EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000020917 (Gene tree)
Gene ID: 105024419
Gene Symbol: upf1
Alias: -
Full Name: regulator of nonsense transcripts 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 27999 bases
Position: chrLG03:7155209-7183207
Accession: 105024419
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000040396	UPF1_Zn_bind	PF09416.10	3.2e-75	1	1
ENSELUP00000040410	UPF1_Zn_bind	PF09416.10	4e-75	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000032648	-	6210	XM_013131424	ENSELUP00000040410	1103 (aa)	XP_012986878	UPI0006619928
ENSELUT00000042020	-	3518	-	ENSELUP00000040396	1017 (aa)	-	-

Gene Model

Click here to download ENSELUG00000020917's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03013	RNA transport	KEGG
els03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000020917's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000020917	upf1	100	92.529	ENSELUG00000012916	-	100	93.255

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000020917	upf1	100	90.506	ENSG00000005007	UPF1	100	90.240	Homo_sapiens
ENSELUG00000020917	upf1	100	93.268	ENSAPOG00000023773	upf1	100	94.434	Acanthochromis_polyacanthus
ENSELUG00000020917	upf1	100	92.238	ENSAPOG00000010916	-	100	92.690	Acanthochromis_polyacanthus
ENSELUG00000020917	upf1	100	90.194	ENSAMEG00000011474	UPF1	100	90.018	Ailuropoda_melanoleuca
ENSELUG00000020917	upf1	93	92.539	ENSACIG00000010985	-	100	92.546	Amphilophus_citrinellus
ENSELUG00000020917	upf1	100	93.659	ENSACIG00000019949	upf1	100	93.953	Amphilophus_citrinellus
ENSELUG00000020917	upf1	100	93.268	ENSAOCG00000018519	upf1	100	94.434	Amphiprion_ocellaris
ENSELUG00000020917	upf1	100	92.329	ENSAOCG00000006352	-	100	92.780	Amphiprion_ocellaris
ENSELUG00000020917	upf1	100	92.238	ENSAPEG00000006292	-	100	92.780	Amphiprion_percula
ENSELUG00000020917	upf1	100	93.268	ENSAPEG00000016344	upf1	100	94.434	Amphiprion_percula
ENSELUG00000020917	upf1	100	92.058	ENSATEG00000016606	-	100	92.599	Anabas_testudineus
ENSELUG00000020917	upf1	100	92.781	ENSATEG00000017867	upf1	100	93.996	Anabas_testudineus
ENSELUG00000020917	upf1	95	92.083	ENSAPLG00000009175	UPF1	100	91.800	Anas_platyrhynchos
ENSELUG00000020917	upf1	95	89.944	ENSANAG00000024107	UPF1	96	89.662	Aotus_nancymaae
ENSELUG00000020917	upf1	100	92.141	ENSACLG00000022630	-	100	92.502	Astatotilapia_calliptera
ENSELUG00000020917	upf1	100	93.841	ENSACLG00000007181	upf1	100	94.134	Astatotilapia_calliptera
ENSELUG00000020917	upf1	100	93.484	ENSAMXG00000042187	upf1	100	94.480	Astyanax_mexicanus
ENSELUG00000020917	upf1	100	90.212	ENSBTAG00000020922	UPF1	100	90.035	Bos_taurus
ENSELUG00000020917	upf1	86	55.125	WBGene00004880	smg-2	89	51.550	Caenorhabditis_elegans
ENSELUG00000020917	upf1	100	89.798	ENSCJAG00000019627	UPF1	100	89.534	Callithrix_jacchus
ENSELUG00000020917	upf1	100	89.974	ENSCAFG00000014578	UPF1	100	89.710	Canis_familiaris
ENSELUG00000020917	upf1	100	90.683	ENSCAFG00020012347	UPF1	100	90.417	Canis_lupus_dingo
ENSELUG00000020917	upf1	100	90.925	ENSCHIG00000011018	UPF1	100	90.747	Capra_hircus
