EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000020457 (Gene tree)
Gene ID: 105011504
Gene Symbol: si:ch73-63e15.2
Alias: si:dkey-19f23.4
Full Name: strawberry notch homolog 2
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 77622 bases
Position: chrLG08:11012813-11090434
Accession: 105011504
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000021131	ResIII	PF04851.15	8.1e-07	1	1
ENSELUP00000021180	ResIII	PF04851.15	8.5e-07	1	1
ENSELUP00000021167	ResIII	PF04851.15	8.8e-07	1	1
ENSELUP00000040056	ResIII	PF04851.15	8.8e-07	1	1
ENSELUP00000021239	ResIII	PF04851.15	9.3e-07	1	1
ENSELUP00000040040	ResIII	PF04851.15	9.3e-07	1	1
ENSELUP00000040029	ResIII	PF04851.15	9.3e-07	1	1
ENSELUP00000021211	ResIII	PF04851.15	9.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000031969	-	9945	XM_020049182	ENSELUP00000040056	1475 (aa)	XP_019904741	UPI000577DC5D
ENSELUT00000031807	-	9811	XM_010871568	ENSELUP00000021180	1453 (aa)	XP_010869870	UPI0005766786
ENSELUT00000031835	-	9499	-	ENSELUP00000021211	1556 (aa)	-	-
ENSELUT00000031862	-	10027	-	ENSELUP00000021239	1514 (aa)	-	UPI0005775A08
ENSELUT00000041722	-	4338	-	ENSELUP00000021131	1445 (aa)	-	-
ENSELUT00000041734	-	9763	XM_010871569	ENSELUP00000021167	1470 (aa)	XP_010869871	-
ENSELUT00000031879	-	9628	-	ENSELUP00000040029	1526 (aa)	-	-
ENSELUT00000031924	-	9638	XM_010871565	ENSELUP00000040040	1514 (aa)	XP_010869867	UPI0005775A08

Gene Model

Click here to download ENSELUG00000020457's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000020457's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000020457	si:ch73-63e15.2	64	64.172	ENSELUG00000002886	sbno1	75	58.480

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000020457	si:ch73-63e15.2	78	69.418	ENSG00000064932	SBNO2	87	69.660	Homo_sapiens
ENSELUG00000020457	si:ch73-63e15.2	97	86.624	ENSAPOG00000003185	si:ch73-63e15.2	92	86.137	Acanthochromis_polyacanthus
ENSELUG00000020457	si:ch73-63e15.2	84	86.811	ENSAOCG00000016581	si:ch73-63e15.2	93	88.547	Amphiprion_ocellaris
ENSELUG00000020457	si:ch73-63e15.2	84	86.890	ENSAPEG00000008862	si:ch73-63e15.2	91	87.690	Amphiprion_percula
ENSELUG00000020457	si:ch73-63e15.2	91	80.100	ENSATEG00000023838	si:ch73-63e15.2	96	85.952	Anabas_testudineus
ENSELUG00000020457	si:ch73-63e15.2	81	72.176	ENSAPLG00000007158	SBNO2	93	72.176	Anas_platyrhynchos
ENSELUG00000020457	si:ch73-63e15.2	81	65.752	ENSANAG00000026685	SBNO2	88	68.701	Aotus_nancymaae
ENSELUG00000020457	si:ch73-63e15.2	100	72.023	ENSACLG00000005090	si:ch73-63e15.2	100	72.334	Astatotilapia_calliptera
ENSELUG00000020457	si:ch73-63e15.2	89	77.018	ENSAMXG00000015881	si:ch73-63e15.2	99	71.162	Astyanax_mexicanus
