EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000022538 (Gene tree)
Gene ID: 105028270
Gene Symbol: -
Alias: -
Full Name: probable ATP-dependent RNA helicase ddx6
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 37096 bases
Position: chrAZJR03000848.1:236929-274024
Accession: 105028270
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000041606	DEAD	PF00270.29	1.6e-40	1	1
ENSELUP00000023658	DEAD	PF00270.29	3.9e-25	1	2
ENSELUP00000023658	DEAD	PF00270.29	3.9e-25	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000034938	-	6678	XM_010900885	ENSELUP00000041606	492 (aa)	XP_010899187	UPI000576F7C3
ENSELUT00000034893	-	1296	-	ENSELUP00000023658	431 (aa)	-	-

Gene Model

Click here to download ENSELUG00000022538's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000022538's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000022538	-	75	38.441	ENSELUG00000009963	eif4a1b	91	38.441
ENSELUG00000022538	-	76	30.612	ENSELUG00000007424	DDX5	65	30.612
ENSELUG00000022538	-	76	31.343	ENSELUG00000004613	-	60	30.769
ENSELUG00000022538	-	66	31.594	ENSELUG00000002616	ddx55	57	31.594
ENSELUG00000022538	-	69	31.534	ENSELUG00000024602	-	54	31.534
ENSELUG00000022538	-	74	35.620	ENSELUG00000000838	-	77	34.897
ENSELUG00000022538	-	68	40.984	ENSELUG00000017328	ddx4	57	32.075
ENSELUG00000022538	-	80	30.732	ENSELUG00000009495	ddx47	77	30.732
ENSELUG00000022538	-	75	30.193	ENSELUG00000015358	ddx23	54	30.193
ENSELUG00000022538	-	79	30.250	ENSELUG00000012963	ddx49	83	30.250
ENSELUG00000022538	-	68	30.636	ENSELUG00000008640	ddx18	51	30.636
ENSELUG00000022538	-	71	31.579	ENSELUG00000001184	-	54	31.944
ENSELUG00000022538	-	96	79.918	ENSELUG00000022660	ddx6	98	80.533
ENSELUG00000022538	-	76	37.037	ENSELUG00000018528	eif4a3	92	37.037
ENSELUG00000022538	-	77	36.458	ENSELUG00000017904	ddx39b	90	36.364
ENSELUG00000022538	-	66	49.020	ENSELUG00000006743	ddx1	53	49.020
ENSELUG00000022538	-	79	34.336	ENSELUG00000010260	ddx20	50	34.336
ENSELUG00000022538	-	68	31.594	ENSELUG00000012126	ddx43	52	31.594
ENSELUG00000022538	-	78	30.976	ENSELUG00000023518	-	60	30.353
ENSELUG00000022538	-	75	38.978	ENSELUG00000023923	eif4a2	99	39.071
ENSELUG00000022538	-	80	36.250	ENSELUG00000010581	DDX39A	94	36.250
ENSELUG00000022538	-	98	89.876	ENSELUG00000020545	ddx61	98	89.876
ENSELUG00000022538	-	70	38.983	ENSELUG00000005585	ddx59	57	31.300
ENSELUG00000022538	-	79	36.111	ENSELUG00000006779	-	85	36.111
ENSELUG00000022538	-	70	37.500	ENSELUG00000004740	zgc:193690	80	38.172

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000022538	-	98	85.270	ENSAPOG00000014829	ddx61	98	85.270	Acanthochromis_polyacanthus
ENSELUG00000022538	-	76	94.086	ENSAPOG00000023627	-	94	94.086	Acanthochromis_polyacanthus
