b	88	69.536	ENSTSYG00000007786	SRSF5	76	92.000	Carlito_syrichta
ENSELUG00000019852	srsf5b	85	69.863	ENSCAPG00000008801	SRSF5	66	78.866	Cavia_aperea
ENSELUG00000019852	srsf5b	85	69.863	ENSCPOG00000039926	SRSF5	66	78.866	Cavia_porcellus
ENSELUG00000019852	srsf5b	88	69.536	ENSCCAG00000029002	SRSF5	76	92.000	Cebus_capucinus
ENSELUG00000019852	srsf5b	88	69.536	ENSCATG00000045051	SRSF5	76	92.000	Cercocebus_atys
ENSELUG00000019852	srsf5b	85	69.863	ENSCLAG00000004755	SRSF5	67	78.866	Chinchilla_lanigera
ENSELUG00000019852	srsf5b	85	69.863	ENSCSAG00000013041	SRSF5	67	78.866	Chlorocebus_sabaeus
ENSELUG00000019852	srsf5b	85	69.863	ENSCPBG00000021653	SRSF5	68	79.381	Chrysemys_picta_bellii
ENSELUG00000019852	srsf5b	88	69.536	ENSCANG00000030560	SRSF5	76	92.000	Colobus_angolensis_palliatus
ENSELUG00000019852	srsf5b	85	69.863	ENSCGRG00001015339	Srsf5	68	78.866	Cricetulus_griseus_chok1gshd
ENSELUG00000019852	srsf5b	85	69.863	ENSCGRG00000009833	Srsf5	68	78.866	Cricetulus_griseus_crigri
ENSELUG00000019852	srsf5b	85	82.639	ENSCSEG00000003801	srsf5b	66	94.330	Cynoglossus_semilaevis
ENSELUG00000019852	srsf5b	85	81.250	ENSCVAG00000017240	srsf5b	88	72.078	Cyprinodon_variegatus
ENSELUG00000019852	srsf5b	97	82.317	ENSDARG00000027734	srsf5b	90	90.299	Danio_rerio
ENSELUG00000019852	srsf5b	85	69.863	ENSDNOG00000006160	SRSF5	68	78.866	Dasypus_novemcinctus
ENSELUG00000019852	srsf5b	85	69.863	ENSDORG00000003989	Srsf5	68	78.866	Dipodomys_ordii
ENSELUG00000019852	srsf5b	85	64.583	ENSETEG00000020396	SRSF5	68	77.320	Echinops_telfairi
ENSELUG00000019852	srsf5b	85	52.381	ENSEBUG00000006229	srsf5b	76	56.364	Eptatretus_burgeri
ENSELUG00000019852	srsf5b	85	69.863	ENSEASG00005016615	SRSF5	67	78.866	Equus_asinus_asinus
ENSELUG00000019852	srsf5b	88	69.536	ENSECAG00000026873	SRSF5	88	73.134	Equus_caballus
ENSELUG00000019852	srsf5b	88	69.536	ENSFCAG00000008848	SRSF5	75	92.000	Felis_catus
ENSELUG00000019852	srsf5b	85	65.972	ENSFALG00000004979	SRSF5	68	79.381	Ficedula_albicollis
ENSELUG00000019852	srsf5b	85	69.863	ENSFDAG00000011562	SRSF5	68	78.866	Fukomys_damarensis
ENSELUG00000019852	srsf5b	85	80.556	ENSFHEG00000009476	srsf5b	88	71.053	Fundulus_heteroclitus
ENSELUG00000019852	srsf5b	85	84.932	ENSGMOG00000000595	srsf5b	99	83.186	Gadus_morhua
ENSELUG00000019852	srsf5b	88	65.101	ENSGALG00000009421	SRSF5	88	72.388	Gallus_gallus
ENSELUG00000019852	srsf5b	85	80.556	ENSGAFG00000002865	srsf5b	89	70.724	Gambusia_affinis
ENSELUG00000019852	srsf5b	100	78.363	ENSGACG00000007834	srsf5b	100	80.117	Gasterosteus_aculeatus
ENSELUG00000019852	srsf5b	85	69.863	ENSGAGG00000004447	SRSF5	68	79.381	Gopherus_agassizii
