EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000020646 (Gene tree)
Gene ID: 105011501
Gene Symbol: polr2e
Alias: RPAB1
Full Name: RNA polymerase II subunit E
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 4662 bases
Position: chrLG08:10972207-10976868
Accession: 105011501
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000021462	RNA_pol_Rpb5_N	PF03871.14	1.1e-34	1	1
ENSELUP00000040159	RNA_pol_Rpb5_N	PF03871.14	1.5e-34	1	1
ENSELUP00000040159	RNA_pol_Rpb5_C	PF01191.19	7.2e-34	1	1
ENSELUP00000021462	RNA_pol_Rpb5_C	PF01191.19	9.8e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000032146	-	552	-	ENSELUP00000021462	183 (aa)	-	-
ENSELUT00000032162	-	3595	-	ENSELUP00000040159	210 (aa)	-	C1BWI4

Gene Model

Click here to download ENSELUG00000020646's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03020	RNA polymerase	KEGG
els04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000020646's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000020646	polr2e	100	99.048	ENSELUG00000005815	POLR2E	100	99.048

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000020646	polr2e	100	92.857	ENSG00000099817	POLR2E	100	92.857	Homo_sapiens
ENSELUG00000020646	polr2e	100	97.143	ENSAPOG00000002935	polr2eb	100	97.143	Acanthochromis_polyacanthus
ENSELUG00000020646	polr2e	100	93.333	ENSAMEG00000003159	POLR2E	100	93.333	Ailuropoda_melanoleuca
ENSELUG00000020646	polr2e	100	96.175	ENSACIG00000024371	polr2eb	100	96.175	Amphilophus_citrinellus
ENSELUG00000020646	polr2e	100	97.143	ENSAOCG00000018166	polr2eb	100	97.143	Amphiprion_ocellaris
ENSELUG00000020646	polr2e	100	97.143	ENSAPEG00000009000	polr2eb	100	97.143	Amphiprion_percula
ENSELUG00000020646	polr2e	100	97.143	ENSATEG00000023760	polr2eb	100	97.143	Anabas_testudineus
ENSELUG00000020646	polr2e	100	93.333	ENSANAG00000038488	POLR2E	100	93.333	Aotus_nancymaae
ENSELUG00000020646	polr2e	100	96.667	ENSACLG00000005254	polr2eb	100	96.667	Astatotilapia_calliptera
ENSELUG00000020646	polr2e	100	96.667	ENSAMXG00000018915	POLR2E	100	96.667	Astyanax_mexicanus
ENSELUG00000020646	polr2e	100	93.333	ENSBTAG00000020776	POLR2E	100	93.333	Bos_taurus
ENSELUG00000020646	polr2e	99	77.885	WBGene00019246	rpb-5	99	77.885	Caenorhabditis_elegans
ENSELUG00000020646	polr2e	67	87.857	ENSCJAG00000007666	-	77	87.857	Callithrix_jacchus
ENSELUG00000020646	polr2e	100	90.476	ENSCAFG00000019546	POLR2E	100	90.476	Canis_familiaris
ENSELUG00000020646	polr2e	100	93.333	ENSCAFG00020017111	POLR2E	100	93.333	Canis_lupus_dingo
ENSELUG00000020646	polr2e	100	93.333	ENSCHIG00000014151	POLR2E	100	93.333	Capra_hircus
ENSELUG00000020646	polr2e	100	78.571	ENSTSYG00000026377	POLR2E	100	78.571	Carlito_syrichta
ENSELUG00000020646	polr2e	91	93.229	ENSCAPG00000010843	POLR2E	93	93.229	Cavia_aperea
ENSELUG00000020646	polr2e	100	93.333	ENSCPOG00000001542	POLR2E	100	93.333	Cavia_porcellus
ENSELUG00000020646	polr2e	100	93.333	ENSCCAG00000025658	POLR2E	100	93.333	Cebus_capucinus