ENSELUG00000020917	upf1	95	91.682	ENSTSYG00000008877	UPF1	98	91.399	Carlito_syrichta
ENSELUG00000020917	upf1	96	91.121	ENSCAPG00000005758	UPF1	95	91.399	Cavia_aperea
ENSELUG00000020917	upf1	100	91.137	ENSCPOG00000025463	UPF1	100	90.779	Cavia_porcellus
ENSELUG00000020917	upf1	100	90.506	ENSCCAG00000032175	UPF1	100	90.240	Cebus_capucinus
ENSELUG00000020917	upf1	94	91.841	ENSCATG00000040306	UPF1	98	91.399	Cercocebus_atys
ENSELUG00000020917	upf1	95	91.871	ENSCLAG00000004037	UPF1	99	91.588	Chinchilla_lanigera
ENSELUG00000020917	upf1	100	90.506	ENSCSAG00000005276	UPF1	100	90.240	Chlorocebus_sabaeus
ENSELUG00000020917	upf1	100	91.169	ENSCPBG00000012513	UPF1	100	90.633	Chrysemys_picta_bellii
ENSELUG00000020917	upf1	83	79.108	ENSCING00000021399	-	99	79.108	Ciona_intestinalis
ENSELUG00000020917	upf1	99	71.825	ENSCSAVG00000006533	-	99	71.710	Ciona_savignyi
ENSELUG00000020917	upf1	95	91.777	ENSCANG00000029819	UPF1	97	91.493	Colobus_angolensis_palliatus
ENSELUG00000020917	upf1	100	90.642	ENSCGRG00001021067	Upf1	100	90.374	Cricetulus_griseus_chok1gshd
ENSELUG00000020917	upf1	95	91.493	ENSCGRG00000013480	Upf1	98	91.210	Cricetulus_griseus_crigri
ENSELUG00000020917	upf1	100	92.502	ENSCSEG00000016159	-	100	92.593	Cynoglossus_semilaevis
ENSELUG00000020917	upf1	100	88.166	ENSCSEG00000017239	upf1	100	87.986	Cynoglossus_semilaevis
ENSELUG00000020917	upf1	100	91.968	ENSCVAG00000010561	upf1	100	92.419	Cyprinodon_variegatus
ENSELUG00000020917	upf1	100	93.303	ENSDARG00000016302	upf1	100	94.299	Danio_rerio
ENSELUG00000020917	upf1	95	89.330	ENSDORG00000009984	Upf1	95	89.046	Dipodomys_ordii
ENSELUG00000020917	upf1	91	72.009	FBgn0030354	Upf1	81	70.894	Drosophila_melanogaster
ENSELUG00000020917	upf1	59	85.785	ENSEBUG00000010069	upf1	96	85.785	Eptatretus_burgeri
ENSELUG00000020917	upf1	100	90.925	ENSEASG00005006549	UPF1	100	90.658	Equus_asinus_asinus
ENSELUG00000020917	upf1	100	90.925	ENSECAG00000010639	UPF1	100	90.658	Equus_caballus
ENSELUG00000020917	upf1	100	89.886	ENSFCAG00000009757	UPF1	100	89.622	Felis_catus
ENSELUG00000020917	upf1	95	92.417	ENSFALG00000009312	UPF1	96	92.133	Ficedula_albicollis
ENSELUG00000020917	upf1	95	91.777	ENSFDAG00000014816	UPF1	99	91.493	Fukomys_damarensis
ENSELUG00000020917	upf1	87	94.279	ENSFHEG00000016276	-	96	94.279	Fundulus_heteroclitus
ENSELUG00000020917	upf1	100	90.942	ENSFHEG00000006428	upf1	100	90.493	Fundulus_heteroclitus
ENSELUG00000020917	upf1	100	91.510	ENSGMOG00000007541	upf1	100	91.689	Gadus_morhua
ENSELUG00000020917	upf1	100	90.844	ENSGALG00000003220	UPF1	100	90.489	Gallus_gallus
ENSELUG00000020917	upf1	68	95.924	ENSGAFG00000015443	-	85	95.108	Gambusia_affinis
ENSELUG00000020917	upf1	100	91.968	ENSGAFG00000004831	upf1	100	92.509	Gambusia_affinis
ENSELUG00000020917	upf1	100	91.398	ENSGAGG00000022217	UPF1	100	91.219	Gopherus_agassizii
ENSELUG00000020917	upf1	95	92.557	ENSGGOG00000002608	UPF1	99	92.271	Gorilla_gorilla
ENSELUG00000020917	upf1	89	94.805	ENSHBUG00000014694	upf1	100	94.805	Haplochromis_burtoni
ENSELUG00000020917	upf1	92	93.213	ENSHBUG00000008939	upf1	95	95.952	Haplochromis_burtoni
