EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000022533 (Gene tree)
Gene ID: -
Gene Symbol: arf1
Alias: wu:fb33e02|wu:fb78h01
Full Name: ADP ribosylation factor 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 3676 bases
Position: chrLG03:17501809-17505484
Accession: 105019712
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000041613	MMR_HSR1	PF01926.23	3.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000042798	-	1376	XM_010886092	ENSELUP00000041613	228 (aa)	XP_010884394	-

Gene Model

Click here to download ENSELUG00000022533's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000022533's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000022533	arf1	77	72.881	ENSELUG00000014428	arf4	98	72.881
ENSELUG00000022533	arf1	79	95.580	ENSELUG00000019848	arf2a	100	95.580
ENSELUG00000022533	arf1	62	30.556	ENSELUG00000024279	sar1ab	73	30.556
ENSELUG00000022533	arf1	75	46.067	ENSELUG00000015699	arl4ca	91	46.067
ENSELUG00000022533	arf1	77	47.727	ENSELUG00000016864	arl5c	98	47.727
ENSELUG00000022533	arf1	75	40.116	ENSELUG00000013130	-	95	40.116
ENSELUG00000022533	arf1	73	42.105	ENSELUG00000002496	-	92	42.105
ENSELUG00000022533	arf1	62	31.469	ENSELUG00000020912	sar1b	61	31.469
ENSELUG00000022533	arf1	79	93.923	ENSELUG00000008395	ARF3	100	93.923
ENSELUG00000022533	arf1	69	44.048	ENSELUG00000023460	-	90	43.386
ENSELUG00000022533	arf1	78	44.565	ENSELUG00000024060	-	65	44.565
ENSELUG00000022533	arf1	74	42.941	ENSELUG00000000140	arl11	94	42.941
ENSELUG00000022533	arf1	78	58.659	ENSELUG00000001287	-	99	58.659
ENSELUG00000022533	arf1	50	30.081	ENSELUG00000023815	-	58	30.081
ENSELUG00000022533	arf1	67	32.692	ENSELUG00000011113	-	69	32.692
ENSELUG00000022533	arf1	78	49.153	ENSELUG00000007052	arl5a	99	49.153
ENSELUG00000022533	arf1	79	58.011	ENSELUG00000018440	arl1	100	58.011
ENSELUG00000022533	arf1	59	72.593	ENSELUG00000000436	-	85	72.593
ENSELUG00000022533	arf1	75	44.767	ENSELUG00000018031	arl3	92	44.767
ENSELUG00000022533	arf1	77	49.143	ENSELUG00000022956	arl8	98	49.704
ENSELUG00000022533	arf1	75	47.753	ENSELUG00000004400	arl4cb	91	47.753
ENSELUG00000022533	arf1	75	30.460	ENSELUG00000010736	arl8a	93	30.460
ENSELUG00000022533	arf1	71	48.780	ENSELUG00000016704	arl2	89	48.780
ENSELUG00000022533	arf1	73	38.462	ENSELUG00000000269	ARL6	92	40.110
ENSELUG00000022533	arf1	74	32.941	ENSELUG00000009390	arl8ba	91	32.941
ENSELUG00000022533	arf1	79	83.333	ENSELUG00000019582	-	100	83.333
ENSELUG00000022533	arf1	78	43.820	ENSELUG00000016208	arl3l2	95	43.820
ENSELUG00000022533	arf1	79	95.028	ENSELUG00000007225	-	100	95.028
ENSELUG00000022533	arf1	75	35.519	ENSELUG00000013412	arfrp1	91	35.519
ENSELUG00000022533	arf1	75	45.349	ENSELUG00000003904	arl3l1	91	45.349
ENSELUG00000022533	arf1	74	32.353	ENSELUG00000003984	arl8bb	70	32.353

