EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000020439 (Gene tree)
Gene ID: 105025531
Gene Symbol: srsf5a
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine and arginine rich splicing factor 5
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 6895 bases
Position: chrLG15:26071063-26077957
Accession: 105025531
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000021330	RRM_1	PF00076.22	1.6e-33	1	2
ENSELUP00000021330	RRM_1	PF00076.22	1.6e-33	2	2
ENSELUP00000040065	RRM_1	PF00076.22	1.6e-33	1	2
ENSELUP00000040065	RRM_1	PF00076.22	1.6e-33	2	2
ENSELUP00000021330	RRM_3	PF08777.11	2.9e-08	1	1
ENSELUP00000040065	RRM_3	PF08777.11	2.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000041808	-	4211	-	ENSELUP00000021330	310 (aa)	-	UPI0005772741
ENSELUT00000031978	-	3757	XM_010896270	ENSELUP00000040065	310 (aa)	XP_010894572	UPI0005772741

Gene Model

Click here to download ENSELUG00000020439's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03040	Spliceosome	KEGG
els05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000020439's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000020439	srsf5a	59	39.362	ENSELUG00000021669	srsf9	68	40.741
ENSELUG00000020439	srsf5a	57	44.022	ENSELUG00000021646	srsf1a	65	39.785
ENSELUG00000020439	srsf5a	57	43.478	ENSELUG00000018267	pigs	66	42.553
ENSELUG00000020439	srsf5a	62	61.458	ENSELUG00000013506	SRSF6	61	72.059
ENSELUG00000020439	srsf5a	98	46.417	ENSELUG00000017551	srsf4	93	57.971
ENSELUG00000020439	srsf5a	93	35.354	ENSELUG00000012644	SRSF9	68	39.153
ENSELUG00000020439	srsf5a	61	61.257	ENSELUG00000024182	SRSF6	88	60.156
ENSELUG00000020439	srsf5a	63	66.667	ENSELUG00000019852	srsf5b	85	63.889

