EuRBPDB

Description

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000039797	RRM_1	PF00076.22	1.8e-34	1	2
ENSELUP00000039797	RRM_1	PF00076.22	1.8e-34	2	2
ENSELUP00000020929	RRM_1	PF00076.22	3.6e-34	1	2
ENSELUP00000020929	RRM_1	PF00076.22	3.6e-34	2	2
ENSELUP00000039813	RRM_1	PF00076.22	4.3e-34	1	2
ENSELUP00000039813	RRM_1	PF00076.22	4.3e-34	2	2
ENSELUP00000039797	HnRNPA1	PF11627.8	4.8e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000041642	-	2737	XM_010881240	ENSELUP00000039813	368 (aa)	XP_010879542	UPI0005761C9C
ENSELUT00000031462	-	852	-	ENSELUP00000039797	283 (aa)	-	-
ENSELUT00000031669	-	1229	XM_020055730	ENSELUP00000020929	350 (aa)	XP_019911289	UPI00097349A7

Gene Model

Pathways

Pathway ID	Pathway Name	Source
els03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000020089	-	72	74.384	ENSELUG00000023080	hnrnpa3	87	60.741
ENSELUG00000020089	-	79	38.519	ENSELUG00000003241	hnrnpdl	61	38.824
ENSELUG00000020089	-	66	57.303	ENSELUG00000014398	-	89	48.289
ENSELUG00000020089	-	70	87.831	ENSELUG00000007372	-	77	87.629
ENSELUG00000020089	-	53	43.421	ENSELUG00000004675	-	77	38.462
ENSELUG00000020089	-	69	38.095	ENSELUG00000015443	hnrnpaba	60	36.036
ENSELUG00000020089	-	66	33.000	ENSELUG00000013252	tardbpl	62	33.793
ENSELUG00000020089	-	57	30.357	ENSELUG00000003195	pabpc4	54	30.357
ENSELUG00000020089	-	75	33.000	ENSELUG00000010286	dazap1	53	41.573
ENSELUG00000020089	-	67	30.058	ENSELUG00000015062	-	56	30.058
ENSELUG00000020089	-	93	38.542	ENSELUG00000011747	msi2a	62	41.989
ENSELUG00000020089	-	67	43.182	ENSELUG00000023280	-	54	43.182
ENSELUG00000020089	-	71	59.627	ENSELUG00000014407	-	95	59.627
ENSELUG00000020089	-	53	47.368	ENSELUG00000019617	-	55	43.678
ENSELUG00000020089	-	53	42.105	ENSELUG00000019588	cirbpb	51	36.842
ENSELUG00000020089	-	62	38.426	ENSELUG00000003230	hnrnpd	59	37.778
ENSELUG00000020089	-	87	37.113	ENSELUG00000001361	msi2b	68	46.154
ENSELUG00000020089	-	68	36.250	ENSELUG00000020765	hnrnpabb	62	38.378
ENSELUG00000020089	-	57	30.814	ENSELUG00000003614	pabpc1a	56	30.814
ENSELUG00000020089	-	53	44.737	ENSELUG00000009891	cirbpa	52	46.479

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000020089	-	81	48.846	ENSCAFG00000017424	-	67	56.477	Canis_familiaris
ENSELUG00000020089	-	88	52.921	ENSCAFG00000030783	-	85	52.015	Canis_familiaris
ENSELUG00000020089	-	88	52.577	ENSCAFG00000031044	-	85	51.648	Canis_familiaris
ENSELUG00000020089	-	98	63.118	ENSCSAG00000004770	-	84	68.354	Chlorocebus_sabaeus
ENSELUG00000020089	-	83	60.504	ENSDNOG00000039025	-	97	60.606	Dasypus_novemcinctus
ENSELUG00000020089	-	88	60.331	ENSDNOG00000036385	-	77	68.966	Dasypus_novemcinctus
ENSELUG00000020089	-	62	58.989	ENSDNOG00000037420	-	77	57.500	Dasypus_novemcinctus
ENSELUG00000020089	-	89	50.394	ENSETEG00000013374	-	83	49.153	Echinops_telfairi
ENSELUG00000020089	-	88	55.823	ENSETEG00000010614	-	81	56.951	Echinops_telfairi
ENSELUG00000020089	-	88	61.905	ENSETEG00000007429	-	83	60.851	Echinops_telfairi
ENSELUG00000020089	-	89	56.757	ENSFDAG00000009166	-	87	54.545	Fukomys_damarensis
ENSELUG00000020089	-	67	66.667	ENSMPUG00000000096	-	75	66.495	Mustela_putorius_furo
ENSELUG00000020089	-	67	76.316	ENSNLEG00000029989	-	87	75.916	Nomascus_leucogenys
ENSELUG00000020089	-	77	65.417	ENSNLEG00000034385	-	90	73.846	Nomascus_leucogenys
ENSELUG00000020089	-	89	62.025	ENSOCUG00000022668	-	87	86.559	Oryctolagus_cuniculus
ENSELUG00000020089	-	81	45.690	ENSOARG00000010092	-	62	53.684	Ovis_aries
ENSELUG00000020089	-	89	75.591	ENSPPRG00000018110	-	95	67.143	Panthera_pardus
ENSELUG00000020089	-	85	79.808	ENSRNOG00000050603	AABR07055875.1	83	48.963	Rattus_norvegicus
ENSELUG00000020089	-	85	79.808	ENSRNOG00000046286	AABR07055878.1	83	48.963	Rattus_norvegicus