ENSELUG00000020646	polr2e	100	93.333	ENSCATG00000008926	POLR2E	100	93.333	Cercocebus_atys
ENSELUG00000020646	polr2e	98	71.220	ENSCLAG00000009238	-	100	71.220	Chinchilla_lanigera
ENSELUG00000020646	polr2e	100	93.333	ENSCLAG00000014874	-	100	93.333	Chinchilla_lanigera
ENSELUG00000020646	polr2e	100	93.333	ENSCSAG00000012336	POLR2E	100	93.333	Chlorocebus_sabaeus
ENSELUG00000020646	polr2e	100	93.810	ENSCPBG00000009702	POLR2E	100	93.810	Chrysemys_picta_bellii
ENSELUG00000020646	polr2e	100	85.238	ENSCING00000024933	-	99	85.238	Ciona_intestinalis
ENSELUG00000020646	polr2e	100	93.333	ENSCANG00000025560	POLR2E	100	93.333	Colobus_angolensis_palliatus
ENSELUG00000020646	polr2e	100	93.333	ENSCGRG00001022927	Polr2e	100	93.333	Cricetulus_griseus_chok1gshd
ENSELUG00000020646	polr2e	100	89.302	ENSCGRG00000016441	Polr2e	100	89.302	Cricetulus_griseus_crigri
ENSELUG00000020646	polr2e	100	95.238	ENSCSEG00000007107	polr2eb	100	94.536	Cynoglossus_semilaevis
ENSELUG00000020646	polr2e	100	97.143	ENSCVAG00000019940	polr2eb	100	97.143	Cyprinodon_variegatus
ENSELUG00000020646	polr2e	100	96.190	ENSDARG00000026183	polr2eb	100	96.190	Danio_rerio
ENSELUG00000020646	polr2e	90	92.632	ENSDNOG00000044994	POLR2E	84	92.632	Dasypus_novemcinctus
ENSELUG00000020646	polr2e	100	93.333	ENSDORG00000001154	Polr2e	100	93.333	Dipodomys_ordii
ENSELUG00000020646	polr2e	99	84.211	FBgn0033571	Rpb5	99	84.211	Drosophila_melanogaster
ENSELUG00000020646	polr2e	75	89.809	ENSEBUG00000010159	-	76	89.809	Eptatretus_burgeri
ENSELUG00000020646	polr2e	69	86.207	ENSEASG00005021615	POLR2E	67	80.864	Equus_asinus_asinus
ENSELUG00000020646	polr2e	100	92.350	ENSECAG00000011124	POLR2E	100	92.350	Equus_caballus
ENSELUG00000020646	polr2e	100	92.857	ENSFCAG00000007318	POLR2E	100	92.857	Felis_catus
ENSELUG00000020646	polr2e	91	93.750	ENSFALG00000013986	POLR2E	99	93.750	Ficedula_albicollis
ENSELUG00000020646	polr2e	100	93.333	ENSFDAG00000014539	POLR2E	100	93.333	Fukomys_damarensis
ENSELUG00000020646	polr2e	100	97.143	ENSFHEG00000022398	polr2eb	100	97.143	Fundulus_heteroclitus
ENSELUG00000020646	polr2e	100	96.667	ENSGMOG00000007615	polr2eb	100	96.667	Gadus_morhua
ENSELUG00000020646	polr2e	100	93.810	ENSGALG00000002591	POLR2E	100	93.810	Gallus_gallus
ENSELUG00000020646	polr2e	100	96.667	ENSGAFG00000005087	polr2eb	100	96.667	Gambusia_affinis
ENSELUG00000020646	polr2e	100	96.667	ENSGACG00000013247	polr2eb	100	96.667	Gasterosteus_aculeatus
ENSELUG00000020646	polr2e	100	93.810	ENSGAGG00000008356	POLR2E	100	93.810	Gopherus_agassizii
ENSELUG00000020646	polr2e	100	93.333	ENSGGOG00000011267	POLR2E	100	93.333	Gorilla_gorilla
ENSELUG00000020646	polr2e	68	91.549	ENSHBUG00000011099	polr2eb	100	91.549	Haplochromis_burtoni
ENSELUG00000020646	polr2e	100	93.333	ENSHGLG00000013330	POLR2E	100	93.333	Heterocephalus_glaber_female
ENSELUG00000020646	polr2e	100	93.333	ENSHGLG00100011014	POLR2E	100	93.333	Heterocephalus_glaber_male
