EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000020389 (Gene tree)
Gene ID: 105025497
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 3507 bases
Position: chrLG04:26105591-26109097
Accession: 105025497
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000021271	Smg4_UPF3	PF03467.15	2.8e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000031915	-	1680	XM_010896216	ENSELUP00000021271	484 (aa)	XP_010894518	UPI000577BB66

Gene Model

Click here to download ENSELUG00000020389's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03013	RNA transport	KEGG
els03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000020389's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000020389	upf3b	65	61.194	ENSG00000125351	UPF3B	96	67.619	Homo_sapiens
ENSELUG00000020389	upf3b	100	73.868	ENSAPOG00000012775	upf3b	99	69.628	Acanthochromis_polyacanthus
ENSELUG00000020389	upf3b	90	43.151	ENSAMEG00000004259	UPF3A	50	62.185	Ailuropoda_melanoleuca
ENSELUG00000020389	upf3b	100	53.800	ENSAMEG00000000163	UPF3B	100	51.479	Ailuropoda_melanoleuca
ENSELUG00000020389	upf3b	100	65.844	ENSACIG00000013582	upf3b	99	67.423	Amphilophus_citrinellus
ENSELUG00000020389	upf3b	100	73.045	ENSAOCG00000000706	upf3b	99	70.309	Amphiprion_ocellaris
ENSELUG00000020389	upf3b	100	74.227	ENSAPEG00000005545	upf3b	99	71.488	Amphiprion_percula
ENSELUG00000020389	upf3b	100	71.340	ENSATEG00000018742	upf3b	99	70.041	Anabas_testudineus
ENSELUG00000020389	upf3b	90	43.213	ENSACAG00000001540	UPF3A	61	59.160	Anolis_carolinensis
ENSELUG00000020389	upf3b	93	58.225	ENSACAG00000003625	UPF3B	71	63.158	Anolis_carolinensis
ENSELUG00000020389	upf3b	100	51.098	ENSANAG00000025598	-	100	47.732	Aotus_nancymaae
ENSELUG00000020389	upf3b	100	53.600	ENSANAG00000021894	-	97	66.029	Aotus_nancymaae
ENSELUG00000020389	upf3b	100	70.722	ENSACLG00000001649	upf3b	99	68.182	Astatotilapia_calliptera
ENSELUG00000020389	upf3b	61	69.565	ENSAMXG00000002608	upf3a	50	68.644	Astyanax_mexicanus
ENSELUG00000020389	upf3b	69	76.344	ENSAMXG00000000199	upf3b	86	80.695	Astyanax_mexicanus
ENSELUG00000020389	upf3b	57	64.041	ENSBTAG00000035615	UPF3B	88	67.647	Bos_taurus
ENSELUG00000020389	upf3b	100	53.770	ENSCJAG00000004975	UPF3B	97	66.986	Callithrix_jacchus
ENSELUG00000020389	upf3b	100	52.047	ENSCAFG00000018426	UPF3B	100	50.000	Canis_familiaris
ENSELUG00000020389	upf3b	100	50.800	ENSCAFG00020004074	UPF3B	100	49.307	Canis_lupus_dingo
ENSELUG00000020389	upf3b	54	49.615	ENSCHIG00000011454	-	53	50.826	Capra_hircus
ENSELUG00000020389	upf3b	100	50.097	ENSCHIG00000000247	-	92	52.500	Capra_hircus
