EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000019925 (Gene tree)
Gene ID: 105030958
Gene Symbol: hdlbpb
Alias: fa07b03|sb:eu532|si:dkey-38p12.2|wu:fa07b03
Full Name: vigilin
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 12763 bases
Position: chrLG24:10404646-10417408
Accession: 105030958
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000020708	KH_1	PF00013.29	1e-160	1	12
ENSELUP00000020708	KH_1	PF00013.29	1e-160	2	12
ENSELUP00000020708	KH_1	PF00013.29	1e-160	3	12
ENSELUP00000020708	KH_1	PF00013.29	1e-160	4	12
ENSELUP00000020708	KH_1	PF00013.29	1e-160	5	12
ENSELUP00000020708	KH_1	PF00013.29	1e-160	6	12
ENSELUP00000020708	KH_1	PF00013.29	1e-160	7	12
ENSELUP00000020708	KH_1	PF00013.29	1e-160	8	12
ENSELUP00000020708	KH_1	PF00013.29	1e-160	9	12
ENSELUP00000020708	KH_1	PF00013.29	1e-160	10	12
ENSELUP00000020708	KH_1	PF00013.29	1e-160	11	12
ENSELUP00000020708	KH_1	PF00013.29	1e-160	12	12

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000041545	-	3633	XM_010905103	ENSELUP00000020708	1210 (aa)	XP_010903405	-

Gene Model

Click here to download ENSELUG00000019925's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000019925's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000019925	hdlbpb	100	60.231	ENSELUG00000010700	hdlbpa	100	56.929