ENSELUG00000020646	polr2e	53	95.536	ENSHCOG00000012099	-	88	95.536	Hippocampus_comes
ENSELUG00000020646	polr2e	100	95.714	ENSHCOG00000000906	polr2eb	100	95.714	Hippocampus_comes
ENSELUG00000020646	polr2e	100	97.143	ENSIPUG00000019801	polr2e	100	97.143	Ictalurus_punctatus
ENSELUG00000020646	polr2e	100	93.333	ENSSTOG00000002853	POLR2E	100	93.333	Ictidomys_tridecemlineatus
ENSELUG00000020646	polr2e	100	93.333	ENSJJAG00000016595	-	100	93.333	Jaculus_jaculus
ENSELUG00000020646	polr2e	100	86.339	ENSJJAG00000003145	-	100	86.339	Jaculus_jaculus
ENSELUG00000020646	polr2e	75	77.848	ENSJJAG00000015812	-	99	77.848	Jaculus_jaculus
ENSELUG00000020646	polr2e	100	97.143	ENSKMAG00000005954	polr2eb	100	97.143	Kryptolebias_marmoratus
ENSELUG00000020646	polr2e	100	97.143	ENSLBEG00000024802	polr2eb	100	97.143	Labrus_bergylta
ENSELUG00000020646	polr2e	100	93.810	ENSLACG00000013686	POLR2E	100	93.810	Latimeria_chalumnae
ENSELUG00000020646	polr2e	77	96.296	ENSLOCG00000004599	POLR2E	100	96.296	Lepisosteus_oculatus
ENSELUG00000020646	polr2e	100	74.057	ENSLAFG00000025587	POLR2E	100	74.057	Loxodonta_africana
ENSELUG00000020646	polr2e	100	93.333	ENSMFAG00000002884	POLR2E	100	93.333	Macaca_fascicularis
ENSELUG00000020646	polr2e	100	93.333	ENSMMUG00000013927	POLR2E	100	93.333	Macaca_mulatta
ENSELUG00000020646	polr2e	100	63.033	ENSMNEG00000033452	-	100	63.033	Macaca_nemestrina
ENSELUG00000020646	polr2e	100	93.333	ENSMNEG00000034046	-	100	93.333	Macaca_nemestrina
ENSELUG00000020646	polr2e	92	76.684	ENSMLEG00000012405	POLR2E	94	76.684	Mandrillus_leucophaeus
ENSELUG00000020646	polr2e	100	97.143	ENSMAMG00000018703	polr2eb	100	97.143	Mastacembelus_armatus
ENSELUG00000020646	polr2e	100	96.175	ENSMZEG00005010796	polr2eb	100	96.175	Maylandia_zebra
ENSELUG00000020646	polr2e	100	92.891	ENSMGAG00000003769	POLR2E	100	92.891	Meleagris_gallopavo
ENSELUG00000020646	polr2e	92	92.746	ENSMAUG00000010125	-	100	93.194	Mesocricetus_auratus
ENSELUG00000020646	polr2e	100	62.381	ENSMAUG00000011003	-	100	62.381	Mesocricetus_auratus
ENSELUG00000020646	polr2e	100	93.333	ENSMICG00000013063	POLR2E	100	93.333	Microcebus_murinus
ENSELUG00000020646	polr2e	100	93.333	ENSMOCG00000013414	Polr2e	100	93.333	Microtus_ochrogaster
ENSELUG00000020646	polr2e	91	87.435	ENSMMOG00000001167	polr2eb	88	87.435	Mola_mola
ENSELUG00000020646	polr2e	100	94.536	ENSMMOG00000001161	polr2eb	100	94.536	Mola_mola
ENSELUG00000020646	polr2e	100	93.810	ENSMODG00000005494	POLR2E	100	93.810	Monodelphis_domestica
ENSELUG00000020646	polr2e	100	96.190	ENSMALG00000021888	polr2eb	100	96.190	Monopterus_albus
ENSELUG00000020646	polr2e	100	93.333	MGP_CAROLIEiJ_G0015561	Polr2e	100	93.333	Mus_caroli
ENSELUG00000020646	polr2e	100	93.333	ENSMUSG00000004667	Polr2e	100	93.333	Mus_musculus
ENSELUG00000020646	polr2e	100	93.333	MGP_PahariEiJ_G0030974	Polr2e	100	93.333	Mus_pahari
ENSELUG00000020646	polr2e	100	93.333	MGP_SPRETEiJ_G0016379	Polr2e	100	93.333	Mus_spretus