ENSELUG00000019852	srsf5b	88	69.536	ENSGGOG00000016462	SRSF5	76	92.000	Gorilla_gorilla
ENSELUG00000019852	srsf5b	85	85.417	ENSHBUG00000012462	srsf5b	93	93.284	Haplochromis_burtoni
ENSELUG00000019852	srsf5b	85	69.178	ENSHGLG00000010147	SRSF5	67	78.351	Heterocephalus_glaber_female
ENSELUG00000019852	srsf5b	61	80.000	ENSHGLG00100000095	-	62	80.645	Heterocephalus_glaber_male
ENSELUG00000019852	srsf5b	85	69.178	ENSHGLG00100015328	SRSF5	67	78.351	Heterocephalus_glaber_male
ENSELUG00000019852	srsf5b	85	79.861	ENSHCOG00000005592	srsf5b	66	87.113	Hippocampus_comes
ENSELUG00000019852	srsf5b	85	69.863	ENSSTOG00000020672	SRSF5	67	78.866	Ictidomys_tridecemlineatus
ENSELUG00000019852	srsf5b	85	69.863	ENSJJAG00000001688	Srsf5	67	78.866	Jaculus_jaculus
ENSELUG00000019852	srsf5b	100	81.657	ENSKMAG00000020486	srsf5b	100	79.882	Kryptolebias_marmoratus
ENSELUG00000019852	srsf5b	85	81.250	ENSLBEG00000013647	srsf5b	92	75.658	Labrus_bergylta
ENSELUG00000019852	srsf5b	85	71.528	ENSLACG00000005874	SRSF5	68	83.077	Latimeria_chalumnae
ENSELUG00000019852	srsf5b	85	76.389	ENSLOCG00000012438	srsf5b	70	84.422	Lepisosteus_oculatus
ENSELUG00000019852	srsf5b	85	69.178	ENSLAFG00000005260	SRSF5	67	78.351	Loxodonta_africana
ENSELUG00000019852	srsf5b	88	69.536	ENSMFAG00000002393	SRSF5	76	92.000	Macaca_fascicularis
ENSELUG00000019852	srsf5b	88	69.536	ENSMNEG00000030872	SRSF5	76	92.000	Macaca_nemestrina
ENSELUG00000019852	srsf5b	88	69.536	ENSMLEG00000030017	SRSF5	76	92.000	Mandrillus_leucophaeus
ENSELUG00000019852	srsf5b	85	80.556	ENSMAMG00000002673	srsf5b	92	73.355	Mastacembelus_armatus
ENSELUG00000019852	srsf5b	85	85.417	ENSMZEG00005003550	srsf5b	92	72.368	Maylandia_zebra
ENSELUG00000019852	srsf5b	62	52.381	ENSMGAG00000011835	SRSF5	63	73.548	Meleagris_gallopavo
ENSELUG00000019852	srsf5b	85	69.863	ENSMAUG00000009544	Srsf5	67	78.866	Mesocricetus_auratus
ENSELUG00000019852	srsf5b	88	69.536	ENSMICG00000037432	-	76	92.000	Microcebus_murinus
ENSELUG00000019852	srsf5b	85	69.863	ENSMOCG00000013134	Srsf5	67	78.866	Microtus_ochrogaster
ENSELUG00000019852	srsf5b	99	67.059	ENSMMOG00000000137	srsf5b	93	75.735	Mola_mola
ENSELUG00000019852	srsf5b	85	69.863	ENSMODG00000011362	SRSF5	68	79.381	Monodelphis_domestica
ENSELUG00000019852	srsf5b	100	80.473	ENSMALG00000021875	srsf5b	100	82.249	Monopterus_albus
ENSELUG00000019852	srsf5b	85	69.863	ENSMUSG00000021134	Srsf5	96	93.182	Mus_musculus
ENSELUG00000019852	srsf5b	85	69.863	MGP_PahariEiJ_G0029659	Srsf5	68	78.866	Mus_pahari
ENSELUG00000019852	srsf5b	85	69.863	ENSMPUG00000007458	SRSF5	67	78.866	Mustela_putorius_furo
