EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000021646 (Gene tree)
Gene ID: 105023489
Gene Symbol: srsf1a
Alias: sfrs1a|sfrs1l|wu:fb52g10|wu:fb97g12|zgc:66146
Full Name: serine/arginine-rich splicing factor 1B
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 6443 bases
Position: chrLG01:20172528-20178970
Accession: 105023489
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000022719	RRM_1	PF00076.22	5.5e-32	1	2
ENSELUP00000022719	RRM_1	PF00076.22	5.5e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000033741	-	1303	XM_010892766	ENSELUP00000022719	251 (aa)	XP_010891068	UPI000576D7D6

Gene Model

Click here to download ENSELUG00000021646's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03040	Spliceosome	KEGG
els05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000021646's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000021646	srsf1a	65	40.984	ENSELUG00000017551	srsf4	93	41.176
ENSELUG00000021646	srsf1a	78	92.079	ENSELUG00000018267	pigs	79	94.059
ENSELUG00000021646	srsf1a	64	45.143	ENSELUG00000013506	SRSF6	62	47.297
ENSELUG00000021646	srsf1a	65	39.785	ENSELUG00000020439	srsf5a	57	44.022
ENSELUG00000021646	srsf1a	71	65.946	ENSELUG00000012644	SRSF9	72	64.324
ENSELUG00000021646	srsf1a	71	68.333	ENSELUG00000021669	srsf9	72	67.778
ENSELUG00000021646	srsf1a	63	45.251	ENSELUG00000019852	srsf5b	83	42.466
ENSELUG00000021646	srsf1a	88	38.431	ENSELUG00000024182	SRSF6	87	41.176

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000021646	srsf1a	98	79.839	ENSG00000136450	SRSF1	95	95.161	Homo_sapiens
ENSELUG00000021646	srsf1a	77	87.047	ENSAPOG00000008542	-	80	87.000	Acanthochromis_polyacanthus
ENSELUG00000021646	srsf1a	76	93.229	ENSAPOG00000002748	-	78	92.708	Acanthochromis_polyacanthus
ENSELUG00000021646	srsf1a	77	89.637	ENSAMEG00000002635	SRSF1	78	90.155	Ailuropoda_melanoleuca
ENSELUG00000021646	srsf1a	76	93.229	ENSACIG00000008091	srsf1a	83	93.229	Amphilophus_citrinellus
ENSELUG00000021646	srsf1a	77	86.500	ENSAOCG00000000337	-	81	87.000	Amphiprion_ocellaris
ENSELUG00000021646	srsf1a	76	93.750	ENSAOCG00000010671	-	83	93.229	Amphiprion_ocellaris
ENSELUG00000021646	srsf1a	77	86.500	ENSAPEG00000023352	-	79	87.000	Amphiprion_percula
ENSELUG00000021646	srsf1a	76	93.750	ENSAPEG00000009915	-	83	93.229	Amphiprion_percula
ENSELUG00000021646	srsf1a	78	88.265	ENSATEG00000021567	-	81	87.755	Anabas_testudineus
ENSELUG00000021646	srsf1a	76	93.750	ENSATEG00000022403	-	77	93.229	Anabas_testudineus
ENSELUG00000021646	srsf1a	77	90.722	ENSACAG00000005542	-	78	94.330	Anolis_carolinensis
ENSELUG00000021646	srsf1a	98	79.839	ENSANAG00000020583	-	95	92.754	Aotus_nancymaae