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000020439	srsf5a	62	80.311	ENSAPOG00000017395	srsf5a	62	81.865	Acanthochromis_polyacanthus
ENSELUG00000020439	srsf5a	81	68.000	ENSACIG00000011892	srsf5a	98	75.352	Amphilophus_citrinellus
ENSELUG00000020439	srsf5a	62	79.793	ENSAOCG00000014967	srsf5a	62	80.829	Amphiprion_ocellaris
ENSELUG00000020439	srsf5a	62	79.793	ENSAPEG00000009297	srsf5a	62	80.829	Amphiprion_percula
ENSELUG00000020439	srsf5a	62	83.938	ENSATEG00000000198	srsf5a	65	81.865	Anabas_testudineus
ENSELUG00000020439	srsf5a	62	75.385	ENSAPLG00000002469	-	70	73.333	Anas_platyrhynchos
ENSELUG00000020439	srsf5a	62	77.720	ENSACAG00000029015	-	96	59.060	Anolis_carolinensis
ENSELUG00000020439	srsf5a	62	80.711	ENSACLG00000027166	srsf5a	65	75.610	Astatotilapia_calliptera
ENSELUG00000020439	srsf5a	62	89.119	ENSAMXG00000030476	srsf5a	67	86.528	Astyanax_mexicanus
ENSELUG00000020439	srsf5a	62	76.684	ENSCPBG00000021518	-	70	76.166	Chrysemys_picta_bellii
ENSELUG00000020439	srsf5a	62	57.653	ENSCSAVG00000011376	-	78	57.653	Ciona_savignyi
ENSELUG00000020439	srsf5a	62	80.829	ENSCSEG00000008109	srsf5a	62	74.879	Cynoglossus_semilaevis
ENSELUG00000020439	srsf5a	61	75.661	ENSCVAG00000016982	srsf5a	96	71.223	Cyprinodon_variegatus
ENSELUG00000020439	srsf5a	63	90.256	ENSDARG00000029818	srsf5a	100	80.282	Danio_rerio
ENSELUG00000020439	srsf5a	62	76.000	ENSFHEG00000003955	srsf5a	97	67.550	Fundulus_heteroclitus
ENSELUG00000020439	srsf5a	62	80.311	ENSGMOG00000000869	srsf5a	94	79.793	Gadus_morhua
ENSELUG00000020439	srsf5a	62	68.394	ENSGAFG00000018237	srsf5a	92	53.896	Gambusia_affinis
ENSELUG00000020439	srsf5a	62	79.275	ENSGACG00000011761	srsf5a	70	81.347	Gasterosteus_aculeatus
ENSELUG00000020439	srsf5a	62	76.684	ENSGAGG00000007312	-	70	76.166	Gopherus_agassizii
ENSELUG00000020439	srsf5a	62	80.829	ENSHBUG00000014048	srsf5a	64	75.980	Haplochromis_burtoni
ENSELUG00000020439	srsf5a	62	84.456	ENSHCOG00000017557	srsf5a	62	82.902	Hippocampus_comes
ENSELUG00000020439	srsf5a	62	85.204	ENSIPUG00000003439	srsf5a	69	85.714	Ictalurus_punctatus
ENSELUG00000020439	srsf5a	62	75.127	ENSKMAG00000014937	srsf5a	75	66.534	Kryptolebias_marmoratus
ENSELUG00000020439	srsf5a	82	68.627	ENSLBEG00000017153	srsf5a	80	76.279	Labrus_bergylta
ENSELUG00000020439	srsf5a	62	77.157	ENSLACG00000017874	-	72	78.680	Latimeria_chalumnae
ENSELUG00000020439	srsf5a	62	88.083	ENSLOCG00000014075	srsf5a	61	85.492	Lepisosteus_oculatus
ENSELUG00000020439	srsf5a	62	83.420	ENSMAMG00000000192	srsf5a	65	80.000	Mastacembelus_armatus
ENSELUG00000020439	srsf5a	62	80.829	ENSMZEG00005010485	srsf5a	64	75.980	Maylandia_zebra
ENSELUG00000020439	srsf5a	66	73.430	ENSMGAG00000011888	-	96	74.286	Meleagris_gallopavo
ENSELUG00000020439	srsf5a	62	82.383	ENSMMOG00000009793	srsf5a	61	81.443	Mola_mola
ENSELUG00000020439	srsf5a	62	77.720	ENSMALG00000021194	srsf5a	63	76.684	Monopterus_albus
ENSELUG00000020439	srsf5a	62	81.538	ENSNBRG00000000771	srsf5a	64	76.355	Neolamprologus_brichardi
ENSELUG00000020439	srsf5a	62	81.538	ENSONIG00000019583	srsf5a	64	76.355	Oreochromis_niloticus
ENSELUG00000020439	srsf5a	66	77.778	ENSORLG00000009268	srsf5a	67	79.381	Oryzias_latipes
ENSELUG00000020439	srsf5a	66	77.295	ENSORLG00020003281	srsf5	67	79.381	Oryzias_latipes_hni
ENSELUG00000020439	srsf5a	62	80.513	ENSORLG00015023075	srsf5	67	79.381	Oryzias_latipes_hsok
ENSELUG00000020439	srsf5a	62	81.865	ENSOMEG00000000628	srsf5a	66	80.829	Oryzias_melastigma
ENSELUG00000020439	srsf5a	62	89.637	ENSPKIG00000002054	srsf5a	68	87.047	Paramormyrops_kingsleyae
ENSELUG00000020439	srsf5a	62	76.289	ENSPSIG00000008238	-	69	72.680	Pelodiscus_sinensis
ENSELUG00000020439	srsf5a	63	76.410	ENSPMGG00000020125	srsf5a	55	76.166	Periophthalmus_magnuspinnatus
ENSELUG00000020439	srsf5a	81	67.717	ENSPFOG00000022993	srsf5a	78	64.751	Poecilia_formosa
ENSELUG00000020439	srsf5a	62	76.531	ENSPLAG00000005508	srsf5a	77	64.615	Poecilia_latipinna
ENSELUG00000020439	srsf5a	81	67.717	ENSPMEG00000016339	srsf5a	78	64.751	Poecilia_mexicana
ENSELUG00000020439	srsf5a	81	65.098	ENSPREG00000018091	srsf5a	79	64.504	Poecilia_reticulata
ENSELUG00000020439	srsf5a	62	80.829	ENSPNYG00000021245	srsf5a	64	75.980	Pundamilia_nyererei
ENSELUG00000020439	srsf5a	62	89.119	ENSPNAG00000021333	srsf5a	66	86.528	Pygocentrus_nattereri
ENSELUG00000020439	srsf5a	62	88.601	ENSSFOG00015008377	srsf5	66	85.492	Scleropages_formosus
ENSELUG00000020439	srsf5a	62	79.612	ENSSMAG00000010899	srsf5a	66	78.641	Scophthalmus_maximus
ENSELUG00000020439	srsf5a	62	80.311	ENSSDUG00000006103	srsf5a	63	80.311	Seriola_dumerili
ENSELUG00000020439	srsf5a	62	80.311	ENSSLDG00000004146	srsf5a	63	80.311	Seriola_lalandi_dorsalis
ENSELUG00000020439	srsf5a	62	74.093	ENSSPUG00000002052	-	68	72.021	Sphenodon_punctatus
ENSELUG00000020439	srsf5a	62	79.793	ENSSPAG00000002821	srsf5a	63	81.347	Stegastes_partitus
ENSELUG00000020439	srsf5a	62	76.684	ENSTGUG00000011492	-	68	75.648	Taeniopygia_guttata
ENSELUG00000020439	srsf5a	62	79.293	ENSTRUG00000022908	srsf5a	65	74.272	Takifugu_rubripes
ENSELUG00000020439	srsf5a	66	78.431	ENSXETG00000017937	srsf5a	72	81.347	Xenopus_tropicalis
ENSELUG00000020439	srsf5a	62	78.351	ENSXCOG00000015338	srsf5a	61	75.000	Xiphophorus_couchianus
ENSELUG00000020439	srsf5a	62	77.202	ENSXMAG00000012823	srsf5a	61	72.816	Xiphophorus_maculatus