EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000020516 (Gene tree)
Gene ID: 105012840
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 22052 bases
Position: chrLG01:5037458-5059509
Accession: 105012840
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000020862	Npa1	PF11707.8	1.1e-86	1	1
ENSELUP00000020948	Npa1	PF11707.8	3.4e-86	1	1
ENSELUP00000020845	Npa1	PF11707.8	3e-60	1	2
ENSELUP00000020845	Npa1	PF11707.8	3e-60	2	2
ENSELUP00000021091	Npa1	PF11707.8	1.9e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000041703	-	8328	-	ENSELUP00000021091	2036 (aa)	-	-
ENSELUT00000031364	-	6579	-	ENSELUP00000020845	2192 (aa)	-	-
ENSELUT00000031499	-	6594	XM_010873950	ENSELUP00000020948	2197 (aa)	XP_010872252	-
ENSELUT00000031388	-	6684	-	ENSELUP00000020862	2227 (aa)	-	-

Gene Model

Click here to download ENSELUG00000020516's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000020516's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000020516	urb1	98	44.947	ENSG00000142207	URB1	99	44.858	Homo_sapiens
ENSELUG00000020516	urb1	96	64.545	ENSAPOG00000020308	urb1	99	56.122	Acanthochromis_polyacanthus
ENSELUG00000020516	urb1	99	44.703	ENSAMEG00000011998	URB1	99	44.787	Ailuropoda_melanoleuca
ENSELUG00000020516	urb1	91	63.444	ENSACIG00000003248	urb1	97	56.180	Amphilophus_citrinellus
ENSELUG00000020516	urb1	96	59.549	ENSAOCG00000010364	urb1	99	59.267	Amphiprion_ocellaris
ENSELUG00000020516	urb1	94	63.166	ENSAPEG00000010758	urb1	99	56.532	Amphiprion_percula
ENSELUG00000020516	urb1	99	56.702	ENSATEG00000011790	urb1	99	56.769	Anabas_testudineus
ENSELUG00000020516	urb1	96	65.000	ENSAPLG00000012791	URB1	97	65.000	Anas_platyrhynchos
ENSELUG00000020516	urb1	99	53.646	ENSACAG00000002817	URB1	97	53.646	Anolis_carolinensis
ENSELUG00000020516	urb1	98	44.733	ENSANAG00000024617	URB1	99	44.777	Aotus_nancymaae
ENSELUG00000020516	urb1	99	56.604	ENSACLG00000024865	urb1	99	56.428	Astatotilapia_calliptera
ENSELUG00000020516	urb1	99	50.066	ENSAMXG00000012306	urb1	99	49.847	Astyanax_mexicanus
ENSELUG00000020516	urb1	98	44.000	ENSBTAG00000012412	URB1	99	43.907	Bos_taurus
ENSELUG00000020516	urb1	98	44.538	ENSCJAG00000009118	URB1	98	44.602	Callithrix_jacchus
ENSELUG00000020516	urb1	99	44.522	ENSCAFG00000008892	URB1	99	44.163	Canis_familiaris
ENSELUG00000020516	urb1	99	44.484	ENSCAFG00020025987	-	99	44.123	Canis_lupus_dingo
ENSELUG00000020516	urb1	99	43.887	ENSCAFG00020025994	-	99	43.528	Canis_lupus_dingo
ENSELUG00000020516	urb1	99	43.879	ENSCHIG00000015645	URB1	99	43.712	Capra_hircus
ENSELUG00000020516	urb1	99	43.761	ENSTSYG00000013286	URB1	99	43.935	Carlito_syrichta
ENSELUG00000020516	urb1	98	43.923	ENSCAPG00000015589	URB1	98	44.525	Cavia_aperea
ENSELUG00000020516	urb1	98	44.828	ENSCPOG00000006748	URB1	99	44.690	Cavia_porcellus
ENSELUG00000020516	urb1	98	44.346	ENSCCAG00000021299	URB1	98	44.656	Cebus_capucinus
ENSELUG00000020516	urb1	98	45.024	ENSCATG00000042630	URB1	99	44.892	Cercocebus_atys
ENSELUG00000020516	urb1	99	45.147	ENSCLAG00000005262	URB1	99	45.186	Chinchilla_lanigera
ENSELUG00000020516	urb1	98	44.547	ENSCSAG00000009584	URB1	99	44.356	Chlorocebus_sabaeus