ENSELUG00000021646	srsf1a	78	67.857	ENSANAG00000025417	-	73	67.358	Aotus_nancymaae
ENSELUG00000021646	srsf1a	78	89.552	ENSAMXG00000035996	srsf1a	80	91.045	Astyanax_mexicanus
ENSELUG00000021646	srsf1a	53	81.935	ENSAMXG00000024373	-	72	81.935	Astyanax_mexicanus
ENSELUG00000021646	srsf1a	98	79.839	ENSBTAG00000014766	SRSF1	78	93.299	Bos_taurus
ENSELUG00000021646	srsf1a	77	82.990	ENSCJAG00000008111	-	86	85.567	Callithrix_jacchus
ENSELUG00000021646	srsf1a	98	79.839	ENSCJAG00000041713	-	95	92.754	Callithrix_jacchus
ENSELUG00000021646	srsf1a	98	79.839	ENSCAFG00000017430	SRSF1	77	93.299	Canis_familiaris
ENSELUG00000021646	srsf1a	98	79.839	ENSCAFG00020025632	-	77	93.299	Canis_lupus_dingo
ENSELUG00000021646	srsf1a	77	89.691	ENSCHIG00000010787	SRSF1	78	93.299	Capra_hircus
ENSELUG00000021646	srsf1a	98	79.839	ENSTSYG00000013899	-	95	92.754	Carlito_syrichta
ENSELUG00000021646	srsf1a	98	79.839	ENSCPOG00000032681	-	78	93.299	Cavia_porcellus
ENSELUG00000021646	srsf1a	98	79.839	ENSCCAG00000029484	-	95	92.754	Cebus_capucinus
ENSELUG00000021646	srsf1a	98	79.839	ENSCATG00000042294	-	95	92.754	Cercocebus_atys
ENSELUG00000021646	srsf1a	98	79.839	ENSCLAG00000014707	-	78	93.299	Chinchilla_lanigera
ENSELUG00000021646	srsf1a	99	78.715	ENSCSAG00000005642	-	77	92.268	Chlorocebus_sabaeus
ENSELUG00000021646	srsf1a	77	89.691	ENSCHOG00000001899	SRSF1	78	93.299	Choloepus_hoffmanni
ENSELUG00000021646	srsf1a	98	81.048	ENSCPBG00000009851	-	78	94.845	Chrysemys_picta_bellii
ENSELUG00000021646	srsf1a	98	79.839	ENSCANG00000029726	-	95	92.754	Colobus_angolensis_palliatus
ENSELUG00000021646	srsf1a	98	79.839	ENSCGRG00001000670	Srsf1	77	93.299	Cricetulus_griseus_chok1gshd
ENSELUG00000021646	srsf1a	98	79.839	ENSCGRG00000005590	Srsf1	78	93.299	Cricetulus_griseus_crigri
ENSELUG00000021646	srsf1a	100	86.454	ENSCSEG00000014272	-	100	86.454	Cynoglossus_semilaevis
ENSELUG00000021646	srsf1a	76	80.861	ENSCSEG00000009973	-	80	81.340	Cynoglossus_semilaevis
ENSELUG00000021646	srsf1a	76	93.750	ENSCVAG00000018617	-	78	93.229	Cyprinodon_variegatus
ENSELUG00000021646	srsf1a	77	87.817	ENSCVAG00000005458	-	92	88.108	Cyprinodon_variegatus
ENSELUG00000021646	srsf1a	78	92.857	ENSDARG00000017843	srsf1b	80	95.918	Danio_rerio
ENSELUG00000021646	srsf1a	78	87.864	ENSDARG00000057691	srsf1a	100	89.119	Danio_rerio
ENSELUG00000021646	srsf1a	98	79.839	ENSDNOG00000011737	-	77	93.299	Dasypus_novemcinctus
ENSELUG00000021646	srsf1a	98	79.839	ENSDORG00000015082	Srsf1	78	93.299	Dipodomys_ordii
ENSELUG00000021646	srsf1a	72	88.950	ENSETEG00000005349	-	62	90.608	Echinops_telfairi
