EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000022123 (Gene tree)
Gene ID: 105028245
Gene Symbol: npm1b
Alias: npm4
Full Name: nucleophosmin
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 27948 bases
Position: chrLG04:6062201-6090148
Accession: 105028245
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000023241	Nucleoplasmin	PF03066.15	3.1e-37	1	1
ENSELUP00000041303	Nucleoplasmin	PF03066.15	3.6e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000042597	-	507	-	ENSELUP00000041303	168 (aa)	-	-
ENSELUT00000034374	-	5497	XM_010900845	ENSELUP00000023241	306 (aa)	XP_010899147	-

Gene Model

Click here to download ENSELUG00000022123's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000022123's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000022123	npm1b	95	39.262	ENSELUG00000013705	npm1a	97	39.735
ENSELUG00000022123	npm1b	65	42.342	ENSELUG00000021730	npm3	76	41.463
ENSELUG00000022123	npm1b	60	41.748	ENSELUG00000017306	-	84	41.228
ENSELUG00000022123	npm1b	63	42.991	ENSELUG00000004822	npm2b	80	40.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000022123	npm1b	99	64.379	ENSAPOG00000004268	npm1b	99	64.052	Acanthochromis_polyacanthus
ENSELUG00000022123	npm1b	61	79.412	ENSACIG00000019100	npm1b	64	77.064	Amphilophus_citrinellus
ENSELUG00000022123	npm1b	99	64.052	ENSAOCG00000012549	npm1b	99	64.052	Amphiprion_ocellaris
ENSELUG00000022123	npm1b	99	62.745	ENSAPEG00000000868	npm1b	99	63.072	Amphiprion_percula
ENSELUG00000022123	npm1b	99	64.803	ENSATEG00000006254	npm1b	99	64.803	Anabas_testudineus
ENSELUG00000022123	npm1b	95	40.940	ENSACAG00000015626	-	96	42.424	Anolis_carolinensis
ENSELUG00000022123	npm1b	71	78.992	ENSACLG00000013812	npm1b	67	79.720	Astatotilapia_calliptera
ENSELUG00000022123	npm1b	98	64.217	ENSAMXG00000042148	npm1b	99	64.537	Astyanax_mexicanus
ENSELUG00000022123	npm1b	95	41.414	ENSCPBG00000021221	-	58	42.761	Chrysemys_picta_bellii
ENSELUG00000022123	npm1b	64	43.925	ENSCPBG00000027172	-	68	41.860	Chrysemys_picta_bellii
ENSELUG00000022123	npm1b	99	60.784	ENSCSEG00000004530	npm1b	99	60.784	Cynoglossus_semilaevis
ENSELUG00000022123	npm1b	99	62.829	ENSCVAG00000013016	npm1b	99	62.829	Cyprinodon_variegatus
ENSELUG00000022123	npm1b	98	64.286	ENSDARG00000037675	npm1b	99	62.987	Danio_rerio
ENSELUG00000022123	npm1b	94	40.068	ENSFALG00000003320	-	94	41.096	Ficedula_albicollis
ENSELUG00000022123	npm1b	99	61.438	ENSFHEG00000020794	npm1b	99	61.438	Fundulus_heteroclitus
ENSELUG00000022123	npm1b	98	58.416	ENSGMOG00000002689	npm1b	99	60.066	Gadus_morhua
ENSELUG00000022123	npm1b	95	41.554	ENSGALG00000002197	-	69	43.581	Gallus_gallus
ENSELUG00000022123	npm1b	99	60.526	ENSGAFG00000017709	npm1b	99	60.526	Gambusia_affinis
ENSELUG00000022123	npm1b	98	66.555	ENSGACG00000016706	npm1b	99	65.217	Gasterosteus_aculeatus
ENSELUG00000022123	npm1b	95	41.275	ENSGAGG00000020250	-	96	42.761	Gopherus_agassizii
ENSELUG00000022123	npm1b	99	65.359	ENSHBUG00000019903	npm1b	95	65.359	Haplochromis_burtoni