ENSELUG00000020516	urb1	99	45.640	ENSCPBG00000006454	URB1	99	45.423	Chrysemys_picta_bellii
ENSELUG00000020516	urb1	98	45.258	ENSCANG00000031088	URB1	99	45.024	Colobus_angolensis_palliatus
ENSELUG00000020516	urb1	97	44.563	ENSCGRG00001010616	Urb1	99	44.074	Cricetulus_griseus_chok1gshd
ENSELUG00000020516	urb1	97	44.599	ENSCGRG00000015840	Urb1	99	44.330	Cricetulus_griseus_crigri
ENSELUG00000020516	urb1	95	60.395	ENSCSEG00000012616	urb1	99	54.859	Cynoglossus_semilaevis
ENSELUG00000020516	urb1	95	57.506	ENSCVAG00000009076	urb1	98	57.248	Cyprinodon_variegatus
ENSELUG00000020516	urb1	99	55.599	ENSDARG00000060308	urb1	99	55.556	Danio_rerio
ENSELUG00000020516	urb1	84	47.298	ENSDNOG00000015586	URB1	99	47.247	Dasypus_novemcinctus
ENSELUG00000020516	urb1	98	44.710	ENSDORG00000006735	Urb1	99	44.533	Dipodomys_ordii
ENSELUG00000020516	urb1	89	59.761	ENSETEG00000009080	URB1	89	56.286	Echinops_telfairi
ENSELUG00000020516	urb1	92	53.955	ENSEASG00005007711	URB1	94	52.961	Equus_asinus_asinus
ENSELUG00000020516	urb1	90	55.913	ENSECAG00000013206	URB1	98	47.245	Equus_caballus
ENSELUG00000020516	urb1	51	56.678	ENSEEUG00000003626	-	50	56.090	Erinaceus_europaeus
ENSELUG00000020516	urb1	98	45.144	ENSFCAG00000002177	URB1	99	44.922	Felis_catus
ENSELUG00000020516	urb1	94	52.252	ENSFALG00000004636	URB1	99	43.371	Ficedula_albicollis
ENSELUG00000020516	urb1	99	44.503	ENSFDAG00000007288	URB1	95	44.663	Fukomys_damarensis
ENSELUG00000020516	urb1	99	54.941	ENSFHEG00000000202	urb1	99	54.719	Fundulus_heteroclitus
ENSELUG00000020516	urb1	93	56.343	ENSGMOG00000001838	urb1	94	56.530	Gadus_morhua
ENSELUG00000020516	urb1	97	65.000	ENSGALG00000015887	URB1	95	65.000	Gallus_gallus
ENSELUG00000020516	urb1	96	60.671	ENSGAFG00000020694	urb1	99	54.634	Gambusia_affinis
ENSELUG00000020516	urb1	98	57.490	ENSGACG00000011703	urb1	99	57.105	Gasterosteus_aculeatus
ENSELUG00000020516	urb1	99	45.537	ENSGAGG00000022544	URB1	99	45.317	Gopherus_agassizii
ENSELUG00000020516	urb1	98	45.044	ENSGGOG00000000285	URB1	99	44.912	Gorilla_gorilla
ENSELUG00000020516	urb1	99	56.692	ENSHBUG00000001904	urb1	99	56.516	Haplochromis_burtoni
ENSELUG00000020516	urb1	99	44.125	ENSHGLG00000004907	URB1	99	44.096	Heterocephalus_glaber_female
ENSELUG00000020516	urb1	99	44.489	ENSHGLG00100010749	URB1	99	44.371	Heterocephalus_glaber_male
ENSELUG00000020516	urb1	75	59.453	ENSHCOG00000018683	urb1	99	62.454	Hippocampus_comes
ENSELUG00000020516	urb1	99	60.000	ENSIPUG00000014721	urb1	97	60.000	Ictalurus_punctatus
ENSELUG00000020516	urb1	98	44.568	ENSSTOG00000004539	URB1	99	44.400	Ictidomys_tridecemlineatus
ENSELUG00000020516	urb1	95	59.905	ENSKMAG00000006001	urb1	99	59.667	Kryptolebias_marmoratus
ENSELUG00000020516	urb1	92	64.545	ENSLBEG00000027208	urb1	99	56.273	Labrus_bergylta
ENSELUG00000020516	urb1	99	44.243	ENSLACG00000017059	URB1	100	44.329	Latimeria_chalumnae
ENSELUG00000020516	urb1	99	52.449	ENSLOCG00000009190	urb1	100	52.362	Lepisosteus_oculatus
ENSELUG00000020516	urb1	98	45.571	ENSLAFG00000010407	URB1	98	45.342	Loxodonta_africana
ENSELUG00000020516	urb1	98	45.214	ENSMFAG00000034391	URB1	95	45.024	Macaca_fascicularis
ENSELUG00000020516	urb1	98	45.333	ENSMMUG00000010295	URB1	99	45.143	Macaca_mulatta