ENSELUG00000020389	upf3b	93	52.083	ENSCHIG00000018011	-	88	67.279	Capra_hircus
ENSELUG00000020389	upf3b	100	51.400	ENSTSYG00000014690	UPF3B	96	60.930	Carlito_syrichta
ENSELUG00000020389	upf3b	54	52.471	ENSCPOG00000006824	UPF3A	53	60.593	Cavia_porcellus
ENSELUG00000020389	upf3b	86	37.143	ENSCCAG00000029813	-	69	51.316	Cebus_capucinus
ENSELUG00000020389	upf3b	65	61.194	ENSCATG00000017506	UPF3B	97	66.029	Cercocebus_atys
ENSELUG00000020389	upf3b	65	61.145	ENSCLAG00000003260	UPF3B	100	51.282	Chinchilla_lanigera
ENSELUG00000020389	upf3b	65	58.908	ENSCSAG00000018348	UPF3B	100	51.538	Chlorocebus_sabaeus
ENSELUG00000020389	upf3b	93	57.081	ENSCPBG00000020685	UPF3B	72	60.882	Chrysemys_picta_bellii
ENSELUG00000020389	upf3b	57	63.729	ENSCANG00000029220	UPF3B	85	67.647	Colobus_angolensis_palliatus
ENSELUG00000020389	upf3b	65	59.394	ENSCGRG00001006858	-	82	53.589	Cricetulus_griseus_chok1gshd
ENSELUG00000020389	upf3b	65	56.667	ENSCGRG00001013643	-	95	56.620	Cricetulus_griseus_chok1gshd
ENSELUG00000020389	upf3b	57	64.982	ENSCGRG00000007627	Upf3b	91	53.382	Cricetulus_griseus_crigri
ENSELUG00000020389	upf3b	93	69.401	ENSCSEG00000002046	upf3b	88	70.628	Cynoglossus_semilaevis
ENSELUG00000020389	upf3b	100	67.078	ENSCVAG00000005030	upf3b	99	64.536	Cyprinodon_variegatus
ENSELUG00000020389	upf3b	100	70.431	ENSDARG00000000489	upf3b	100	69.405	Danio_rerio
ENSELUG00000020389	upf3b	74	44.598	ENSDNOG00000034391	UPF3A	51	62.712	Dasypus_novemcinctus
ENSELUG00000020389	upf3b	100	50.097	ENSDNOG00000008665	UPF3B	100	50.192	Dasypus_novemcinctus
ENSELUG00000020389	upf3b	100	49.901	ENSDORG00000006077	Upf3b	92	53.579	Dipodomys_ordii
ENSELUG00000020389	upf3b	93	53.503	ENSEASG00005012919	UPF3B	92	51.709	Equus_asinus_asinus
ENSELUG00000020389	upf3b	93	53.503	ENSECAG00000016947	UPF3B	92	51.709	Equus_caballus
ENSELUG00000020389	upf3b	65	61.145	ENSFCAG00000004388	UPF3B	100	51.473	Felis_catus
ENSELUG00000020389	upf3b	93	55.061	ENSFALG00000001569	UPF3B	74	56.873	Ficedula_albicollis
ENSELUG00000020389	upf3b	100	54.000	ENSFDAG00000018869	UPF3B	100	54.000	Fukomys_damarensis
ENSELUG00000020389	upf3b	100	67.076	ENSFHEG00000017895	upf3b	99	64.754	Fundulus_heteroclitus
ENSELUG00000020389	upf3b	100	68.712	ENSGMOG00000001621	upf3b	99	67.008	Gadus_morhua
ENSELUG00000020389	upf3b	99	53.892	ENSGALG00000008618	UPF3B	72	61.383	Gallus_gallus
ENSELUG00000020389	upf3b	100	66.598	ENSGAFG00000000829	upf3b	99	63.223	Gambusia_affinis
ENSELUG00000020389	upf3b	100	70.515	ENSGACG00000017435	upf3b	94	83.658	Gasterosteus_aculeatus
ENSELUG00000020389	upf3b	99	57.582	ENSGAGG00000001219	UPF3B	72	64.012	Gopherus_agassizii