ENSELUG00000020457	si:ch73-63e15.2	93	71.931	ENSAMXG00000018868	sbno2a	95	82.285	Astyanax_mexicanus
ENSELUG00000020457	si:ch73-63e15.2	79	69.086	ENSBTAG00000020780	SBNO2	88	69.456	Bos_taurus
ENSELUG00000020457	si:ch73-63e15.2	78	69.844	ENSCAFG00000019543	SBNO2	90	65.895	Canis_familiaris
ENSELUG00000020457	si:ch73-63e15.2	78	69.844	ENSCAFG00020017115	SBNO2	95	65.895	Canis_lupus_dingo
ENSELUG00000020457	si:ch73-63e15.2	79	68.915	ENSCHIG00000026127	SBNO2	90	65.842	Capra_hircus
ENSELUG00000020457	si:ch73-63e15.2	77	67.888	ENSCAPG00000005731	SBNO2	94	67.888	Cavia_aperea
ENSELUG00000020457	si:ch73-63e15.2	78	67.764	ENSCPOG00000007477	SBNO2	86	67.789	Cavia_porcellus
ENSELUG00000020457	si:ch73-63e15.2	81	65.835	ENSCCAG00000037518	SBNO2	88	68.788	Cebus_capucinus
ENSELUG00000020457	si:ch73-63e15.2	81	66.722	ENSCATG00000037046	SBNO2	87	69.573	Cercocebus_atys
ENSELUG00000020457	si:ch73-63e15.2	81	66.750	ENSCLAG00000010178	SBNO2	99	69.702	Chinchilla_lanigera
ENSELUG00000020457	si:ch73-63e15.2	78	69.471	ENSCSAG00000012317	SBNO2	90	65.625	Chlorocebus_sabaeus
ENSELUG00000020457	si:ch73-63e15.2	83	69.727	ENSCPBG00000008920	SBNO2	81	84.245	Chrysemys_picta_bellii
ENSELUG00000020457	si:ch73-63e15.2	77	66.263	ENSCANG00000036745	SBNO2	95	69.154	Colobus_angolensis_palliatus
ENSELUG00000020457	si:ch73-63e15.2	78	67.333	ENSCGRG00001023960	Sbno2	88	66.446	Cricetulus_griseus_chok1gshd
ENSELUG00000020457	si:ch73-63e15.2	78	68.576	ENSCGRG00000011984	Sbno2	88	67.632	Cricetulus_griseus_crigri
ENSELUG00000020457	si:ch73-63e15.2	80	82.494	ENSCSEG00000006856	si:ch73-63e15.2	94	86.585	Cynoglossus_semilaevis
ENSELUG00000020457	si:ch73-63e15.2	99	71.197	ENSCVAG00000005663	si:ch73-63e15.2	100	72.284	Cyprinodon_variegatus
ENSELUG00000020457	si:ch73-63e15.2	90	73.154	ENSDARG00000098801	sbno2a	99	72.963	Danio_rerio
ENSELUG00000020457	si:ch73-63e15.2	100	69.041	ENSDARG00000016188	SBNO2	99	70.592	Danio_rerio
ENSELUG00000020457	si:ch73-63e15.2	78	69.913	ENSDORG00000002916	Sbno2	90	66.399	Dipodomys_ordii
ENSELUG00000020457	si:ch73-63e15.2	78	69.184	ENSEASG00005021621	SBNO2	88	69.694	Equus_asinus_asinus
ENSELUG00000020457	si:ch73-63e15.2	78	69.271	ENSECAG00000011827	SBNO2	88	69.694	Equus_caballus
ENSELUG00000020457	si:ch73-63e15.2	80	72.348	ENSFALG00000013988	SBNO2	92	69.695	Ficedula_albicollis
ENSELUG00000020457	si:ch73-63e15.2	78	66.122	ENSFDAG00000015186	SBNO2	88	66.552	Fukomys_damarensis
ENSELUG00000020457	si:ch73-63e15.2	99	71.087	ENSFHEG00000022262	si:ch73-63e15.2	99	71.663	Fundulus_heteroclitus
ENSELUG00000020457	si:ch73-63e15.2	79	86.240	ENSGMOG00000007542	si:ch73-63e15.2	96	86.240	Gadus_morhua
ENSELUG00000020457	si:ch73-63e15.2	84	71.040	ENSGALG00000037522	SBNO2	91	69.044	Gallus_gallus