ENSELUG00000020516	urb1	98	44.552	ENSMNEG00000032981	URB1	99	44.292	Macaca_nemestrina
ENSELUG00000020516	urb1	98	45.390	ENSMLEG00000041435	URB1	99	45.201	Mandrillus_leucophaeus
ENSELUG00000020516	urb1	99	55.923	ENSMAMG00000011238	urb1	99	55.923	Mastacembelus_armatus
ENSELUG00000020516	urb1	99	55.620	ENSMZEG00005011862	urb1	99	55.441	Maylandia_zebra
ENSELUG00000020516	urb1	96	66.434	ENSMGAG00000014512	URB1	96	66.434	Meleagris_gallopavo
ENSELUG00000020516	urb1	92	55.309	ENSMAUG00000010516	Urb1	99	51.379	Mesocricetus_auratus
ENSELUG00000020516	urb1	98	44.670	ENSMICG00000016424	URB1	99	44.626	Microcebus_murinus
ENSELUG00000020516	urb1	99	43.396	ENSMOCG00000012613	Urb1	99	43.352	Microtus_ochrogaster
ENSELUG00000020516	urb1	99	43.821	ENSMODG00000021076	URB1	99	43.777	Monodelphis_domestica
ENSELUG00000020516	urb1	95	64.742	ENSMALG00000017411	urb1	99	56.843	Monopterus_albus
ENSELUG00000020516	urb1	98	43.901	MGP_CAROLIEiJ_G0020948	Urb1	98	43.744	Mus_caroli
ENSELUG00000020516	urb1	98	43.563	ENSMUSG00000039929	Urb1	98	43.519	Mus_musculus
ENSELUG00000020516	urb1	98	44.077	MGP_PahariEiJ_G0016653	Urb1	98	43.901	Mus_pahari
ENSELUG00000020516	urb1	98	43.637	MGP_SPRETEiJ_G0021854	Urb1	98	43.593	Mus_spretus
ENSELUG00000020516	urb1	99	44.601	ENSMPUG00000001123	URB1	99	44.714	Mustela_putorius_furo
ENSELUG00000020516	urb1	97	44.122	ENSNGAG00000001905	Urb1	97	44.211	Nannospalax_galili
ENSELUG00000020516	urb1	83	57.153	ENSNBRG00000001049	urb1	99	57.013	Neolamprologus_brichardi
ENSELUG00000020516	urb1	98	43.540	ENSNLEG00000026872	URB1	99	43.697	Nomascus_leucogenys
ENSELUG00000020516	urb1	88	57.386	ENSMEUG00000010828	URB1	94	41.042	Notamacropus_eugenii
ENSELUG00000020516	urb1	96	53.153	ENSOPRG00000013482	URB1	99	42.357	Ochotona_princeps
ENSELUG00000020516	urb1	99	44.894	ENSODEG00000002587	URB1	99	44.806	Octodon_degus
ENSELUG00000020516	urb1	99	57.030	ENSONIG00000005599	urb1	99	56.854	Oreochromis_niloticus
ENSELUG00000020516	urb1	98	45.438	ENSOCUG00000009381	URB1	98	45.358	Oryctolagus_cuniculus
ENSELUG00000020516	urb1	99	55.512	ENSORLG00000003429	urb1	99	55.404	Oryzias_latipes
ENSELUG00000020516	urb1	99	55.399	ENSORLG00020013785	urb1	99	55.356	Oryzias_latipes_hni
ENSELUG00000020516	urb1	99	54.157	ENSORLG00015019421	urb1	97	60.274	Oryzias_latipes_hsok
ENSELUG00000020516	urb1	73	69.366	ENSOMEG00000002094	urb1	97	69.366	Oryzias_melastigma
ENSELUG00000020516	urb1	98	45.161	ENSOGAG00000017140	URB1	99	45.398	Otolemur_garnettii
ENSELUG00000020516	urb1	94	47.972	ENSOARG00000013679	URB1	97	48.025	Ovis_aries
ENSELUG00000020516	urb1	98	44.976	ENSPPAG00000003423	URB1	99	44.887	Pan_paniscus
ENSELUG00000020516	urb1	98	45.237	ENSPPRG00000023131	URB1	99	44.927	Panthera_pardus
ENSELUG00000020516	urb1	86	46.104	ENSPTIG00000016125	URB1	93	46.003	Panthera_tigris_altaica
ENSELUG00000020516	urb1	98	44.887	ENSPTRG00000013852	URB1	99	44.799	Pan_troglodytes
ENSELUG00000020516	urb1	98	45.346	ENSPANG00000021964	URB1	99	45.157	Papio_anubis
ENSELUG00000020516	urb1	99	54.641	ENSPKIG00000003683	urb1	99	54.422	Paramormyrops_kingsleyae