ENSELUG00000020389	upf3b	65	61.194	ENSGGOG00000023995	UPF3B	100	52.860	Gorilla_gorilla
ENSELUG00000020389	upf3b	100	70.722	ENSHBUG00000017393	upf3b	99	68.182	Haplochromis_burtoni
ENSELUG00000020389	upf3b	51	57.143	ENSHGLG00000001544	UPF3A	54	58.051	Heterocephalus_glaber_female
ENSELUG00000020389	upf3b	65	56.024	ENSHGLG00000011189	-	81	55.172	Heterocephalus_glaber_female
ENSELUG00000020389	upf3b	100	53.000	ENSHGLG00000019582	-	100	52.695	Heterocephalus_glaber_female
ENSELUG00000020389	upf3b	78	51.399	ENSHGLG00100001889	-	82	55.172	Heterocephalus_glaber_male
ENSELUG00000020389	upf3b	100	49.800	ENSHGLG00100002042	-	100	50.898	Heterocephalus_glaber_male
ENSELUG00000020389	upf3b	51	57.143	ENSHGLG00100013244	UPF3A	54	58.051	Heterocephalus_glaber_male
ENSELUG00000020389	upf3b	100	65.708	ENSHCOG00000017004	upf3b	99	62.757	Hippocampus_comes
ENSELUG00000020389	upf3b	100	71.193	ENSIPUG00000019249	upf3b	100	71.253	Ictalurus_punctatus
ENSELUG00000020389	upf3b	72	58.953	ENSSTOG00000001101	UPF3B	100	51.383	Ictidomys_tridecemlineatus
ENSELUG00000020389	upf3b	65	60.241	ENSJJAG00000000053	Upf3b	100	49.507	Jaculus_jaculus
ENSELUG00000020389	upf3b	100	66.529	ENSKMAG00000020300	upf3b	99	66.460	Kryptolebias_marmoratus
ENSELUG00000020389	upf3b	60	80.887	ENSLBEG00000028689	upf3b	59	83.764	Labrus_bergylta
ENSELUG00000020389	upf3b	100	57.347	ENSLACG00000008691	UPF3B	56	75.849	Latimeria_chalumnae
ENSELUG00000020389	upf3b	64	79.355	ENSLOCG00000015238	upf3b	100	66.255	Lepisosteus_oculatus
ENSELUG00000020389	upf3b	100	50.895	ENSLAFG00000001267	UPF3B	100	51.085	Loxodonta_africana
ENSELUG00000020389	upf3b	65	60.896	ENSMFAG00000045414	UPF3B	97	66.029	Macaca_fascicularis
ENSELUG00000020389	upf3b	85	42.822	ENSMMUG00000007449	UPF3A	50	60.776	Macaca_mulatta
ENSELUG00000020389	upf3b	65	60.896	ENSMMUG00000020222	UPF3B	97	66.029	Macaca_mulatta
ENSELUG00000020389	upf3b	65	60.896	ENSMNEG00000039794	UPF3B	97	66.029	Macaca_nemestrina
ENSELUG00000020389	upf3b	65	61.194	ENSMLEG00000010999	UPF3B	97	66.029	Mandrillus_leucophaeus
ENSELUG00000020389	upf3b	92	41.850	ENSMLEG00000014726	UPF3A	53	57.082	Mandrillus_leucophaeus
ENSELUG00000020389	upf3b	100	64.272	ENSMAMG00000020069	upf3b	99	64.981	Mastacembelus_armatus
ENSELUG00000020389	upf3b	100	70.515	ENSMZEG00005007871	upf3b	99	67.975	Maylandia_zebra
ENSELUG00000020389	upf3b	86	42.243	ENSMGAG00000014837	UPF3A	51	65.116	Meleagris_gallopavo
ENSELUG00000020389	upf3b	78	57.256	ENSMGAG00000007728	UPF3B	65	64.453	Meleagris_gallopavo
ENSELUG00000020389	upf3b	100	50.000	ENSMAUG00000008705	Upf3b	90	52.106	Mesocricetus_auratus
ENSELUG00000020389	upf3b	57	63.356	ENSMICG00000001743	UPF3B	85	66.912	Microcebus_murinus