ENSELUG00000020457	si:ch73-63e15.2	82	84.647	ENSGAFG00000004860	si:ch73-63e15.2	91	86.109	Gambusia_affinis
ENSELUG00000020457	si:ch73-63e15.2	78	86.707	ENSGACG00000013190	si:ch73-63e15.2	95	86.707	Gasterosteus_aculeatus
ENSELUG00000020457	si:ch73-63e15.2	87	69.535	ENSGAGG00000008348	SBNO2	90	72.436	Gopherus_agassizii
ENSELUG00000020457	si:ch73-63e15.2	100	72.201	ENSHBUG00000010742	si:ch73-63e15.2	100	73.100	Haplochromis_burtoni
ENSELUG00000020457	si:ch73-63e15.2	78	69.151	ENSHGLG00000008739	SBNO2	91	65.465	Heterocephalus_glaber_female
ENSELUG00000020457	si:ch73-63e15.2	81	66.308	ENSHGLG00100005269	SBNO2	99	69.224	Heterocephalus_glaber_male
ENSELUG00000020457	si:ch73-63e15.2	81	83.830	ENSHCOG00000000884	si:ch73-63e15.2	89	84.340	Hippocampus_comes
ENSELUG00000020457	si:ch73-63e15.2	82	80.801	ENSIPUG00000000537	si:ch73-63e15.2	87	81.229	Ictalurus_punctatus
ENSELUG00000020457	si:ch73-63e15.2	91	75.281	ENSIPUG00000019672	sbno2	99	76.091	Ictalurus_punctatus
ENSELUG00000020457	si:ch73-63e15.2	81	67.494	ENSSTOG00000025832	SBNO2	90	66.693	Ictidomys_tridecemlineatus
ENSELUG00000020457	si:ch73-63e15.2	80	64.842	ENSJJAG00000017397	Sbno2	91	63.775	Jaculus_jaculus
ENSELUG00000020457	si:ch73-63e15.2	99	72.211	ENSKMAG00000005541	si:ch73-63e15.2	99	73.016	Kryptolebias_marmoratus
ENSELUG00000020457	si:ch73-63e15.2	90	82.726	ENSLBEG00000025016	si:ch73-63e15.2	99	87.421	Labrus_bergylta
ENSELUG00000020457	si:ch73-63e15.2	90	78.647	ENSLOCG00000004643	si:ch73-63e15.2	99	75.265	Lepisosteus_oculatus
ENSELUG00000020457	si:ch73-63e15.2	78	65.714	ENSLAFG00000008824	SBNO2	89	66.579	Loxodonta_africana
ENSELUG00000020457	si:ch73-63e15.2	81	65.261	ENSMFAG00000040030	SBNO2	89	68.028	Macaca_fascicularis
ENSELUG00000020457	si:ch73-63e15.2	78	69.471	ENSMMUG00000010886	SBNO2	88	67.854	Macaca_mulatta
ENSELUG00000020457	si:ch73-63e15.2	81	66.805	ENSMNEG00000039927	SBNO2	87	69.660	Macaca_nemestrina
ENSELUG00000020457	si:ch73-63e15.2	72	69.802	ENSMLEG00000038556	SBNO2	97	65.630	Mandrillus_leucophaeus
ENSELUG00000020457	si:ch73-63e15.2	91	77.846	ENSMAMG00000018758	si:ch73-63e15.2	99	73.171	Mastacembelus_armatus
ENSELUG00000020457	si:ch73-63e15.2	100	72.125	ENSMZEG00005010682	si:ch73-63e15.2	100	72.442	Maylandia_zebra
ENSELUG00000020457	si:ch73-63e15.2	78	73.339	ENSMGAG00000003801	SBNO2	90	73.339	Meleagris_gallopavo
ENSELUG00000020457	si:ch73-63e15.2	78	69.037	ENSMAUG00000008034	Sbno2	85	70.130	Mesocricetus_auratus
ENSELUG00000020457	si:ch73-63e15.2	78	69.358	ENSMICG00000013071	SBNO2	88	69.358	Microcebus_murinus
ENSELUG00000020457	si:ch73-63e15.2	80	65.950	ENSMOCG00000010504	Sbno2	88	67.136	Microtus_ochrogaster
ENSELUG00000020457	si:ch73-63e15.2	78	72.208	ENSMODG00000005382	SBNO2	88	68.153	Monodelphis_domestica