ENSELUG00000022123	npm1b	98	57.756	ENSHCOG00000003895	npm1b	99	58.086	Hippocampus_comes
ENSELUG00000022123	npm1b	98	62.258	ENSIPUG00000020165	npm1b	99	62.903	Ictalurus_punctatus
ENSELUG00000022123	npm1b	98	61.204	ENSKMAG00000008260	npm1b	99	63.880	Kryptolebias_marmoratus
ENSELUG00000022123	npm1b	71	78.992	ENSLBEG00000001304	-	74	81.333	Labrus_bergylta
ENSELUG00000022123	npm1b	92	39.228	ENSLACG00000001779	-	100	41.275	Latimeria_chalumnae
ENSELUG00000022123	npm1b	93	51.163	ENSLOCG00000001942	npm1b	100	51.495	Lepisosteus_oculatus
ENSELUG00000022123	npm1b	72	58.667	ENSMAMG00000015335	npm1b	100	59.556	Mastacembelus_armatus
ENSELUG00000022123	npm1b	93	41.869	ENSMGAG00000001591	-	100	42.907	Meleagris_gallopavo
ENSELUG00000022123	npm1b	66	72.973	ENSMMOG00000003778	npm1b	94	72.143	Mola_mola
ENSELUG00000022123	npm1b	81	59.274	ENSMALG00000015383	npm1b	99	62.097	Monopterus_albus
ENSELUG00000022123	npm1b	71	78.992	ENSNBRG00000014133	npm1b	78	80.420	Neolamprologus_brichardi
ENSELUG00000022123	npm1b	98	61.462	ENSONIG00000001397	npm1b	98	60.784	Oreochromis_niloticus
ENSELUG00000022123	npm1b	96	53.667	ENSOMEG00000003414	npm1b	96	52.982	Oryzias_melastigma
ENSELUG00000022123	npm1b	100	59.306	ENSPKIG00000020050	npm1b	100	59.937	Paramormyrops_kingsleyae
ENSELUG00000022123	npm1b	95	41.472	ENSPSIG00000011204	-	92	41.892	Pelodiscus_sinensis
ENSELUG00000022123	npm1b	76	59.055	ENSPMGG00000008275	npm1b	96	66.197	Periophthalmus_magnuspinnatus
ENSELUG00000022123	npm1b	88	35.018	ENSPMAG00000004930	npm1b	99	34.694	Petromyzon_marinus
ENSELUG00000022123	npm1b	99	62.829	ENSPFOG00000018357	npm1b	99	62.829	Poecilia_formosa
ENSELUG00000022123	npm1b	65	66.102	ENSPREG00000006780	npm1b	85	66.102	Poecilia_reticulata
ENSELUG00000022123	npm1b	71	78.992	ENSPNYG00000001427	npm1b	67	79.720	Pundamilia_nyererei
ENSELUG00000022123	npm1b	98	67.763	ENSPNAG00000005498	npm1b	99	67.647	Pygocentrus_nattereri
ENSELUG00000022123	npm1b	97	58.667	ENSSFOG00015005064	npm1b	98	58.667	Scleropages_formosus
ENSELUG00000022123	npm1b	99	60.968	ENSSMAG00000008088	npm1b	99	60.968	Scophthalmus_maximus
ENSELUG00000022123	npm1b	99	65.132	ENSSDUG00000007726	npm1b	99	65.132	Seriola_dumerili
ENSELUG00000022123	npm1b	99	65.132	ENSSLDG00000021396	npm1b	99	65.461	Seriola_lalandi_dorsalis
ENSELUG00000022123	npm1b	65	45.872	ENSSPUG00000015604	-	70	43.750	Sphenodon_punctatus
ENSELUG00000022123	npm1b	65	56.881	ENSSPUG00000017271	-	78	47.134	Sphenodon_punctatus
ENSELUG00000022123	npm1b	99	63.725	ENSSPAG00000011152	npm1b	99	63.725	Stegastes_partitus
ENSELUG00000022123	npm1b	93	40.476	ENSTGUG00000014970	-	100	40.614	Taeniopygia_guttata
ENSELUG00000022123	npm1b	99	59.804	ENSTRUG00000008105	npm1b	95	60.784	Takifugu_rubripes
ENSELUG00000022123	npm1b	99	58.361	ENSTNIG00000013057	npm1b	99	58.553	Tetraodon_nigroviridis
ENSELUG00000022123	npm1b	95	42.761	ENSXETG00000008403	npm1	94	43.434	Xenopus_tropicalis
ENSELUG00000022123	npm1b	99	62.171	ENSXMAG00000001986	npm1b	99	62.171	Xiphophorus_maculatus