ENSELUG00000020389	upf3b	100	49.805	ENSMOCG00000017893	Upf3b	100	47.969	Microtus_ochrogaster
ENSELUG00000020389	upf3b	100	66.392	ENSMMOG00000004183	upf3b	99	64.050	Mola_mola
ENSELUG00000020389	upf3b	87	59.620	ENSMODG00000010232	UPF3B	91	58.313	Monodelphis_domestica
ENSELUG00000020389	upf3b	91	43.146	ENSMODG00000003159	UPF3A	53	65.106	Monodelphis_domestica
ENSELUG00000020389	upf3b	100	69.835	ENSMALG00000008042	upf3b	92	70.112	Monopterus_albus
ENSELUG00000020389	upf3b	51	61.417	MGP_CAROLIEiJ_G0030848	Upf3a	54	64.069	Mus_caroli
ENSELUG00000020389	upf3b	100	50.301	MGP_CAROLIEiJ_G0032999	Upf3b	90	52.772	Mus_caroli
ENSELUG00000020389	upf3b	51	61.024	ENSMUSG00000038398	Upf3a	52	63.636	Mus_musculus
ENSELUG00000020389	upf3b	65	59.091	ENSMUSG00000036572	Upf3b	88	54.468	Mus_musculus
ENSELUG00000020389	upf3b	100	50.701	MGP_PahariEiJ_G0031543	Upf3b	89	54.894	Mus_pahari
ENSELUG00000020389	upf3b	53	60.456	MGP_PahariEiJ_G0021311	Upf3a	52	64.069	Mus_pahari
ENSELUG00000020389	upf3b	51	61.024	MGP_SPRETEiJ_G0031958	Upf3a	52	63.636	Mus_spretus
ENSELUG00000020389	upf3b	65	59.091	MGP_SPRETEiJ_G0034152	Upf3b	89	54.468	Mus_spretus
ENSELUG00000020389	upf3b	70	59.155	ENSMPUG00000001531	UPF3B	94	53.004	Mustela_putorius_furo
ENSELUG00000020389	upf3b	100	52.200	ENSMLUG00000010821	UPF3B	92	54.176	Myotis_lucifugus
ENSELUG00000020389	upf3b	87	43.868	ENSMLUG00000015905	UPF3A	54	63.291	Myotis_lucifugus
ENSELUG00000020389	upf3b	100	50.400	ENSNGAG00000008231	Upf3b	74	55.932	Nannospalax_galili
ENSELUG00000020389	upf3b	59	66.899	ENSNLEG00000014897	UPF3B	90	54.803	Nomascus_leucogenys
ENSELUG00000020389	upf3b	100	51.600	ENSODEG00000002186	-	78	58.790	Octodon_degus
ENSELUG00000020389	upf3b	100	72.371	ENSONIG00000002536	upf3b	99	70.041	Oreochromis_niloticus
ENSELUG00000020389	upf3b	90	53.378	ENSOANG00000002594	-	67	58.194	Ornithorhynchus_anatinus
ENSELUG00000020389	upf3b	67	40.184	ENSOANG00000006985	-	55	53.617	Ornithorhynchus_anatinus
ENSELUG00000020389	upf3b	100	51.751	ENSOCUG00000010213	UPF3B	100	49.038	Oryctolagus_cuniculus
ENSELUG00000020389	upf3b	100	66.872	ENSORLG00000001026	upf3b	99	62.190	Oryzias_latipes
ENSELUG00000020389	upf3b	100	66.461	ENSORLG00020003758	upf3b	99	61.983	Oryzias_latipes_hni
ENSELUG00000020389	upf3b	100	67.284	ENSORLG00015012954	upf3b	99	62.397	Oryzias_latipes_hsok
ENSELUG00000020389	upf3b	100	67.490	ENSOMEG00000014736	upf3b	99	63.017	Oryzias_melastigma
ENSELUG00000020389	upf3b	65	60.843	ENSOGAG00000004643	-	100	51.383	Otolemur_garnettii
ENSELUG00000020389	upf3b	95	51.134	ENSOGAG00000033003	-	94	50.535	Otolemur_garnettii