ENSELUG00000020457	si:ch73-63e15.2	59	90.141	ENSMALG00000021831	si:ch73-63e15.2	98	90.141	Monopterus_albus
ENSELUG00000020457	si:ch73-63e15.2	80	66.058	ENSMUSG00000035673	Sbno2	97	66.943	Mus_musculus
ENSELUG00000020457	si:ch73-63e15.2	78	68.170	MGP_PahariEiJ_G0030976	Sbno2	88	66.998	Mus_pahari
ENSELUG00000020457	si:ch73-63e15.2	80	66.307	MGP_SPRETEiJ_G0016381	Sbno2	94	66.998	Mus_spretus
ENSELUG00000020457	si:ch73-63e15.2	67	71.803	ENSMPUG00000008747	SBNO2	99	67.003	Mustela_putorius_furo
ENSELUG00000020457	si:ch73-63e15.2	80	66.225	ENSNGAG00000004308	Sbno2	90	66.391	Nannospalax_galili
ENSELUG00000020457	si:ch73-63e15.2	75	85.428	ENSNBRG00000022968	si:ch73-63e15.2	99	87.981	Neolamprologus_brichardi
ENSELUG00000020457	si:ch73-63e15.2	79	69.504	ENSNLEG00000001305	SBNO2	89	69.504	Nomascus_leucogenys
ENSELUG00000020457	si:ch73-63e15.2	68	67.619	ENSMEUG00000013511	-	82	67.619	Notamacropus_eugenii
ENSELUG00000020457	si:ch73-63e15.2	77	68.130	ENSOPRG00000017238	SBNO2	94	68.297	Ochotona_princeps
ENSELUG00000020457	si:ch73-63e15.2	78	68.426	ENSODEG00000011822	SBNO2	89	66.337	Octodon_degus
ENSELUG00000020457	si:ch73-63e15.2	100	73.089	ENSONIG00000002490	si:ch73-63e15.2	99	80.234	Oreochromis_niloticus
ENSELUG00000020457	si:ch73-63e15.2	99	71.438	ENSORLG00000000913	si:ch73-63e15.2	99	72.428	Oryzias_latipes
ENSELUG00000020457	si:ch73-63e15.2	99	71.663	ENSORLG00020010978	si:ch73-63e15.2	99	72.360	Oryzias_latipes_hni
ENSELUG00000020457	si:ch73-63e15.2	99	71.466	ENSORLG00015000202	si:ch73-63e15.2	99	72.159	Oryzias_latipes_hsok
ENSELUG00000020457	si:ch73-63e15.2	90	76.593	ENSOMEG00000000359	si:ch73-63e15.2	99	71.215	Oryzias_melastigma
ENSELUG00000020457	si:ch73-63e15.2	78	66.753	ENSOARG00000011130	SBNO2	93	63.301	Ovis_aries
ENSELUG00000020457	si:ch73-63e15.2	78	68.475	ENSPPAG00000032482	SBNO2	89	68.712	Pan_paniscus
ENSELUG00000020457	si:ch73-63e15.2	78	69.418	ENSPTRG00000010185	SBNO2	88	69.558	Pan_troglodytes
ENSELUG00000020457	si:ch73-63e15.2	81	63.485	ENSPANG00000009658	SBNO2	87	66.173	Papio_anubis
ENSELUG00000020457	si:ch73-63e15.2	69	79.900	ENSPKIG00000009707	-	84	80.164	Paramormyrops_kingsleyae
ENSELUG00000020457	si:ch73-63e15.2	99	73.415	ENSPKIG00000024201	si:ch73-63e15.2	99	74.194	Paramormyrops_kingsleyae
ENSELUG00000020457	si:ch73-63e15.2	66	75.305	ENSPSIG00000002852	SBNO2	99	75.305	Pelodiscus_sinensis
ENSELUG00000020457	si:ch73-63e15.2	84	79.310	ENSPMGG00000014375	si:ch73-63e15.2	89	82.470	Periophthalmus_magnuspinnatus
ENSELUG00000020457	si:ch73-63e15.2	78	66.985	ENSPEMG00000024122	Sbno2	90	63.820	Peromyscus_maniculatus_bairdii
ENSELUG00000020457	si:ch73-63e15.2	78	72.294	ENSPCIG00000011264	SBNO2	89	68.442	Phascolarctos_cinereus