ENSELUG00000020646	polr2e	100	92.381	ENSMPUG00000008953	POLR2E	100	92.381	Mustela_putorius_furo
ENSELUG00000020646	polr2e	66	89.855	ENSMLUG00000006376	-	93	84.000	Myotis_lucifugus
ENSELUG00000020646	polr2e	100	93.333	ENSMLUG00000013193	POLR2E	100	93.333	Myotis_lucifugus
ENSELUG00000020646	polr2e	85	70.391	ENSNGAG00000017344	-	96	70.391	Nannospalax_galili
ENSELUG00000020646	polr2e	100	93.333	ENSNGAG00000001147	Polr2e	100	93.333	Nannospalax_galili
ENSELUG00000020646	polr2e	100	96.175	ENSNBRG00000022772	polr2eb	100	96.175	Neolamprologus_brichardi
ENSELUG00000020646	polr2e	100	70.952	ENSNLEG00000031364	-	100	70.952	Nomascus_leucogenys
ENSELUG00000020646	polr2e	100	90.047	ENSNLEG00000001207	-	100	90.047	Nomascus_leucogenys
ENSELUG00000020646	polr2e	100	81.905	ENSOPRG00000008331	POLR2E	100	81.905	Ochotona_princeps
ENSELUG00000020646	polr2e	89	82.258	ENSODEG00000007985	-	100	82.258	Octodon_degus
ENSELUG00000020646	polr2e	100	70.833	ENSODEG00000011490	-	100	70.833	Octodon_degus
ENSELUG00000020646	polr2e	100	93.333	ENSODEG00000013230	-	100	93.333	Octodon_degus
ENSELUG00000020646	polr2e	100	97.143	ENSONIG00000002519	polr2eb	100	97.143	Oreochromis_niloticus
ENSELUG00000020646	polr2e	100	96.667	ENSORLG00000015346	polr2eb	100	96.667	Oryzias_latipes
ENSELUG00000020646	polr2e	100	96.667	ENSORLG00020020700	polr2e	100	96.667	Oryzias_latipes_hni
ENSELUG00000020646	polr2e	100	96.667	ENSORLG00015016842	polr2e	100	96.667	Oryzias_latipes_hsok
ENSELUG00000020646	polr2e	100	97.143	ENSOMEG00000002709	polr2eb	100	97.143	Oryzias_melastigma
ENSELUG00000020646	polr2e	100	93.333	ENSOGAG00000012311	POLR2E	100	93.333	Otolemur_garnettii
ENSELUG00000020646	polr2e	100	93.333	ENSOARG00000010994	POLR2E	100	93.333	Ovis_aries
ENSELUG00000020646	polr2e	91	93.194	ENSPPAG00000003145	POLR2E	100	93.194	Pan_paniscus
ENSELUG00000020646	polr2e	100	92.857	ENSPPRG00000000777	POLR2E	100	92.857	Panthera_pardus
ENSELUG00000020646	polr2e	90	83.030	ENSPTIG00000012237	POLR2E	98	88.158	Panthera_tigris_altaica
ENSELUG00000020646	polr2e	100	93.333	ENSPTRG00000010183	POLR2E	100	93.333	Pan_troglodytes
ENSELUG00000020646	polr2e	100	93.333	ENSPANG00000018011	POLR2E	100	93.333	Papio_anubis
ENSELUG00000020646	polr2e	100	97.143	ENSPKIG00000024123	POLR2E	100	97.143	Paramormyrops_kingsleyae
ENSELUG00000020646	polr2e	100	96.190	ENSPKIG00000009607	POLR2E	100	96.190	Paramormyrops_kingsleyae
ENSELUG00000020646	polr2e	98	90.244	ENSPSIG00000002870	POLR2E	99	90.244	Pelodiscus_sinensis
ENSELUG00000020646	polr2e	100	96.721	ENSPMGG00000014354	polr2eb	100	96.721	Periophthalmus_magnuspinnatus
ENSELUG00000020646	polr2e	100	93.333	ENSPEMG00000023261	Polr2e	100	93.333	Peromyscus_maniculatus_bairdii
ENSELUG00000020646	polr2e	90	93.122	ENSPCIG00000007312	POLR2E	75	93.122	Phascolarctos_cinereus
ENSELUG00000020646	polr2e	100	96.667	ENSPFOG00000005734	polr2eb	100	96.667	Poecilia_formosa
ENSELUG00000020646	polr2e	100	96.667	ENSPLAG00000014496	polr2eb	100	96.667	Poecilia_latipinna