ENSELUG00000020389	upf3b	87	44.787	ENSOARG00000007869	-	71	49.834	Ovis_aries
ENSELUG00000020389	upf3b	100	49.806	ENSOARG00000016051	-	92	51.967	Ovis_aries
ENSELUG00000020389	upf3b	65	61.194	ENSPPAG00000040390	UPF3B	100	52.860	Pan_paniscus
ENSELUG00000020389	upf3b	100	51.690	ENSPPRG00000023536	UPF3B	100	51.677	Panthera_pardus
ENSELUG00000020389	upf3b	65	61.212	ENSPTIG00000015264	UPF3B	100	53.892	Panthera_tigris_altaica
ENSELUG00000020389	upf3b	65	61.194	ENSPTRG00000022228	UPF3B	100	52.860	Pan_troglodytes
ENSELUG00000020389	upf3b	65	61.194	ENSPANG00000000900	UPF3B	97	66.029	Papio_anubis
ENSELUG00000020389	upf3b	100	66.122	ENSPKIG00000019226	upf3b	99	78.981	Paramormyrops_kingsleyae
ENSELUG00000020389	upf3b	56	62.909	ENSPSIG00000005833	UPF3B	90	65.370	Pelodiscus_sinensis
ENSELUG00000020389	upf3b	88	44.622	ENSPSIG00000007468	UPF3A	62	61.364	Pelodiscus_sinensis
ENSELUG00000020389	upf3b	54	82.510	ENSPMGG00000016067	upf3b	95	81.369	Periophthalmus_magnuspinnatus
ENSELUG00000020389	upf3b	100	50.800	ENSPEMG00000012352	Upf3b	92	51.844	Peromyscus_maniculatus_bairdii
ENSELUG00000020389	upf3b	90	56.463	ENSPCIG00000028914	UPF3B	60	61.074	Phascolarctos_cinereus
ENSELUG00000020389	upf3b	74	56.561	ENSPCIG00000019590	-	64	67.808	Phascolarctos_cinereus
ENSELUG00000020389	upf3b	100	66.804	ENSPLAG00000005105	upf3b	99	63.843	Poecilia_latipinna
ENSELUG00000020389	upf3b	100	66.804	ENSPLAG00000019922	upf3b	99	63.843	Poecilia_latipinna
ENSELUG00000020389	upf3b	55	71.795	ENSPLAG00000011960	upf3a	51	76.404	Poecilia_latipinna
ENSELUG00000020389	upf3b	100	66.804	ENSPMEG00000023532	upf3b	99	63.843	Poecilia_mexicana
ENSELUG00000020389	upf3b	55	72.436	ENSPMEG00000000836	upf3a	60	59.486	Poecilia_mexicana
ENSELUG00000020389	upf3b	54	66.547	ENSPPYG00000020675	-	82	67.273	Pongo_abelii
ENSELUG00000020389	upf3b	100	51.462	ENSPCAG00000009464	UPF3B	75	57.221	Procavia_capensis
ENSELUG00000020389	upf3b	100	50.600	ENSPCOG00000021960	UPF3B	85	67.279	Propithecus_coquereli
ENSELUG00000020389	upf3b	100	70.103	ENSPNYG00000009846	upf3b	99	67.562	Pundamilia_nyererei
ENSELUG00000020389	upf3b	100	72.840	ENSPNAG00000021528	upf3b	86	86.047	Pygocentrus_nattereri
ENSELUG00000020389	upf3b	50	62.753	ENSRNOG00000017397	Upf3a	54	63.203	Rattus_norvegicus
ENSELUG00000020389	upf3b	65	59.394	ENSRNOG00000039994	Upf3b	82	53.349	Rattus_norvegicus
ENSELUG00000020389	upf3b	50	65.306	ENSRBIG00000037219	UPF3B	100	52.745	Rhinopithecus_bieti
ENSELUG00000020389	upf3b	87	42.891	ENSRBIG00000034007	UPF3A	51	57.328	Rhinopithecus_bieti
ENSELUG00000020389	upf3b	65	61.194	ENSRROG00000041031	UPF3B	97	66.029	Rhinopithecus_roxellana