ENSELUG00000019852	srsf5b	85	69.863	ENSMLUG00000011939	SRSF5	65	78.866	Myotis_lucifugus
ENSELUG00000019852	srsf5b	85	69.863	ENSNGAG00000010073	-	67	78.866	Nannospalax_galili
ENSELUG00000019852	srsf5b	85	87.500	ENSNBRG00000001285	srsf5b	92	73.684	Neolamprologus_brichardi
ENSELUG00000019852	srsf5b	88	69.536	ENSNLEG00000001615	SRSF5	76	92.000	Nomascus_leucogenys
ENSELUG00000019852	srsf5b	85	69.863	ENSOPRG00000008286	SRSF5	65	78.866	Ochotona_princeps
ENSELUG00000019852	srsf5b	85	69.863	ENSODEG00000013469	-	68	78.866	Octodon_degus
ENSELUG00000019852	srsf5b	85	68.493	ENSODEG00000000700	-	69	76.804	Octodon_degus
ENSELUG00000019852	srsf5b	85	85.417	ENSONIG00000005759	srsf5b	92	72.368	Oreochromis_niloticus
ENSELUG00000019852	srsf5b	85	63.699	ENSOANG00000013336	SRSF5	68	74.742	Ornithorhynchus_anatinus
ENSELUG00000019852	srsf5b	85	69.863	ENSOCUG00000009274	SRSF5	66	78.866	Oryctolagus_cuniculus
ENSELUG00000019852	srsf5b	85	81.250	ENSORLG00000029854	srsf5b	92	71.246	Oryzias_latipes
ENSELUG00000019852	srsf5b	85	84.722	ENSORLG00015001720	srsf5b	92	74.013	Oryzias_latipes_hsok
ENSELUG00000019852	srsf5b	85	84.722	ENSOMEG00000020690	srsf5b	67	69.637	Oryzias_melastigma
ENSELUG00000019852	srsf5b	85	69.863	ENSOGAG00000015122	SRSF5	67	78.866	Otolemur_garnettii
ENSELUG00000019852	srsf5b	88	69.536	ENSPPAG00000029921	SRSF5	76	92.000	Pan_paniscus
ENSELUG00000019852	srsf5b	88	69.536	ENSPPRG00000012903	SRSF5	75	92.000	Panthera_pardus
ENSELUG00000019852	srsf5b	88	69.536	ENSPTIG00000018589	SRSF5	75	92.000	Panthera_tigris_altaica
ENSELUG00000019852	srsf5b	88	69.536	ENSPTRG00000006488	SRSF5	76	92.000	Pan_troglodytes
ENSELUG00000019852	srsf5b	88	69.536	ENSPANG00000021091	SRSF5	76	92.000	Papio_anubis
ENSELUG00000019852	srsf5b	85	69.863	ENSPSIG00000012522	SRSF5	69	79.381	Pelodiscus_sinensis
ENSELUG00000019852	srsf5b	89	80.667	ENSPMGG00000021646	srsf5b	91	89.552	Periophthalmus_magnuspinnatus
ENSELUG00000019852	srsf5b	85	69.863	ENSPEMG00000020173	Srsf5	68	78.866	Peromyscus_maniculatus_bairdii
ENSELUG00000019852	srsf5b	85	53.425	ENSPMAG00000007790	srsf5b	68	60.914	Petromyzon_marinus
ENSELUG00000019852	srsf5b	85	69.863	ENSPCIG00000011877	SRSF5	68	79.381	Phascolarctos_cinereus
ENSELUG00000019852	srsf5b	93	77.228	ENSPFOG00000017700	srsf5b	89	70.627	Poecilia_formosa
ENSELUG00000019852	srsf5b	85	86.111	ENSPLAG00000006480	srsf5b	89	70.957	Poecilia_latipinna
ENSELUG00000019852	srsf5b	100	83.432	ENSPMEG00000012751	srsf5b	100	82.249	Poecilia_mexicana
ENSELUG00000019852	srsf5b	85	80.556	ENSPREG00000010381	srsf5b	89	70.395	Poecilia_reticulata
ENSELUG00000019852	srsf5b	85	69.863	ENSPPYG00000005945	SRSF5	67	78.866	Pongo_abelii