ENSELUG00000021646	srsf1a	98	79.839	ENSEASG00005002922	-	77	93.299	Equus_asinus_asinus
ENSELUG00000021646	srsf1a	77	89.691	ENSECAG00000016654	SRSF1	78	93.299	Equus_caballus
ENSELUG00000021646	srsf1a	72	90.055	ENSEEUG00000009255	-	62	91.713	Erinaceus_europaeus
ENSELUG00000021646	srsf1a	98	79.839	ENSFCAG00000002250	-	91	91.209	Felis_catus
ENSELUG00000021646	srsf1a	76	96.296	ENSFALG00000005062	-	77	75.258	Ficedula_albicollis
ENSELUG00000021646	srsf1a	98	79.839	ENSFDAG00000010646	-	78	93.299	Fukomys_damarensis
ENSELUG00000021646	srsf1a	76	93.750	ENSFHEG00000003174	srsf1a	83	93.229	Fundulus_heteroclitus
ENSELUG00000021646	srsf1a	78	89.340	ENSGMOG00000014787	-	80	89.062	Gadus_morhua
ENSELUG00000021646	srsf1a	77	91.237	ENSGALG00000005525	SRSF1	78	94.845	Gallus_gallus
ENSELUG00000021646	srsf1a	77	86.010	ENSGACG00000020621	srsf1b	78	86.010	Gasterosteus_aculeatus
ENSELUG00000021646	srsf1a	98	81.048	ENSGAGG00000022965	-	77	94.845	Gopherus_agassizii
ENSELUG00000021646	srsf1a	98	79.839	ENSGGOG00000004386	SRSF1	95	92.754	Gorilla_gorilla
ENSELUG00000021646	srsf1a	99	93.574	ENSHBUG00000016788	srsf1a	99	93.574	Haplochromis_burtoni
ENSELUG00000021646	srsf1a	65	89.024	ENSHGLG00000000600	-	76	93.293	Heterocephalus_glaber_female
ENSELUG00000021646	srsf1a	65	89.024	ENSHGLG00000000669	-	76	93.293	Heterocephalus_glaber_female
ENSELUG00000021646	srsf1a	98	79.839	ENSHGLG00100016906	-	78	93.299	Heterocephalus_glaber_male
ENSELUG00000021646	srsf1a	78	86.000	ENSHCOG00000018918	srsf1a	78	89.000	Hippocampus_comes
ENSELUG00000021646	srsf1a	77	96.392	ENSIPUG00000008750	srsf1b	79	96.392	Ictalurus_punctatus
ENSELUG00000021646	srsf1a	76	89.447	ENSIPUG00000017039	srsf1a	79	91.457	Ictalurus_punctatus
ENSELUG00000021646	srsf1a	98	79.839	ENSSTOG00000000243	-	91	91.209	Ictidomys_tridecemlineatus
ENSELUG00000021646	srsf1a	98	79.839	ENSJJAG00000000102	-	78	93.299	Jaculus_jaculus
ENSELUG00000021646	srsf1a	76	94.271	ENSKMAG00000019232	srsf1a	78	94.271	Kryptolebias_marmoratus
ENSELUG00000021646	srsf1a	77	83.249	ENSLBEG00000015294	-	79	84.264	Labrus_bergylta
ENSELUG00000021646	srsf1a	99	94.378	ENSLBEG00000020864	-	99	94.378	Labrus_bergylta
ENSELUG00000021646	srsf1a	77	91.753	ENSLACG00000014160	srsf1a	73	92.228	Latimeria_chalumnae
ENSELUG00000021646	srsf1a	77	95.855	ENSLOCG00000005994	srsf1a	78	95.855	Lepisosteus_oculatus
ENSELUG00000021646	srsf1a	77	89.691	ENSLAFG00000025743	SRSF1	78	93.299	Loxodonta_africana
ENSELUG00000021646	srsf1a	98	79.839	ENSMFAG00000040003	-	95	92.754	Macaca_fascicularis
ENSELUG00000021646	srsf1a	98	79.839	ENSMMUG00000004725	SRSF1	95	92.754	Macaca_mulatta