ENSELUG00000020917	upf1	100	89.886	ENSHGLG00000010900	UPF1	100	89.622	Heterocephalus_glaber_female
ENSELUG00000020917	upf1	95	90.170	ENSHGLG00100005904	UPF1	96	89.887	Heterocephalus_glaber_male
ENSELUG00000020917	upf1	100	91.877	ENSHCOG00000008918	upf1	100	92.599	Hippocampus_comes
ENSELUG00000020917	upf1	100	93.575	ENSIPUG00000005108	UPF1	100	94.751	Ictalurus_punctatus
ENSELUG00000020917	upf1	100	90.506	ENSSTOG00000009196	UPF1	100	90.240	Ictidomys_tridecemlineatus
ENSELUG00000020917	upf1	100	90.088	ENSJJAG00000023151	Upf1	100	89.823	Jaculus_jaculus
ENSELUG00000020917	upf1	100	91.787	ENSKMAG00000004962	upf1	100	92.148	Kryptolebias_marmoratus
ENSELUG00000020917	upf1	100	92.870	ENSLBEG00000027848	-	100	92.690	Labrus_bergylta
ENSELUG00000020917	upf1	100	92.844	ENSLBEG00000014862	upf1	100	93.447	Labrus_bergylta
ENSELUG00000020917	upf1	64	91.892	ENSLACG00000008482	UPF1	100	91.607	Latimeria_chalumnae
ENSELUG00000020917	upf1	100	93.135	ENSLOCG00000002072	upf1	100	93.767	Lepisosteus_oculatus
ENSELUG00000020917	upf1	100	89.868	ENSLAFG00000014963	UPF1	100	89.604	Loxodonta_africana
ENSELUG00000020917	upf1	100	90.434	ENSMFAG00000037748	UPF1	100	90.168	Macaca_fascicularis
ENSELUG00000020917	upf1	100	90.194	ENSMMUG00000023286	UPF1	100	89.929	Macaca_mulatta
ENSELUG00000020917	upf1	100	90.434	ENSMNEG00000000046	UPF1	100	90.168	Macaca_nemestrina
ENSELUG00000020917	upf1	95	91.777	ENSMLEG00000028404	UPF1	99	91.493	Mandrillus_leucophaeus
ENSELUG00000020917	upf1	100	93.369	ENSMAMG00000006229	upf1	100	94.086	Mastacembelus_armatus
ENSELUG00000020917	upf1	100	92.058	ENSMAMG00000006231	-	100	92.509	Mastacembelus_armatus
ENSELUG00000020917	upf1	100	93.874	ENSMZEG00005003489	upf1	100	94.505	Maylandia_zebra
ENSELUG00000020917	upf1	100	92.141	ENSMZEG00005016386	-	100	92.502	Maylandia_zebra
ENSELUG00000020917	upf1	95	91.596	ENSMGAG00000004745	UPF1	100	91.313	Meleagris_gallopavo
ENSELUG00000020917	upf1	95	91.493	ENSMAUG00000011398	Upf1	95	91.210	Mesocricetus_auratus
ENSELUG00000020917	upf1	100	90.594	ENSMICG00000001659	UPF1	100	90.328	Microcebus_murinus
ENSELUG00000020917	upf1	100	89.929	ENSMOCG00000005699	Upf1	100	89.753	Microtus_ochrogaster
ENSELUG00000020917	upf1	100	93.213	ENSMMOG00000007881	upf1	100	93.032	Mola_mola
ENSELUG00000020917	upf1	95	90.114	ENSMMOG00000007537	-	99	90.114	Mola_mola
ENSELUG00000020917	upf1	100	89.825	ENSMODG00000003689	UPF1	100	89.737	Monodelphis_domestica
ENSELUG00000020917	upf1	100	92.941	ENSMALG00000000144	upf1	100	93.303	Monopterus_albus
ENSELUG00000020917	upf1	100	91.457	ENSMALG00000018100	-	100	91.367	Monopterus_albus
ENSELUG00000020917	upf1	100	90.553	MGP_CAROLIEiJ_G0031142	Upf1	100	90.285	Mus_caroli
ENSELUG00000020917	upf1	100	90.553	ENSMUSG00000058301	Upf1	100	90.285	Mus_musculus
ENSELUG00000020917	upf1	100	90.553	MGP_PahariEiJ_G0021607	Upf1	100	90.285	Mus_pahari
ENSELUG00000020917	upf1	100	90.553	MGP_SPRETEiJ_G0032260	Upf1	100	90.285	Mus_spretus
ENSELUG00000020917	upf1	100	90.683	ENSMPUG00000015516	UPF1	100	90.417	Mustela_putorius_furo
ENSELUG00000020917	upf1	99	90.561	ENSMLUG00000012122	UPF1	99	90.294	Myotis_lucifugus