ENSELUG00000020457	si:ch73-63e15.2	99	72.195	ENSPFOG00000004096	si:ch73-63e15.2	99	84.596	Poecilia_formosa
ENSELUG00000020457	si:ch73-63e15.2	99	71.853	ENSPLAG00000014653	si:ch73-63e15.2	80	84.117	Poecilia_latipinna
ENSELUG00000020457	si:ch73-63e15.2	99	72.215	ENSPMEG00000002129	si:ch73-63e15.2	96	81.897	Poecilia_mexicana
ENSELUG00000020457	si:ch73-63e15.2	99	71.867	ENSPREG00000006755	si:ch73-63e15.2	99	72.073	Poecilia_reticulata
ENSELUG00000020457	si:ch73-63e15.2	73	68.436	ENSPCAG00000012256	SBNO2	79	68.436	Procavia_capensis
ENSELUG00000020457	si:ch73-63e15.2	81	60.199	ENSPCOG00000015216	SBNO2	89	62.350	Propithecus_coquereli
ENSELUG00000020457	si:ch73-63e15.2	100	72.135	ENSPNYG00000019926	si:ch73-63e15.2	100	73.082	Pundamilia_nyererei
ENSELUG00000020457	si:ch73-63e15.2	92	73.203	ENSPNAG00000026609	sbno2a	99	69.376	Pygocentrus_nattereri
ENSELUG00000020457	si:ch73-63e15.2	90	77.099	ENSPNAG00000020260	si:ch73-63e15.2	100	71.790	Pygocentrus_nattereri
ENSELUG00000020457	si:ch73-63e15.2	80	66.639	ENSRNOG00000013987	Sbno2	89	69.573	Rattus_norvegicus
ENSELUG00000020457	si:ch73-63e15.2	72	68.109	ENSRBIG00000009740	SBNO2	86	68.631	Rhinopithecus_bieti
ENSELUG00000020457	si:ch73-63e15.2	68	72.638	ENSRROG00000044671	SBNO2	85	72.638	Rhinopithecus_roxellana
ENSELUG00000020457	si:ch73-63e15.2	81	66.002	ENSSBOG00000023562	SBNO2	88	68.963	Saimiri_boliviensis_boliviensis
ENSELUG00000020457	si:ch73-63e15.2	76	71.833	ENSSHAG00000010241	SBNO2	97	71.731	Sarcophilus_harrisii
ENSELUG00000020457	si:ch73-63e15.2	97	72.613	ENSSFOG00015005861	si:ch73-63e15.2	97	81.172	Scleropages_formosus
ENSELUG00000020457	si:ch73-63e15.2	84	85.304	ENSSMAG00000012489	si:ch73-63e15.2	85	85.097	Scophthalmus_maximus
ENSELUG00000020457	si:ch73-63e15.2	99	73.216	ENSSDUG00000003527	si:ch73-63e15.2	91	87.115	Seriola_dumerili
ENSELUG00000020457	si:ch73-63e15.2	99	72.645	ENSSLDG00000004623	si:ch73-63e15.2	91	86.798	Seriola_lalandi_dorsalis
ENSELUG00000020457	si:ch73-63e15.2	90	77.415	ENSSPAG00000017717	si:ch73-63e15.2	90	88.340	Stegastes_partitus
ENSELUG00000020457	si:ch73-63e15.2	78	69.584	ENSSSCG00000030042	SBNO2	88	69.599	Sus_scrofa
ENSELUG00000020457	si:ch73-63e15.2	76	86.335	ENSTRUG00000018193	si:ch73-63e15.2	86	86.335	Takifugu_rubripes
ENSELUG00000020457	si:ch73-63e15.2	74	67.777	ENSUAMG00000006568	SBNO2	91	80.726	Ursus_americanus
ENSELUG00000020457	si:ch73-63e15.2	78	69.757	ENSVVUG00000022823	SBNO2	89	65.815	Vulpes_vulpes
ENSELUG00000020457	si:ch73-63e15.2	71	76.518	ENSXETG00000021579	sbno2	90	76.518	Xenopus_tropicalis
ENSELUG00000020457	si:ch73-63e15.2	86	85.503	ENSXCOG00000009209	si:ch73-63e15.2	93	85.545	Xiphophorus_couchianus
ENSELUG00000020457	si:ch73-63e15.2	99	72.364	ENSXMAG00000012091	si:ch73-63e15.2	92	83.767	Xiphophorus_maculatus