ENSELUG00000020646	polr2e	100	96.667	ENSPMEG00000008053	polr2eb	100	96.667	Poecilia_mexicana
ENSELUG00000020646	polr2e	100	96.667	ENSPREG00000006489	polr2eb	100	96.667	Poecilia_reticulata
ENSELUG00000020646	polr2e	100	87.678	ENSPPYG00000009305	POLR2E	100	87.678	Pongo_abelii
ENSELUG00000020646	polr2e	53	90.090	ENSPCAG00000016605	POLR2E	100	90.090	Procavia_capensis
ENSELUG00000020646	polr2e	100	93.333	ENSPCOG00000014491	POLR2E	100	93.333	Propithecus_coquereli
ENSELUG00000020646	polr2e	75	100.000	ENSPVAG00000007718	-	55	94.828	Pteropus_vampyrus
ENSELUG00000020646	polr2e	90	96.316	ENSPNYG00000019797	polr2eb	96	96.316	Pundamilia_nyererei
ENSELUG00000020646	polr2e	100	96.667	ENSPNAG00000026263	POLR2E	100	96.667	Pygocentrus_nattereri
ENSELUG00000020646	polr2e	100	93.333	ENSRNOG00000013545	Polr2e	100	93.333	Rattus_norvegicus
ENSELUG00000020646	polr2e	100	68.720	ENSRBIG00000027259	-	100	68.720	Rhinopithecus_bieti
ENSELUG00000020646	polr2e	100	93.333	ENSRBIG00000028726	-	100	93.333	Rhinopithecus_bieti
ENSELUG00000020646	polr2e	100	93.333	ENSRROG00000043763	POLR2E	100	93.333	Rhinopithecus_roxellana
ENSELUG00000020646	polr2e	99	44.240	YBR154C	RPB5	98	44.240	Saccharomyces_cerevisiae
ENSELUG00000020646	polr2e	100	93.333	ENSSBOG00000027241	POLR2E	100	93.333	Saimiri_boliviensis_boliviensis
ENSELUG00000020646	polr2e	100	93.810	ENSSHAG00000010690	POLR2E	100	93.810	Sarcophilus_harrisii
ENSELUG00000020646	polr2e	100	97.143	ENSSFOG00015006073	polr2e	100	97.143	Scleropages_formosus
ENSELUG00000020646	polr2e	100	97.143	ENSSMAG00000012782	polr2eb	100	97.143	Scophthalmus_maximus
ENSELUG00000020646	polr2e	100	97.143	ENSSDUG00000003352	polr2eb	100	97.143	Seriola_dumerili
ENSELUG00000020646	polr2e	100	97.143	ENSSLDG00000004965	polr2eb	100	97.143	Seriola_lalandi_dorsalis
ENSELUG00000020646	polr2e	100	93.810	ENSSPUG00000006114	POLR2E	100	93.810	Sphenodon_punctatus
ENSELUG00000020646	polr2e	100	97.143	ENSSPAG00000017556	polr2eb	100	97.143	Stegastes_partitus
ENSELUG00000020646	polr2e	100	93.333	ENSSSCG00000021472	POLR2E	100	93.333	Sus_scrofa
ENSELUG00000020646	polr2e	64	94.068	ENSTGUG00000000922	POLR2E	99	87.143	Taeniopygia_guttata
ENSELUG00000020646	polr2e	100	96.721	ENSTRUG00000018238	polr2eb	100	96.721	Takifugu_rubripes
ENSELUG00000020646	polr2e	100	97.143	ENSTNIG00000013187	polr2eb	100	97.143	Tetraodon_nigroviridis
ENSELUG00000020646	polr2e	100	92.857	ENSTTRG00000001484	POLR2E	100	92.857	Tursiops_truncatus
ENSELUG00000020646	polr2e	100	91.803	ENSUAMG00000009166	POLR2E	100	91.803	Ursus_americanus
ENSELUG00000020646	polr2e	100	93.333	ENSVVUG00000022818	POLR2E	54	93.333	Vulpes_vulpes
ENSELUG00000020646	polr2e	100	94.762	ENSXETG00000003291	polr2e	100	94.762	Xenopus_tropicalis
ENSELUG00000020646	polr2e	100	96.175	ENSXCOG00000009197	polr2eb	100	96.175	Xiphophorus_couchianus
ENSELUG00000020646	polr2e	100	96.667	ENSXMAG00000026495	polr2eb	100	96.667	Xiphophorus_maculatus