ENSELUG00000020917	upf1	100	89.604	ENSNGAG00000024107	Upf1	100	89.339	Nannospalax_galili
ENSELUG00000020917	upf1	100	88.763	ENSNBRG00000022069	-	100	91.602	Neolamprologus_brichardi
ENSELUG00000020917	upf1	100	91.848	ENSNBRG00000000670	upf1	100	92.148	Neolamprologus_brichardi
ENSELUG00000020917	upf1	95	86.011	ENSNLEG00000006062	UPF1	99	85.728	Nomascus_leucogenys
ENSELUG00000020917	upf1	83	85.106	ENSMEUG00000014146	-	83	84.526	Notamacropus_eugenii
ENSELUG00000020917	upf1	95	86.069	ENSOPRG00000014018	UPF1	99	85.782	Ochotona_princeps
ENSELUG00000020917	upf1	100	90.689	ENSODEG00000012426	UPF1	100	90.689	Octodon_degus
ENSELUG00000020917	upf1	100	93.874	ENSONIG00000010452	upf1	100	94.505	Oreochromis_niloticus
ENSELUG00000020917	upf1	100	92.141	ENSONIG00000012729	-	100	92.502	Oreochromis_niloticus
ENSELUG00000020917	upf1	100	90.212	ENSOANG00000004568	UPF1	100	90.035	Ornithorhynchus_anatinus
ENSELUG00000020917	upf1	100	92.329	ENSORLG00000008453	upf1	100	91.697	Oryzias_latipes
ENSELUG00000020917	upf1	100	92.245	ENSORLG00020014758	upf1	100	91.614	Oryzias_latipes_hni
ENSELUG00000020917	upf1	100	92.245	ENSORLG00015010165	upf1	100	91.614	Oryzias_latipes_hsok
ENSELUG00000020917	upf1	100	92.148	ENSOMEG00000003665	upf1	100	92.238	Oryzias_melastigma
ENSELUG00000020917	upf1	100	90.594	ENSOGAG00000012866	UPF1	100	90.328	Otolemur_garnettii
ENSELUG00000020917	upf1	96	89.113	ENSOARG00000010739	UPF1	100	88.655	Ovis_aries
ENSELUG00000020917	upf1	95	91.777	ENSPPAG00000043884	UPF1	96	91.493	Pan_paniscus
ENSELUG00000020917	upf1	100	89.886	ENSPPRG00000023470	UPF1	100	89.622	Panthera_pardus
ENSELUG00000020917	upf1	95	90.476	ENSPTIG00000010159	UPF1	99	90.190	Panthera_tigris_altaica
ENSELUG00000020917	upf1	100	90.434	ENSPTRG00000010721	UPF1	100	90.168	Pan_troglodytes
ENSELUG00000020917	upf1	100	90.434	ENSPANG00000008847	UPF1	100	90.168	Papio_anubis
ENSELUG00000020917	upf1	92	97.433	ENSPKIG00000006069	upf1	95	96.259	Paramormyrops_kingsleyae
ENSELUG00000020917	upf1	70	90.674	ENSPSIG00000009491	UPF1	100	90.285	Pelodiscus_sinensis
ENSELUG00000020917	upf1	100	91.418	ENSPMGG00000017327	upf1	100	92.412	Periophthalmus_magnuspinnatus
ENSELUG00000020917	upf1	100	89.929	ENSPEMG00000001085	Upf1	100	89.664	Peromyscus_maniculatus_bairdii
ENSELUG00000020917	upf1	100	87.163	ENSPMAG00000001206	upf1	100	86.984	Petromyzon_marinus
ENSELUG00000020917	upf1	100	91.030	ENSPCIG00000006156	UPF1	100	90.853	Phascolarctos_cinereus
ENSELUG00000020917	upf1	100	91.968	ENSPLAG00000016232	-	100	92.419	Poecilia_latipinna
ENSELUG00000020917	upf1	100	92.793	ENSPLAG00000018155	-	100	92.329	Poecilia_latipinna
ENSELUG00000020917	upf1	100	92.509	ENSPMEG00000011443	-	100	92.224	Poecilia_mexicana
ENSELUG00000020917	upf1	100	92.058	ENSPMEG00000016319	-	100	92.509	Poecilia_mexicana
ENSELUG00000020917	upf1	100	92.446	ENSPREG00000009940	upf1	100	92.162	Poecilia_reticulata
ENSELUG00000020917	upf1	100	91.877	ENSPREG00000011247	-	100	92.329	Poecilia_reticulata
ENSELUG00000020917	upf1	100	85.048	ENSPPYG00000009752	UPF1	100	84.697	Pongo_abelii