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000019925	hdlbpb	100	78.728	ENSAPOG00000006904	hdlbpb	100	78.571	Acanthochromis_polyacanthus
ENSELUG00000019925	hdlbpb	100	75.000	ENSACIG00000016154	hdlbpb	87	38.309	Amphilophus_citrinellus
ENSELUG00000019925	hdlbpb	100	78.964	ENSAOCG00000004083	hdlbpb	100	78.807	Amphiprion_ocellaris
ENSELUG00000019925	hdlbpb	100	78.885	ENSAPEG00000012270	hdlbpb	100	78.728	Amphiprion_percula
ENSELUG00000019925	hdlbpb	100	78.414	ENSATEG00000019877	hdlbpb	100	78.257	Anabas_testudineus
ENSELUG00000019925	hdlbpb	100	70.732	ENSACAG00000003606	-	100	63.094	Anolis_carolinensis
ENSELUG00000019925	hdlbpb	100	78.476	ENSACLG00000006618	hdlbpb	100	78.476	Astatotilapia_calliptera
ENSELUG00000019925	hdlbpb	100	72.676	ENSAMXG00000019946	hdlbpb	100	72.676	Astyanax_mexicanus
ENSELUG00000019925	hdlbpb	100	77.612	ENSCSEG00000000955	hdlbpb	100	77.612	Cynoglossus_semilaevis
ENSELUG00000019925	hdlbpb	100	78.083	ENSCVAG00000005345	hdlbpb	100	66.610	Cyprinodon_variegatus
ENSELUG00000019925	hdlbpb	99	75.276	ENSDARG00000061864	hdlbpb	99	75.039	Danio_rerio
ENSELUG00000019925	hdlbpb	92	60.529	ENSEBUG00000005304	hdlbpb	96	60.529	Eptatretus_burgeri
ENSELUG00000019925	hdlbpb	100	46.845	ENSFHEG00000001701	hdlbpb	86	62.263	Fundulus_heteroclitus
ENSELUG00000019925	hdlbpb	96	82.677	ENSGMOG00000004522	hdlbpb	78	82.677	Gadus_morhua
ENSELUG00000019925	hdlbpb	100	77.865	ENSGAFG00000005278	hdlbpb	100	66.695	Gambusia_affinis
ENSELUG00000019925	hdlbpb	99	75.943	ENSGACG00000019361	hdlbpb	100	75.943	Gasterosteus_aculeatus
ENSELUG00000019925	hdlbpb	100	78.397	ENSHBUG00000018434	hdlbpb	100	78.397	Haplochromis_burtoni
ENSELUG00000019925	hdlbpb	100	73.998	ENSIPUG00000003291	HDLBP	100	73.920	Ictalurus_punctatus
ENSELUG00000019925	hdlbpb	100	78.022	ENSKMAG00000016562	hdlbpb	100	66.355	Kryptolebias_marmoratus
ENSELUG00000019925	hdlbpb	100	78.257	ENSLBEG00000027855	hdlbpb	100	78.100	Labrus_bergylta
ENSELUG00000019925	hdlbpb	100	75.553	ENSLACG00000007661	hdlbpb	100	75.553	Latimeria_chalumnae
ENSELUG00000019925	hdlbpb	100	72.642	ENSLOCG00000013909	hdlbpb	100	65.059	Lepisosteus_oculatus
ENSELUG00000019925	hdlbpb	100	78.571	ENSMAMG00000003035	hdlbpb	100	78.414	Mastacembelus_armatus
ENSELUG00000019925	hdlbpb	100	78.476	ENSMZEG00005021465	hdlbpb	100	78.476	Maylandia_zebra
ENSELUG00000019925	hdlbpb	100	78.031	ENSMMOG00000012525	hdlbpb	100	78.031	Mola_mola
ENSELUG00000019925	hdlbpb	100	76.688	ENSMALG00000008938	hdlbpb	100	76.531	Monopterus_albus
ENSELUG00000019925	hdlbpb	100	78.476	ENSNBRG00000002236	hdlbpb	100	78.476	Neolamprologus_brichardi
ENSELUG00000019925	hdlbpb	100	78.319	ENSONIG00000009211	hdlbpb	100	78.319	Oreochromis_niloticus
ENSELUG00000019925	hdlbpb	100	77.455	ENSORLG00000006581	hdlbpb	100	68.375	Oryzias_latipes
ENSELUG00000019925	hdlbpb	100	77.533	ENSORLG00020010012	hdlbpb	100	68.170	Oryzias_latipes_hni
ENSELUG00000019925	hdlbpb	100	77.690	ENSORLG00015006863	hdlbpb	100	68.435	Oryzias_latipes_hsok
ENSELUG00000019925	hdlbpb	100	78.397	ENSOMEG00000011131	hdlbpb	100	77.219	Oryzias_melastigma
ENSELUG00000019925	hdlbpb	100	77.419	ENSPKIG00000005966	hdlbpb	100	77.577	Paramormyrops_kingsleyae
ENSELUG00000019925	hdlbpb	79	86.740	ENSPMGG00000019853	hdlbpb	99	86.740	Periophthalmus_magnuspinnatus
ENSELUG00000019925	hdlbpb	94	66.048	ENSPMAG00000002131	hdlbpb	100	66.048	Petromyzon_marinus
ENSELUG00000019925	hdlbpb	91	54.605	ENSPMAG00000000249	-	99	55.063	Petromyzon_marinus
ENSELUG00000019925	hdlbpb	100	77.407	ENSPFOG00000008755	hdlbpb	100	66.079	Poecilia_formosa
ENSELUG00000019925	hdlbpb	100	78.257	ENSPLAG00000007055	hdlbpb	100	66.865	Poecilia_latipinna
ENSELUG00000019925	hdlbpb	100	78.336	ENSPMEG00000001952	hdlbpb	100	67.035	Poecilia_mexicana
ENSELUG00000019925	hdlbpb	100	78.414	ENSPREG00000012848	hdlbpb	100	78.257	Poecilia_reticulata
ENSELUG00000019925	hdlbpb	100	78.600	ENSPNYG00000022467	hdlbpb	100	78.600	Pundamilia_nyererei
ENSELUG00000019925	hdlbpb	100	75.118	ENSPNAG00000011104	hdlbpb	100	76.415	Pygocentrus_nattereri
ENSELUG00000019925	hdlbpb	100	77.183	ENSSFOG00015023199	hdlbpb	100	77.183	Scleropages_formosus
ENSELUG00000019925	hdlbpb	100	78.947	ENSSMAG00000008790	hdlbpb	100	78.947	Scophthalmus_maximus
ENSELUG00000019925	hdlbpb	100	78.538	ENSSDUG00000020694	hdlbpb	100	78.381	Seriola_dumerili
ENSELUG00000019925	hdlbpb	100	78.442	ENSSLDG00000020807	hdlbpb	100	78.285	Seriola_lalandi_dorsalis
ENSELUG00000019925	hdlbpb	100	71.934	ENSSPUG00000018688	-	100	63.208	Sphenodon_punctatus
ENSELUG00000019925	hdlbpb	100	78.807	ENSSPAG00000016969	hdlbpb	100	78.650	Stegastes_partitus
ENSELUG00000019925	hdlbpb	98	74.961	ENSTRUG00000012888	hdlbpb	99	74.803	Takifugu_rubripes
ENSELUG00000019925	hdlbpb	99	76.131	ENSTNIG00000002555	hdlbpb	100	65.934	Tetraodon_nigroviridis
ENSELUG00000019925	hdlbpb	100	73.443	ENSXCOG00000001797	hdlbpb	100	73.279	Xiphophorus_couchianus
ENSELUG00000019925	hdlbpb	100	78.022	ENSXMAG00000015633	hdlbpb	100	66.950	Xiphophorus_maculatus