ENSELUG00000019852	srsf5b	85	69.178	ENSPCAG00000004405	SRSF5	100	76.582	Procavia_capensis
ENSELUG00000019852	srsf5b	88	69.536	ENSPCOG00000014442	SRSF5	88	73.134	Propithecus_coquereli
ENSELUG00000019852	srsf5b	85	85.417	ENSPNYG00000002669	srsf5b	94	93.284	Pundamilia_nyererei
ENSELUG00000019852	srsf5b	100	82.249	ENSPNAG00000011262	srsf5b	100	82.249	Pygocentrus_nattereri
ENSELUG00000019852	srsf5b	85	69.863	ENSRNOG00000005513	Srsf5	68	78.866	Rattus_norvegicus
ENSELUG00000019852	srsf5b	88	69.536	ENSRBIG00000013003	SRSF5	76	92.000	Rhinopithecus_bieti
ENSELUG00000019852	srsf5b	88	69.536	ENSRROG00000043407	SRSF5	76	92.000	Rhinopithecus_roxellana
ENSELUG00000019852	srsf5b	88	69.536	ENSSBOG00000030784	SRSF5	76	92.000	Saimiri_boliviensis_boliviensis
ENSELUG00000019852	srsf5b	85	69.863	ENSSHAG00000002871	SRSF5	68	79.381	Sarcophilus_harrisii
ENSELUG00000019852	srsf5b	85	82.119	ENSSMAG00000019728	srsf5b	91	74.679	Scophthalmus_maximus
ENSELUG00000019852	srsf5b	85	80.556	ENSSDUG00000005766	srsf5b	66	93.814	Seriola_dumerili
ENSELUG00000019852	srsf5b	100	79.290	ENSSLDG00000023255	srsf5b	100	81.657	Seriola_lalandi_dorsalis
ENSELUG00000019852	srsf5b	60	76.238	ENSSARG00000001059	SRSF5	67	67.010	Sorex_araneus
ENSELUG00000019852	srsf5b	88	69.333	ENSSPUG00000002464	SRSF5	93	70.000	Sphenodon_punctatus
ENSELUG00000019852	srsf5b	85	85.417	ENSSPAG00000015325	srsf5b	92	74.671	Stegastes_partitus
ENSELUG00000019852	srsf5b	85	69.863	ENSSSCG00000032583	SRSF5	67	78.866	Sus_scrofa
ENSELUG00000019852	srsf5b	85	65.972	ENSTGUG00000011425	SRSF5	68	79.381	Taeniopygia_guttata
ENSELUG00000019852	srsf5b	85	75.694	ENSTRUG00000017811	srsf5b	95	74.675	Takifugu_rubripes
ENSELUG00000019852	srsf5b	94	68.092	ENSTNIG00000016411	srsf5b	95	69.967	Tetraodon_nigroviridis
ENSELUG00000019852	srsf5b	85	69.863	ENSTBEG00000001972	SRSF5	66	76.804	Tupaia_belangeri
ENSELUG00000019852	srsf5b	85	69.655	ENSTTRG00000003318	SRSF5	66	78.756	Tursiops_truncatus
ENSELUG00000019852	srsf5b	85	69.863	ENSUAMG00000014184	SRSF5	67	78.866	Ursus_americanus
ENSELUG00000019852	srsf5b	85	69.863	ENSUMAG00000009827	SRSF5	67	78.866	Ursus_maritimus
ENSELUG00000019852	srsf5b	85	69.863	ENSVPAG00000006448	SRSF5	67	78.866	Vicugna_pacos
ENSELUG00000019852	srsf5b	85	69.863	ENSVVUG00000003790	SRSF5	67	78.866	Vulpes_vulpes
ENSELUG00000019852	srsf5b	85	72.917	ENSXETG00000002211	srsf5	68	75.743	Xenopus_tropicalis
ENSELUG00000019852	srsf5b	85	86.111	ENSXCOG00000001570	srsf5b	89	72.368	Xiphophorus_couchianus
ENSELUG00000019852	srsf5b	100	84.024	ENSXMAG00000026416	srsf5b	100	82.840	Xiphophorus_maculatus