ENSELUG00000022538	-	99	83.027	ENSACIG00000018355	-	99	83.027	Amphilophus_citrinellus
ENSELUG00000022538	-	99	88.462	ENSAOCG00000006269	-	99	88.866	Amphiprion_ocellaris
ENSELUG00000022538	-	98	86.071	ENSAOCG00000007627	ddx61	98	86.071	Amphiprion_ocellaris
ENSELUG00000022538	-	99	88.462	ENSAPEG00000021368	-	99	88.866	Amphiprion_percula
ENSELUG00000022538	-	99	88.462	ENSAPEG00000020642	-	99	88.866	Amphiprion_percula
ENSELUG00000022538	-	98	86.071	ENSAPEG00000007293	ddx61	98	86.071	Amphiprion_percula
ENSELUG00000022538	-	98	85.537	ENSATEG00000011302	ddx61	99	86.316	Anabas_testudineus
ENSELUG00000022538	-	99	88.367	ENSATEG00000005424	-	99	88.367	Anabas_testudineus
ENSELUG00000022538	-	99	89.775	ENSACLG00000003260	-	99	89.775	Astatotilapia_calliptera
ENSELUG00000022538	-	96	86.498	ENSACLG00000027620	ddx61	98	86.498	Astatotilapia_calliptera
ENSELUG00000022538	-	97	86.975	ENSAMXG00000032542	ddx61	98	86.515	Astyanax_mexicanus
ENSELUG00000022538	-	98	89.485	ENSAMXG00000033980	-	98	89.485	Astyanax_mexicanus
ENSELUG00000022538	-	99	90.000	ENSCSEG00000009893	-	99	90.000	Cynoglossus_semilaevis
ENSELUG00000022538	-	99	88.344	ENSCVAG00000011006	-	99	88.344	Cyprinodon_variegatus
ENSELUG00000022538	-	100	86.004	ENSDARG00000018425	ddx61	99	86.004	Danio_rerio
ENSELUG00000022538	-	99	89.344	ENSFHEG00000015487	-	99	89.344	Fundulus_heteroclitus
ENSELUG00000022538	-	96	87.759	ENSGMOG00000013762	ddx61	99	86.885	Gadus_morhua
ENSELUG00000022538	-	66	87.462	ENSGMOG00000003561	-	100	87.462	Gadus_morhua
ENSELUG00000022538	-	98	88.843	ENSGAFG00000015865	-	98	88.843	Gambusia_affinis
ENSELUG00000022538	-	98	89.813	ENSGACG00000002413	-	99	90.456	Gasterosteus_aculeatus
ENSELUG00000022538	-	98	84.929	ENSGACG00000003401	ddx61	100	84.929	Gasterosteus_aculeatus
ENSELUG00000022538	-	96	86.709	ENSHBUG00000017832	ddx61	98	86.709	Haplochromis_burtoni
ENSELUG00000022538	-	99	89.775	ENSHBUG00000017033	-	99	89.775	Haplochromis_burtoni
ENSELUG00000022538	-	99	87.755	ENSHCOG00000012238	-	99	87.755	Hippocampus_comes
ENSELUG00000022538	-	96	83.686	ENSHCOG00000008184	ddx61	96	83.686	Hippocampus_comes
ENSELUG00000022538	-	96	84.842	ENSIPUG00000012823	DDX6	99	83.851	Ictalurus_punctatus
ENSELUG00000022538	-	98	87.371	ENSIPUG00000008367	-	99	86.831	Ictalurus_punctatus
ENSELUG00000022538	-	98	90.041	ENSKMAG00000007213	-	98	90.041	Kryptolebias_marmoratus
ENSELUG00000022538	-	99	88.554	ENSLBEG00000016890	-	99	88.755	Labrus_bergylta
ENSELUG00000022538	-	97	86.722	ENSLBEG00000001740	ddx61	98	86.722	Labrus_bergylta
ENSELUG00000022538	-	97	83.542	ENSLACG00000015214	ddx61	99	83.542	Latimeria_chalumnae