ENSELUG00000021646	srsf1a	99	77.108	ENSMMUG00000003260	-	93	88.601	Macaca_mulatta
ENSELUG00000021646	srsf1a	99	77.510	ENSMNEG00000015983	-	77	91.237	Macaca_nemestrina
ENSELUG00000021646	srsf1a	98	79.839	ENSMNEG00000027680	-	95	92.754	Macaca_nemestrina
ENSELUG00000021646	srsf1a	99	77.823	ENSMLEG00000015243	-	76	88.601	Mandrillus_leucophaeus
ENSELUG00000021646	srsf1a	77	89.691	ENSMLEG00000040509	SRSF1	78	93.299	Mandrillus_leucophaeus
ENSELUG00000021646	srsf1a	77	88.601	ENSMAMG00000019687	-	78	88.083	Mastacembelus_armatus
ENSELUG00000021646	srsf1a	76	93.750	ENSMAMG00000018454	-	78	93.229	Mastacembelus_armatus
ENSELUG00000021646	srsf1a	77	92.746	ENSMAMG00000019691	-	80	92.746	Mastacembelus_armatus
ENSELUG00000021646	srsf1a	98	79.839	ENSMAUG00000021845	Srsf1	78	93.299	Mesocricetus_auratus
ENSELUG00000021646	srsf1a	98	79.839	ENSMICG00000013639	-	95	92.754	Microcebus_murinus
ENSELUG00000021646	srsf1a	98	79.839	ENSMOCG00000001996	Srsf1	78	93.299	Microtus_ochrogaster
ENSELUG00000021646	srsf1a	76	94.792	ENSMMOG00000014354	srsf1a	83	94.271	Mola_mola
ENSELUG00000021646	srsf1a	72	91.209	ENSMODG00000014781	-	62	92.308	Monodelphis_domestica
ENSELUG00000021646	srsf1a	80	77.000	ENSMALG00000007763	-	78	81.347	Monopterus_albus
ENSELUG00000021646	srsf1a	76	93.750	ENSMALG00000017129	-	75	92.708	Monopterus_albus
ENSELUG00000021646	srsf1a	98	79.839	MGP_CAROLIEiJ_G0016943	Srsf1	91	91.209	Mus_caroli
ENSELUG00000021646	srsf1a	98	79.839	ENSMUSG00000018379	Srsf1	91	91.209	Mus_musculus
ENSELUG00000021646	srsf1a	98	79.839	MGP_PahariEiJ_G0018074	Srsf1	78	93.299	Mus_pahari
ENSELUG00000021646	srsf1a	98	79.839	MGP_SPRETEiJ_G0017790	Srsf1	91	91.209	Mus_spretus
ENSELUG00000021646	srsf1a	77	89.691	ENSMPUG00000015369	SRSF1	78	93.299	Mustela_putorius_furo
ENSELUG00000021646	srsf1a	77	89.691	ENSMLUG00000011040	SRSF1	78	93.299	Myotis_lucifugus
ENSELUG00000021646	srsf1a	79	83.417	ENSMLUG00000023995	-	78	86.010	Myotis_lucifugus
ENSELUG00000021646	srsf1a	77	89.691	ENSNGAG00000011395	Srsf1	78	93.299	Nannospalax_galili
ENSELUG00000021646	srsf1a	99	71.486	ENSNBRG00000008041	srsf1b	78	82.383	Neolamprologus_brichardi
ENSELUG00000021646	srsf1a	98	79.839	ENSNLEG00000008088	-	95	92.754	Nomascus_leucogenys
ENSELUG00000021646	srsf1a	52	87.121	ENSOPRG00000001234	-	72	92.424	Ochotona_princeps
ENSELUG00000021646	srsf1a	98	79.839	ENSODEG00000011481	-	78	93.299	Octodon_degus
ENSELUG00000021646	srsf1a	78	92.857	ENSONIG00000004860	-	79	92.746	Oreochromis_niloticus
ENSELUG00000021646	srsf1a	99	93.574	ENSONIG00000013160	-	98	93.574	Oreochromis_niloticus
ENSELUG00000021646	srsf1a	99	65.323	ENSOCUG00000010894	-	75	71.053	Oryctolagus_cuniculus