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000022533	arf1	79	94.475	ENSACIG00000012192	-	100	94.475	Amphilophus_citrinellus
ENSELUG00000022533	arf1	66	93.421	ENSAOCG00000001275	-	88	93.421	Amphiprion_ocellaris
ENSELUG00000022533	arf1	79	93.370	ENSAPEG00000016909	-	100	93.370	Amphiprion_percula
ENSELUG00000022533	arf1	79	94.475	ENSATEG00000003174	-	100	94.475	Anabas_testudineus
ENSELUG00000022533	arf1	79	93.370	ENSACLG00000004123	-	100	93.370	Astatotilapia_calliptera
ENSELUG00000022533	arf1	79	98.889	ENSAMXG00000019845	arf1	100	98.889	Astyanax_mexicanus
ENSELUG00000022533	arf1	79	93.370	ENSCVAG00000013374	-	100	93.370	Cyprinodon_variegatus
ENSELUG00000022533	arf1	79	98.333	ENSDARG00000009484	arf1	100	98.333	Danio_rerio
ENSELUG00000022533	arf1	79	92.818	ENSFHEG00000005859	-	100	92.818	Fundulus_heteroclitus
ENSELUG00000022533	arf1	76	90.751	ENSGMOG00000000429	arf1	95	90.751	Gadus_morhua
ENSELUG00000022533	arf1	79	93.370	ENSGAFG00000018151	-	100	93.370	Gambusia_affinis
ENSELUG00000022533	arf1	79	85.000	ENSGACG00000014195	-	97	85.000	Gasterosteus_aculeatus
ENSELUG00000022533	arf1	79	93.370	ENSHBUG00000002636	-	100	93.370	Haplochromis_burtoni
ENSELUG00000022533	arf1	79	97.778	ENSIPUG00000006311	arf1	100	97.778	Ictalurus_punctatus
ENSELUG00000022533	arf1	79	93.923	ENSKMAG00000018315	-	100	93.923	Kryptolebias_marmoratus
ENSELUG00000022533	arf1	79	90.503	ENSLBEG00000001998	arf1	100	90.503	Labrus_bergylta
ENSELUG00000022533	arf1	79	87.845	ENSLBEG00000023263	-	100	87.845	Labrus_bergylta
ENSELUG00000022533	arf1	79	93.923	ENSMAMG00000001553	-	100	93.923	Mastacembelus_armatus
ENSELUG00000022533	arf1	80	92.391	ENSMZEG00005022594	-	100	93.370	Maylandia_zebra
ENSELUG00000022533	arf1	79	95.028	ENSMALG00000004269	-	100	95.028	Monopterus_albus
ENSELUG00000022533	arf1	79	93.370	ENSNBRG00000016455	-	100	93.370	Neolamprologus_brichardi
ENSELUG00000022533	arf1	79	93.370	ENSONIG00000001286	-	100	93.370	Oreochromis_niloticus
ENSELUG00000022533	arf1	79	94.475	ENSORLG00000023270	-	100	94.475	Oryzias_latipes
ENSELUG00000022533	arf1	79	93.923	ENSORLG00020006712	-	100	93.923	Oryzias_latipes_hni
ENSELUG00000022533	arf1	79	94.475	ENSORLG00015019836	-	100	94.475	Oryzias_latipes_hsok
ENSELUG00000022533	arf1	79	94.475	ENSOMEG00000023784	-	100	94.475	Oryzias_melastigma
ENSELUG00000022533	arf1	79	91.111	ENSPMGG00000014174	arf1	100	91.111	Periophthalmus_magnuspinnatus
ENSELUG00000022533	arf1	79	94.444	ENSPMAG00000002035	arf1	100	94.444	Petromyzon_marinus
ENSELUG00000022533	arf1	79	93.370	ENSPFOG00000014787	-	100	93.370	Poecilia_formosa
ENSELUG00000022533	arf1	79	93.370	ENSPLAG00000001041	-	100	93.370	Poecilia_latipinna
ENSELUG00000022533	arf1	79	93.370	ENSPMEG00000024077	-	100	93.370	Poecilia_mexicana
ENSELUG00000022533	arf1	79	93.370	ENSPREG00000009009	-	100	93.370	Poecilia_reticulata
ENSELUG00000022533	arf1	79	93.370	ENSPNYG00000009472	-	100	93.370	Pundamilia_nyererei
ENSELUG00000022533	arf1	75	100.000	ENSPNAG00000000098	arf1	94	100.000	Pygocentrus_nattereri
ENSELUG00000022533	arf1	77	79.213	YDL192W	-	98	79.213	Saccharomyces_cerevisiae
ENSELUG00000022533	arf1	79	77.222	YDL137W	-	99	77.222	Saccharomyces_cerevisiae
ENSELUG00000022533	arf1	79	86.667	ENSSMAG00000006125	-	100	86.667	Scophthalmus_maximus
ENSELUG00000022533	arf1	80	92.935	ENSSDUG00000017356	-	100	93.370	Seriola_dumerili
ENSELUG00000022533	arf1	79	93.370	ENSSLDG00000008504	-	100	93.370	Seriola_lalandi_dorsalis
ENSELUG00000022533	arf1	82	92.021	ENSSPAG00000011431	-	100	94.475	Stegastes_partitus
ENSELUG00000022533	arf1	79	95.580	ENSTRUG00000019870	-	100	95.580	Takifugu_rubripes
ENSELUG00000022533	arf1	79	93.923	ENSTNIG00000011685	-	100	93.923	Tetraodon_nigroviridis
ENSELUG00000022533	arf1	79	93.370	ENSXCOG00000016687	-	98	93.370	Xiphophorus_couchianus
ENSELUG00000022533	arf1	79	93.370	ENSXMAG00000009193	-	100	93.370	Xiphophorus_maculatus