EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000020489 (Gene tree)
Gene ID: 105009378
Gene Symbol: snrpc
Alias: U1C|chunp6909|zgc:109792
Full Name: U1 small nuclear ribonucleoprotein C
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 6252 bases
Position: chrLG17:34783831-34790082
Accession: 105009378
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000040115	zf-U1	PF06220.12	1.6e-22	1	1
ENSELUP00000021394	zf-U1	PF06220.12	2.4e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000032080	-	1452	XM_010868799	ENSELUP00000040115	158 (aa)	XP_010867101	UPI0005764374
ENSELUT00000032066	-	747	-	ENSELUP00000021394	214 (aa)	-	-

Gene Model

Click here to download ENSELUG00000020489's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000020489's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000020489	snrpc	100	77.848	ENSELUG00000000815	SNRPC	100	80.503

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000020489	snrpc	99	66.250	ENSANAG00000020588	-	92	70.988	Aotus_nancymaae
ENSELUG00000020489	snrpc	60	85.417	ENSANAG00000019157	-	100	69.325	Aotus_nancymaae
ENSELUG00000020489	snrpc	100	61.491	ENSANAG00000021026	-	100	58.788	Aotus_nancymaae
ENSELUG00000020489	snrpc	100	66.460	ENSANAG00000019726	-	92	69.565	Aotus_nancymaae
ENSELUG00000020489	snrpc	100	57.143	ENSANAG00000021444	-	100	54.545	Aotus_nancymaae
ENSELUG00000020489	snrpc	100	76.250	ENSAMXG00000032641	snrpc	87	84.663	Astyanax_mexicanus
ENSELUG00000020489	snrpc	60	84.211	ENSCAFG00000031775	-	100	70.552	Canis_familiaris
ENSELUG00000020489	snrpc	100	57.927	ENSCAFG00000025525	-	100	63.190	Canis_familiaris
ENSELUG00000020489	snrpc	99	62.893	ENSCAFG00020009944	-	90	63.975	Canis_lupus_dingo
ENSELUG00000020489	snrpc	60	84.211	ENSCAFG00020017383	-	100	70.552	Canis_lupus_dingo
ENSELUG00000020489	snrpc	100	62.195	ENSCHIG00000005039	-	100	61.963	Capra_hircus
ENSELUG00000020489	snrpc	100	58.125	ENSTSYG00000025721	-	100	55.488	Carlito_syrichta
ENSELUG00000020489	snrpc	98	64.024	ENSCCAG00000022751	-	95	69.375	Cebus_capucinus
ENSELUG00000020489	snrpc	59	82.979	ENSCCAG00000036059	-	89	68.098	Cebus_capucinus
ENSELUG00000020489	snrpc	100	60.000	ENSCCAG00000028293	-	100	57.639	Cebus_capucinus
ENSELUG00000020489	snrpc	78	70.079	ENSCLAG00000010242	-	96	59.627	Chinchilla_lanigera
ENSELUG00000020489	snrpc	60	67.368	ENSCHOG00000011439	SNRPC	88	62.733	Choloepus_hoffmanni
ENSELUG00000020489	snrpc	100	74.375	ENSDARG00000009871	snrpc	100	82.822	Danio_rerio
ENSELUG00000020489	snrpc	51	92.593	ENSDNOG00000042403	-	73	85.870	Dasypus_novemcinctus
ENSELUG00000020489	snrpc	85	67.153	ENSDORG00000029823	-	98	65.132	Dipodomys_ordii
ENSELUG00000020489	snrpc	51	88.889	ENSDORG00000005955	Snrpc	66	65.455	Dipodomys_ordii
ENSELUG00000020489	snrpc	51	87.654	ENSETEG00000008756	-	61	91.935	Echinops_telfairi
ENSELUG00000020489	snrpc	77	51.240	ENSEBUG00000011445	snrpc	92	48.125	Eptatretus_burgeri
ENSELUG00000020489	snrpc	59	64.894	ENSEEUG00000014633	SNRPC	90	60.494	Erinaceus_europaeus
ENSELUG00000020489	snrpc	63	60.741	ENSHGLG00000017741	-	100	65.031	Heterocephalus_glaber_female
ENSELUG00000020489	snrpc	81	64.062	ENSHGLG00000005871	-	100	61.491	Heterocephalus_glaber_female