ENSELUG00000021646	srsf1a	76	93.750	ENSORLG00000004580	srsf1a	78	93.229	Oryzias_latipes
ENSELUG00000021646	srsf1a	76	93.750	ENSORLG00020009456	srsf1a	83	93.229	Oryzias_latipes_hni
ENSELUG00000021646	srsf1a	76	93.750	ENSORLG00015014384	srsf1a	83	93.229	Oryzias_latipes_hsok
ENSELUG00000021646	srsf1a	70	91.429	ENSOMEG00000004106	srsf1a	71	90.857	Oryzias_melastigma
ENSELUG00000021646	srsf1a	81	90.244	ENSOGAG00000025950	-	78	93.299	Otolemur_garnettii
ENSELUG00000021646	srsf1a	77	89.119	ENSOARG00000008323	SRSF1	77	89.119	Ovis_aries
ENSELUG00000021646	srsf1a	98	79.839	ENSPPAG00000043403	-	95	92.754	Pan_paniscus
ENSELUG00000021646	srsf1a	98	79.839	ENSPPRG00000004238	-	91	91.209	Panthera_pardus
ENSELUG00000021646	srsf1a	98	79.839	ENSPTRG00000049077	SRSF1	95	92.754	Pan_troglodytes
ENSELUG00000021646	srsf1a	99	62.000	ENSPANG00000030275	-	75	67.692	Papio_anubis
ENSELUG00000021646	srsf1a	98	79.839	ENSPANG00000022305	-	95	92.754	Papio_anubis
ENSELUG00000021646	srsf1a	77	96.373	ENSPKIG00000012857	srsf1b	79	96.373	Paramormyrops_kingsleyae
ENSELUG00000021646	srsf1a	78	93.846	ENSPKIG00000007204	srsf1a	84	94.872	Paramormyrops_kingsleyae
ENSELUG00000021646	srsf1a	77	84.021	ENSPSIG00000009000	-	72	94.737	Pelodiscus_sinensis
ENSELUG00000021646	srsf1a	95	77.824	ENSPMGG00000005467	-	78	86.458	Periophthalmus_magnuspinnatus
ENSELUG00000021646	srsf1a	76	91.146	ENSPMGG00000013112	-	82	90.104	Periophthalmus_magnuspinnatus
ENSELUG00000021646	srsf1a	98	79.839	ENSPEMG00000021416	Srsf1	78	93.299	Peromyscus_maniculatus_bairdii
ENSELUG00000021646	srsf1a	77	90.256	ENSPCIG00000006076	-	78	93.333	Phascolarctos_cinereus
ENSELUG00000021646	srsf1a	79	88.000	ENSPFOG00000018325	-	70	88.265	Poecilia_formosa
ENSELUG00000021646	srsf1a	79	88.000	ENSPLAG00000008416	srsf1b	80	88.265	Poecilia_latipinna
ENSELUG00000021646	srsf1a	79	88.000	ENSPMEG00000002388	-	80	88.265	Poecilia_mexicana
ENSELUG00000021646	srsf1a	76	93.750	ENSPREG00000009667	srsf1a	78	93.229	Poecilia_reticulata
ENSELUG00000021646	srsf1a	98	79.839	ENSPPYG00000008240	SRSF1	78	93.299	Pongo_abelii
ENSELUG00000021646	srsf1a	77	89.691	ENSPCAG00000005199	SRSF1	78	93.299	Procavia_capensis
ENSELUG00000021646	srsf1a	78	74.372	ENSPCOG00000025736	-	93	73.980	Propithecus_coquereli
ENSELUG00000021646	srsf1a	98	79.839	ENSPCOG00000023654	-	95	92.754	Propithecus_coquereli
ENSELUG00000021646	srsf1a	53	95.714	ENSPVAG00000000519	-	53	95.714	Pteropus_vampyrus
ENSELUG00000021646	srsf1a	78	93.333	ENSPNAG00000022241	srsf1a	79	93.846	Pygocentrus_nattereri
ENSELUG00000021646	srsf1a	77	93.264	ENSPNAG00000014601	srsf1b	78	93.264	Pygocentrus_nattereri