ENSELUG00000020516	urb1	98	44.646	ENSPEMG00000021205	Urb1	98	44.494	Peromyscus_maniculatus_bairdii
ENSELUG00000020516	urb1	78	31.897	ENSPMAG00000009733	URB1	79	38.295	Petromyzon_marinus
ENSELUG00000020516	urb1	99	42.870	ENSPCIG00000016350	URB1	99	43.389	Phascolarctos_cinereus
ENSELUG00000020516	urb1	99	54.122	ENSPLAG00000004371	urb1	99	54.975	Poecilia_latipinna
ENSELUG00000020516	urb1	99	55.268	ENSPMEG00000006634	urb1	99	55.097	Poecilia_mexicana
ENSELUG00000020516	urb1	99	55.473	ENSPREG00000013453	urb1	99	55.272	Poecilia_reticulata
ENSELUG00000020516	urb1	98	44.710	ENSPPYG00000011359	URB1	99	44.577	Pongo_abelii
ENSELUG00000020516	urb1	95	51.322	ENSPCAG00000007430	URB1	94	51.322	Procavia_capensis
ENSELUG00000020516	urb1	98	44.675	ENSPCOG00000022695	URB1	99	45.049	Propithecus_coquereli
ENSELUG00000020516	urb1	98	43.839	ENSPVAG00000000889	URB1	99	43.908	Pteropus_vampyrus
ENSELUG00000020516	urb1	96	61.891	ENSPNYG00000010589	urb1	99	55.786	Pundamilia_nyererei
ENSELUG00000020516	urb1	99	50.087	ENSPNAG00000019324	urb1	99	49.978	Pygocentrus_nattereri
ENSELUG00000020516	urb1	98	43.618	ENSRNOG00000002080	Urb1	98	43.371	Rattus_norvegicus
ENSELUG00000020516	urb1	98	45.346	ENSRBIG00000033122	URB1	99	45.113	Rhinopithecus_bieti
ENSELUG00000020516	urb1	98	45.346	ENSRROG00000040237	URB1	99	45.113	Rhinopithecus_roxellana
ENSELUG00000020516	urb1	98	44.783	ENSSBOG00000027672	URB1	99	44.686	Saimiri_boliviensis_boliviensis
ENSELUG00000020516	urb1	99	42.988	ENSSHAG00000005140	URB1	99	42.901	Sarcophilus_harrisii
ENSELUG00000020516	urb1	92	57.183	ENSSFOG00015000339	urb1	99	56.866	Scleropages_formosus
ENSELUG00000020516	urb1	99	58.555	ENSSMAG00000003782	urb1	99	58.537	Scophthalmus_maximus
ENSELUG00000020516	urb1	99	59.694	ENSSDUG00000012313	urb1	99	59.484	Seriola_dumerili
ENSELUG00000020516	urb1	99	59.353	ENSSLDG00000023179	urb1	99	59.178	Seriola_lalandi_dorsalis
ENSELUG00000020516	urb1	99	45.182	ENSSPUG00000012447	URB1	100	44.931	Sphenodon_punctatus
ENSELUG00000020516	urb1	99	57.394	ENSSPAG00000006325	urb1	99	57.262	Stegastes_partitus
ENSELUG00000020516	urb1	94	52.687	ENSSSCG00000032024	URB1	99	44.548	Sus_scrofa
ENSELUG00000020516	urb1	73	48.100	ENSTGUG00000013442	URB1	100	48.005	Taeniopygia_guttata
ENSELUG00000020516	urb1	99	54.989	ENSTRUG00000009372	urb1	99	54.805	Takifugu_rubripes
ENSELUG00000020516	urb1	98	53.103	ENSTNIG00000016277	urb1	99	52.902	Tetraodon_nigroviridis
ENSELUG00000020516	urb1	71	75.676	ENSTBEG00000010044	URB1	60	75.676	Tupaia_belangeri
ENSELUG00000020516	urb1	85	64.583	ENSTTRG00000007712	URB1	83	64.583	Tursiops_truncatus
ENSELUG00000020516	urb1	99	44.396	ENSUAMG00000012231	URB1	99	44.328	Ursus_americanus
ENSELUG00000020516	urb1	82	56.635	ENSUMAG00000017419	URB1	91	56.280	Ursus_maritimus
ENSELUG00000020516	urb1	65	65.278	ENSVPAG00000001164	URB1	64	65.972	Vicugna_pacos
ENSELUG00000020516	urb1	95	55.494	ENSVVUG00000000551	URB1	93	55.923	Vulpes_vulpes
ENSELUG00000020516	urb1	98	44.444	ENSXETG00000009895	urb1	99	44.031	Xenopus_tropicalis
ENSELUG00000020516	urb1	96	62.481	ENSXCOG00000005500	urb1	97	57.550	Xiphophorus_couchianus
ENSELUG00000020516	urb1	97	63.429	ENSXMAG00000007253	urb1	97	57.709	Xiphophorus_maculatus