EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000022403 (Gene tree)
Gene ID: 105019141
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 25948 bases
Position: chrLG20:20952056-20978003
Accession: 105019141
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000023586	RRM_1	PF00076.22	8.3e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000035056	-	4020	XM_010885081	ENSELUP00000023586	416 (aa)	XP_010883383	UPI000661D455

Gene Model

Click here to download ENSELUG00000022403's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000022403's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000022403	rbm42	100	73.239	ENSAPOG00000015109	rbm42	100	73.176	Acanthochromis_polyacanthus
ENSELUG00000022403	rbm42	100	68.957	ENSACIG00000010771	rbm42	100	68.171	Amphilophus_citrinellus
ENSELUG00000022403	rbm42	100	73.349	ENSAOCG00000008873	rbm42	100	73.286	Amphiprion_ocellaris
ENSELUG00000022403	rbm42	100	73.349	ENSAPEG00000012051	rbm42	99	73.286	Amphiprion_percula
ENSELUG00000022403	rbm42	100	69.953	ENSATEG00000000536	rbm42	100	71.028	Anabas_testudineus
ENSELUG00000022403	rbm42	100	71.631	ENSACLG00000004988	rbm42	100	72.300	Astatotilapia_calliptera
ENSELUG00000022403	rbm42	100	80.760	ENSAMXG00000016545	rbm42	100	83.135	Astyanax_mexicanus
ENSELUG00000022403	rbm42	97	65.046	ENSCSEG00000010248	rbm42	100	69.807	Cynoglossus_semilaevis
ENSELUG00000022403	rbm42	100	69.031	ENSCVAG00000015589	rbm42	100	68.160	Cyprinodon_variegatus
ENSELUG00000022403	rbm42	100	74.641	ENSDARG00000039910	rbm42	100	75.837	Danio_rerio
ENSELUG00000022403	rbm42	53	80.973	ENSFHEG00000006764	rbm42	83	74.902	Fundulus_heteroclitus
ENSELUG00000022403	rbm42	100	70.047	ENSGMOG00000012660	rbm42	100	71.127	Gadus_morhua
ENSELUG00000022403	rbm42	76	68.421	ENSGAFG00000009059	rbm42	100	68.421	Gambusia_affinis
ENSELUG00000022403	rbm42	100	68.765	ENSGACG00000004170	rbm42	100	70.118	Gasterosteus_aculeatus
ENSELUG00000022403	rbm42	100	72.577	ENSHBUG00000011141	rbm42	100	72.300	Haplochromis_burtoni
ENSELUG00000022403	rbm42	100	66.979	ENSHCOG00000021214	rbm42	100	65.493	Hippocampus_comes
ENSELUG00000022403	rbm42	100	79.048	ENSIPUG00000022365	rbm42	99	79.524	Ictalurus_punctatus
ENSELUG00000022403	rbm42	91	67.442	ENSKMAG00000015287	rbm42	99	65.803	Kryptolebias_marmoratus
ENSELUG00000022403	rbm42	85	66.398	ENSLBEG00000004578	-	96	71.154	Labrus_bergylta
ENSELUG00000022403	rbm42	100	68.578	ENSLBEG00000017547	rbm42	100	72.664	Labrus_bergylta
ENSELUG00000022403	rbm42	100	69.977	ENSLOCG00000003368	rbm42	100	71.824	Lepisosteus_oculatus
ENSELUG00000022403	rbm42	100	70.686	ENSMAMG00000006708	rbm42	100	71.596	Mastacembelus_armatus
ENSELUG00000022403	rbm42	100	71.631	ENSMZEG00005025234	rbm42	100	72.300	Maylandia_zebra
ENSELUG00000022403	rbm42	100	61.358	ENSMALG00000015720	rbm42	100	69.409	Monopterus_albus
ENSELUG00000022403	rbm42	100	70.991	ENSONIG00000008029	rbm42	100	72.471	Oreochromis_niloticus
ENSELUG00000022403	rbm42	100	57.241	ENSORLG00020022507	rbm42	100	57.078	Oryzias_latipes_hni
ENSELUG00000022403	rbm42	100	68.706	ENSORLG00015000659	rbm42	100	68.384	Oryzias_latipes_hsok
ENSELUG00000022403	rbm42	56	79.237	ENSOMEG00000014332	rbm42	87	79.237	Oryzias_melastigma
ENSELUG00000022403	rbm42	100	80.096	ENSPKIG00000015165	rbm42	100	80.096	Paramormyrops_kingsleyae
ENSELUG00000022403	rbm42	73	81.053	ENSPMGG00000003569	rbm42	100	97.143	Periophthalmus_magnuspinnatus
ENSELUG00000022403	rbm42	52	55.804	ENSPMAG00000008633	rbm42	100	47.959	Petromyzon_marinus
ENSELUG00000022403	rbm42	100	68.884	ENSPFOG00000007701	rbm42	100	68.794	Poecilia_formosa
ENSELUG00000022403	rbm42	100	68.884	ENSPLAG00000009405	rbm42	100	68.794	Poecilia_latipinna
ENSELUG00000022403	rbm42	100	68.646	ENSPMEG00000010375	rbm42	100	68.558	Poecilia_mexicana
ENSELUG00000022403	rbm42	100	68.884	ENSPREG00000018102	rbm42	100	68.794	Poecilia_reticulata
ENSELUG00000022403	rbm42	100	72.275	ENSPNYG00000014460	rbm42	100	72.235	Pundamilia_nyererei
ENSELUG00000022403	rbm42	100	79.953	ENSPNAG00000009961	rbm42	100	80.896	Pygocentrus_nattereri
ENSELUG00000022403	rbm42	100	76.389	ENSSFOG00015019227	rbm42	100	76.581	Scleropages_formosus
ENSELUG00000022403	rbm42	100	72.642	ENSSMAG00000011935	rbm42	100	70.093	Scophthalmus_maximus
ENSELUG00000022403	rbm42	100	72.512	ENSSDUG00000004033	rbm42	100	72.577	Seriola_dumerili
ENSELUG00000022403	rbm42	100	63.744	ENSSLDG00000009918	rbm42	100	79.070	Seriola_lalandi_dorsalis
ENSELUG00000022403	rbm42	100	72.170	ENSSPAG00000019871	rbm42	100	72.235	Stegastes_partitus
ENSELUG00000022403	rbm42	100	67.619	ENSTRUG00000024586	-	76	65.871	Takifugu_rubripes
ENSELUG00000022403	rbm42	99	57.837	ENSTNIG00000011669	rbm42	100	58.333	Tetraodon_nigroviridis
ENSELUG00000022403	rbm42	100	55.506	ENSXETG00000017599	rbm42	100	56.854	Xenopus_tropicalis
ENSELUG00000022403	rbm42	100	68.246	ENSXMAG00000012827	rbm42	100	68.396	Xiphophorus_maculatus