ENSELUG00000020489	snrpc	63	60.741	ENSHGLG00100010786	-	100	65.031	Heterocephalus_glaber_male
ENSELUG00000020489	snrpc	100	68.944	ENSHGLG00100017764	-	100	70.552	Heterocephalus_glaber_male
ENSELUG00000020489	snrpc	100	75.000	ENSIPUG00000024851	snrpc	100	83.436	Ictalurus_punctatus
ENSELUG00000020489	snrpc	59	75.532	ENSMMUG00000045425	-	100	63.804	Macaca_mulatta
ENSELUG00000020489	snrpc	78	56.800	ENSMLEG00000039724	-	81	53.797	Mandrillus_leucophaeus
ENSELUG00000020489	snrpc	100	63.354	ENSMICG00000009130	-	100	71.779	Microcebus_murinus
ENSELUG00000020489	snrpc	69	68.807	ENSMODG00000025263	-	100	61.585	Monodelphis_domestica
ENSELUG00000020489	snrpc	100	57.303	ENSMALG00000001197	snrpc	100	78.882	Monopterus_albus
ENSELUG00000020489	snrpc	60	81.053	ENSODEG00000006008	-	100	68.531	Octodon_degus
ENSELUG00000020489	snrpc	60	85.263	ENSOCUG00000023292	-	100	71.779	Oryctolagus_cuniculus
ENSELUG00000020489	snrpc	54	66.279	ENSORLG00000007308	snrpc	97	78.846	Oryzias_latipes
ENSELUG00000020489	snrpc	60	84.211	ENSOGAG00000026269	-	100	76.074	Otolemur_garnettii
ENSELUG00000020489	snrpc	100	51.220	ENSPPRG00000010967	-	89	48.810	Panthera_pardus
ENSELUG00000020489	snrpc	75	65.600	ENSPTIG00000013329	-	60	70.652	Panthera_tigris_altaica
ENSELUG00000020489	snrpc	100	61.491	ENSPANG00000018228	-	94	62.577	Papio_anubis
ENSELUG00000020489	snrpc	59	95.745	ENSPKIG00000003136	snrpc	100	83.019	Paramormyrops_kingsleyae
ENSELUG00000020489	snrpc	59	89.362	ENSPKIG00000001671	SNRPC	100	73.620	Paramormyrops_kingsleyae
ENSELUG00000020489	snrpc	99	49.697	ENSPMGG00000022162	snrpc	100	77.215	Periophthalmus_magnuspinnatus
ENSELUG00000020489	snrpc	65	69.167	ENSPEMG00000002763	-	100	68.902	Peromyscus_maniculatus_bairdii
ENSELUG00000020489	snrpc	99	62.420	ENSPMAG00000000602	snrpc	98	63.291	Petromyzon_marinus
ENSELUG00000020489	snrpc	99	52.532	ENSPREG00000013017	snrpc	79	67.500	Poecilia_reticulata
ENSELUG00000020489	snrpc	51	92.593	ENSPPYG00000029902	-	85	85.714	Pongo_abelii
ENSELUG00000020489	snrpc	59	67.021	ENSPNYG00000004900	snrpc	100	61.006	Pundamilia_nyererei
ENSELUG00000020489	snrpc	100	75.625	ENSPNAG00000012799	snrpc	100	84.568	Pygocentrus_nattereri
ENSELUG00000020489	snrpc	98	66.250	ENSSBOG00000023189	-	91	62.025	Saimiri_boliviensis_boliviensis
ENSELUG00000020489	snrpc	98	63.291	ENSSBOG00000032882	-	93	66.250	Saimiri_boliviensis_boliviensis
ENSELUG00000020489	snrpc	83	55.034	ENSSBOG00000032361	-	93	57.639	Saimiri_boliviensis_boliviensis
ENSELUG00000020489	snrpc	69	68.807	ENSSHAG00000002972	-	100	61.585	Sarcophilus_harrisii
ENSELUG00000020489	snrpc	59	85.106	ENSSFOG00015019150	snrpc	100	77.914	Scleropages_formosus
ENSELUG00000020489	snrpc	58	96.739	ENSSFOG00015022422	snrpc	100	78.125	Scleropages_formosus
ENSELUG00000020489	snrpc	51	90.123	ENSSARG00000008970	SNRPC	89	62.112	Sorex_araneus
ENSELUG00000020489	snrpc	100	68.098	ENSTNIG00000018307	snrpc	100	74.096	Tetraodon_nigroviridis
ENSELUG00000020489	snrpc	60	81.053	ENSTBEG00000013022	-	100	66.875	Tupaia_belangeri
ENSELUG00000020489	snrpc	60	78.947	ENSTBEG00000015356	-	100	62.893	Tupaia_belangeri
ENSELUG00000020489	snrpc	97	67.722	ENSVVUG00000010467	-	87	69.375	Vulpes_vulpes