ENSELUG00000021646	srsf1a	77	89.691	ENSRNOG00000050323	Srsf1	78	93.299	Rattus_norvegicus
ENSELUG00000021646	srsf1a	98	79.839	ENSRBIG00000034445	-	95	92.754	Rhinopithecus_bieti
ENSELUG00000021646	srsf1a	98	79.839	ENSRROG00000041506	-	95	92.754	Rhinopithecus_roxellana
ENSELUG00000021646	srsf1a	98	79.839	ENSSBOG00000025377	-	95	92.754	Saimiri_boliviensis_boliviensis
ENSELUG00000021646	srsf1a	77	90.256	ENSSHAG00000002552	-	78	93.333	Sarcophilus_harrisii
ENSELUG00000021646	srsf1a	77	95.337	ENSSFOG00015004800	srsf1a	78	94.819	Scleropages_formosus
ENSELUG00000021646	srsf1a	77	86.070	ENSSMAG00000009719	-	79	86.567	Scophthalmus_maximus
ENSELUG00000021646	srsf1a	76	94.271	ENSSMAG00000007018	-	78	93.750	Scophthalmus_maximus
ENSELUG00000021646	srsf1a	99	94.378	ENSSDUG00000011303	-	99	94.378	Seriola_dumerili
ENSELUG00000021646	srsf1a	98	72.112	ENSSDUG00000003929	-	82	82.234	Seriola_dumerili
ENSELUG00000021646	srsf1a	77	78.351	ENSSLDG00000016868	-	77	77.320	Seriola_lalandi_dorsalis
ENSELUG00000021646	srsf1a	73	84.153	ENSSLDG00000016895	-	79	83.957	Seriola_lalandi_dorsalis
ENSELUG00000021646	srsf1a	99	94.378	ENSSLDG00000010543	-	99	94.378	Seriola_lalandi_dorsalis
ENSELUG00000021646	srsf1a	72	90.055	ENSSARG00000010949	-	62	91.713	Sorex_araneus
ENSELUG00000021646	srsf1a	98	81.048	ENSSPUG00000000804	-	92	92.857	Sphenodon_punctatus
ENSELUG00000021646	srsf1a	78	84.211	ENSSPAG00000014152	-	81	84.689	Stegastes_partitus
ENSELUG00000021646	srsf1a	76	93.750	ENSSPAG00000022562	-	78	93.750	Stegastes_partitus
ENSELUG00000021646	srsf1a	98	79.839	ENSSSCG00000017626	-	78	93.299	Sus_scrofa
ENSELUG00000021646	srsf1a	53	89.474	ENSTGUG00000008416	-	72	94.737	Taeniopygia_guttata
ENSELUG00000021646	srsf1a	76	93.229	ENSTRUG00000003691	srsf1a	78	92.708	Takifugu_rubripes
ENSELUG00000021646	srsf1a	76	93.229	ENSTNIG00000016223	srsf1a	77	92.708	Tetraodon_nigroviridis
ENSELUG00000021646	srsf1a	72	87.845	ENSTBEG00000015378	-	62	91.160	Tupaia_belangeri
ENSELUG00000021646	srsf1a	52	87.121	ENSTTRG00000007310	SRSF1	72	92.424	Tursiops_truncatus
ENSELUG00000021646	srsf1a	77	89.691	ENSUAMG00000009858	SRSF1	78	93.299	Ursus_americanus
ENSELUG00000021646	srsf1a	98	79.839	ENSUMAG00000000455	-	77	93.299	Ursus_maritimus
ENSELUG00000021646	srsf1a	77	89.175	ENSVPAG00000010094	SRSF1	78	92.784	Vicugna_pacos
ENSELUG00000021646	srsf1a	98	79.839	ENSVVUG00000011882	-	77	93.299	Vulpes_vulpes
ENSELUG00000021646	srsf1a	77	88.601	ENSXETG00000008954	srsf1	80	85.446	Xenopus_tropicalis
ENSELUG00000021646	srsf1a	76	93.750	ENSXMAG00000011766	srsf1a	78	93.229	Xiphophorus_maculatus