ENSELUG00000020389	upf3b	100	54.000	ENSSBOG00000019740	UPF3B	99	66.029	Saimiri_boliviensis_boliviensis
ENSELUG00000020389	upf3b	91	43.371	ENSSHAG00000009895	UPF3A	55	64.017	Sarcophilus_harrisii
ENSELUG00000020389	upf3b	92	57.942	ENSSHAG00000008634	UPF3B	92	54.624	Sarcophilus_harrisii
ENSELUG00000020389	upf3b	100	67.423	ENSSFOG00015005614	upf3b	100	66.186	Scleropages_formosus
ENSELUG00000020389	upf3b	59	71.429	ENSSFOG00015021851	upf3a	51	68.103	Scleropages_formosus
ENSELUG00000020389	upf3b	100	72.485	ENSSMAG00000012913	upf3b	99	71.193	Scophthalmus_maximus
ENSELUG00000020389	upf3b	100	71.959	ENSSDUG00000005682	upf3b	99	69.421	Seriola_dumerili
ENSELUG00000020389	upf3b	90	42.466	ENSSDUG00000009680	upf3a	55	76.404	Seriola_dumerili
ENSELUG00000020389	upf3b	100	71.959	ENSSLDG00000003130	upf3b	99	69.421	Seriola_lalandi_dorsalis
ENSELUG00000020389	upf3b	86	33.493	ENSSARG00000007262	UPF3A	63	46.097	Sorex_araneus
ENSELUG00000020389	upf3b	92	51.178	ENSSARG00000004147	UPF3B	72	60.383	Sorex_araneus
ENSELUG00000020389	upf3b	99	54.781	ENSSPUG00000013082	UPF3B	71	58.000	Sphenodon_punctatus
ENSELUG00000020389	upf3b	99	71.992	ENSSPAG00000009989	upf3b	99	71.222	Stegastes_partitus
ENSELUG00000020389	upf3b	90	41.704	ENSSSCG00000024679	UPF3A	55	55.508	Sus_scrofa
ENSELUG00000020389	upf3b	100	53.293	ENSSSCG00000012617	UPF3B	100	51.085	Sus_scrofa
ENSELUG00000020389	upf3b	87	45.498	ENSTGUG00000009493	UPF3A	58	64.407	Taeniopygia_guttata
ENSELUG00000020389	upf3b	92	57.650	ENSTGUG00000003413	UPF3B	91	58.213	Taeniopygia_guttata
ENSELUG00000020389	upf3b	100	65.226	ENSTRUG00000010645	upf3b	99	61.077	Takifugu_rubripes
ENSELUG00000020389	upf3b	88	43.427	ENSTNIG00000014973	upf3a	62	51.550	Tetraodon_nigroviridis
ENSELUG00000020389	upf3b	100	58.642	ENSTNIG00000015763	upf3b	100	52.058	Tetraodon_nigroviridis
ENSELUG00000020389	upf3b	67	57.091	ENSTBEG00000003229	UPF3B	56	57.091	Tupaia_belangeri
ENSELUG00000020389	upf3b	100	51.400	ENSUAMG00000024565	UPF3B	100	49.605	Ursus_americanus
ENSELUG00000020389	upf3b	93	50.554	ENSUMAG00000002150	UPF3B	91	51.663	Ursus_maritimus
ENSELUG00000020389	upf3b	88	51.025	ENSVPAG00000009971	UPF3B	90	52.580	Vicugna_pacos
ENSELUG00000020389	upf3b	85	42.118	ENSVPAG00000003525	UPF3A	55	60.345	Vicugna_pacos
ENSELUG00000020389	upf3b	100	50.600	ENSVVUG00000011594	UPF3B	97	66.029	Vulpes_vulpes
ENSELUG00000020389	upf3b	96	49.691	ENSXETG00000007440	upf3b	100	72.294	Xenopus_tropicalis
ENSELUG00000020389	upf3b	100	55.227	ENSXCOG00000016586	upf3b	98	82.741	Xiphophorus_couchianus
ENSELUG00000020389	upf3b	100	67.828	ENSXMAG00000013680	upf3b	99	62.810	Xiphophorus_maculatus