ENSELUG00000020917	upf1	75	97.980	ENSPCAG00000012962	UPF1	76	97.980	Procavia_capensis
ENSELUG00000020917	upf1	100	90.451	ENSPCOG00000023813	UPF1	100	90.186	Propithecus_coquereli
ENSELUG00000020917	upf1	69	93.416	ENSPVAG00000003183	UPF1	69	94.872	Pteropus_vampyrus
ENSELUG00000020917	upf1	100	92.141	ENSPNYG00000016731	-	100	92.502	Pundamilia_nyererei
ENSELUG00000020917	upf1	100	93.874	ENSPNYG00000003694	upf1	100	94.505	Pundamilia_nyererei
ENSELUG00000020917	upf1	100	93.484	ENSPNAG00000025614	upf1	100	94.480	Pygocentrus_nattereri
ENSELUG00000020917	upf1	100	90.553	ENSRNOG00000020134	Upf1	100	90.285	Rattus_norvegicus
ENSELUG00000020917	upf1	95	89.414	ENSRBIG00000013894	UPF1	98	91.857	Rhinopithecus_bieti
ENSELUG00000020917	upf1	95	91.777	ENSRROG00000040935	UPF1	98	91.857	Rhinopithecus_roxellana
ENSELUG00000020917	upf1	80	56.548	YMR080C	NAM7	84	56.548	Saccharomyces_cerevisiae
ENSELUG00000020917	upf1	95	91.769	ENSSBOG00000023632	UPF1	96	91.485	Saimiri_boliviensis_boliviensis
ENSELUG00000020917	upf1	95	91.981	ENSSHAG00000010499	UPF1	100	91.698	Sarcophilus_harrisii
ENSELUG00000020917	upf1	100	93.225	ENSSFOG00015021095	upf1	100	93.948	Scleropages_formosus
ENSELUG00000020917	upf1	100	92.419	ENSSMAG00000021018	-	100	92.870	Scophthalmus_maximus
ENSELUG00000020917	upf1	100	92.819	ENSSMAG00000005055	upf1	100	93.537	Scophthalmus_maximus
ENSELUG00000020917	upf1	100	92.329	ENSSDUG00000009629	-	100	92.780	Seriola_dumerili
ENSELUG00000020917	upf1	100	92.500	ENSSDUG00000013320	upf1	100	94.355	Seriola_dumerili
ENSELUG00000020917	upf1	100	92.329	ENSSLDG00000006878	-	100	92.780	Seriola_lalandi_dorsalis
ENSELUG00000020917	upf1	100	93.671	ENSSLDG00000020868	upf1	100	93.896	Seriola_lalandi_dorsalis
ENSELUG00000020917	upf1	100	91.495	ENSSPUG00000010538	UPF1	100	91.226	Sphenodon_punctatus
ENSELUG00000020917	upf1	100	92.058	ENSSPAG00000011521	-	100	92.509	Stegastes_partitus
ENSELUG00000020917	upf1	100	91.877	ENSSPAG00000000003	upf1	100	91.606	Stegastes_partitus
ENSELUG00000020917	upf1	100	90.925	ENSSSCG00000039301	UPF1	99	92.381	Sus_scrofa
ENSELUG00000020917	upf1	89	87.234	ENSTGUG00000001057	UPF1	100	91.272	Taeniopygia_guttata
ENSELUG00000020917	upf1	100	93.563	ENSTRUG00000000150	upf1	100	93.200	Takifugu_rubripes
ENSELUG00000020917	upf1	100	91.516	ENSTRUG00000005131	-	100	91.606	Takifugu_rubripes
ENSELUG00000020917	upf1	100	87.189	ENSTTRG00000011544	UPF1	100	86.922	Tursiops_truncatus
ENSELUG00000020917	upf1	100	90.594	ENSUAMG00000007093	UPF1	100	90.328	Ursus_americanus
ENSELUG00000020917	upf1	96	91.714	ENSUMAG00000006652	UPF1	99	92.490	Ursus_maritimus
ENSELUG00000020917	upf1	100	90.683	ENSVVUG00000007797	UPF1	100	90.417	Vulpes_vulpes
ENSELUG00000020917	upf1	100	77.972	ENSXETG00000013602	upf1	100	78.177	Xenopus_tropicalis
ENSELUG00000020917	upf1	97	92.142	ENSXCOG00000015275	-	96	91.667	Xiphophorus_couchianus
ENSELUG00000020917	upf1	94	92.967	ENSXCOG00000005764	-	99	93.064	Xiphophorus_couchianus
ENSELUG00000020917	upf1	100	92.308	ENSXMAG00000001703	-	100	91.848	Xiphophorus_maculatus
ENSELUG00000020917	upf1	100	92.148	ENSXMAG00000002540	-	100	92.690	Xiphophorus_maculatus