ENSELUG00000022538	-	96	49.260	ENSLOCG00000004352	ddx61	94	49.683	Lepisosteus_oculatus
ENSELUG00000022538	-	99	84.787	ENSMAMG00000005321	ddx61	99	84.787	Mastacembelus_armatus
ENSELUG00000022538	-	99	89.206	ENSMAMG00000005559	-	99	89.206	Mastacembelus_armatus
ENSELUG00000022538	-	96	86.709	ENSMZEG00005003556	ddx61	98	86.709	Maylandia_zebra
ENSELUG00000022538	-	99	89.775	ENSMZEG00005026268	-	99	89.775	Maylandia_zebra
ENSELUG00000022538	-	96	84.454	ENSMMOG00000007415	ddx61	97	84.454	Mola_mola
ENSELUG00000022538	-	72	76.487	ENSMMOG00000008825	-	99	71.186	Mola_mola
ENSELUG00000022538	-	99	88.558	ENSMMOG00000013694	-	99	88.558	Mola_mola
ENSELUG00000022538	-	99	73.523	ENSMALG00000013776	ddx61	98	73.523	Monopterus_albus
ENSELUG00000022538	-	99	88.571	ENSMALG00000013817	-	99	88.571	Monopterus_albus
ENSELUG00000022538	-	99	83.231	ENSNBRG00000015075	-	99	83.231	Neolamprologus_brichardi
ENSELUG00000022538	-	96	79.747	ENSNBRG00000015800	ddx61	98	79.747	Neolamprologus_brichardi
ENSELUG00000022538	-	99	89.980	ENSONIG00000013748	-	99	89.980	Oreochromis_niloticus
ENSELUG00000022538	-	96	86.709	ENSONIG00000011418	ddx61	98	86.709	Oreochromis_niloticus
ENSELUG00000022538	-	98	88.589	ENSORLG00000009178	-	98	88.589	Oryzias_latipes
ENSELUG00000022538	-	98	88.797	ENSORLG00020015515	-	98	88.797	Oryzias_latipes_hni
ENSELUG00000022538	-	99	88.548	ENSORLG00015006764	-	99	88.548	Oryzias_latipes_hsok
ENSELUG00000022538	-	95	89.549	ENSOMEG00000022326	-	98	89.549	Oryzias_melastigma
ENSELUG00000022538	-	97	92.017	ENSPKIG00000024264	ddx61	99	90.389	Paramormyrops_kingsleyae
ENSELUG00000022538	-	98	83.333	ENSPMGG00000013355	-	98	83.333	Periophthalmus_magnuspinnatus
ENSELUG00000022538	-	99	88.548	ENSPFOG00000005750	-	99	88.548	Poecilia_formosa
ENSELUG00000022538	-	99	88.548	ENSPLAG00000000403	-	99	88.548	Poecilia_latipinna
ENSELUG00000022538	-	98	89.813	ENSPMEG00000023737	-	98	89.813	Poecilia_mexicana
ENSELUG00000022538	-	96	80.431	ENSPNYG00000015045	ddx61	98	80.431	Pundamilia_nyererei
ENSELUG00000022538	-	99	89.775	ENSPNYG00000003986	-	99	89.775	Pundamilia_nyererei
ENSELUG00000022538	-	98	86.515	ENSPNAG00000024072	ddx61	99	86.515	Pygocentrus_nattereri
ENSELUG00000022538	-	99	89.184	ENSPNAG00000008742	-	99	89.184	Pygocentrus_nattereri
ENSELUG00000022538	-	96	89.241	ENSSFOG00015021404	ddx61	99	87.347	Scleropages_formosus
ENSELUG00000022538	-	96	86.441	ENSSMAG00000006591	ddx61	97	85.924	Scophthalmus_maximus
ENSELUG00000022538	-	99	90.612	ENSSMAG00000001793	-	99	90.612	Scophthalmus_maximus
ENSELUG00000022538	-	96	88.211	ENSSDUG00000009713	ddx61	98	87.164	Seriola_dumerili
ENSELUG00000022538	-	99	90.020	ENSSDUG00000007530	-	99	90.020	Seriola_dumerili
ENSELUG00000022538	-	99	90.020	ENSSLDG00000007608	-	99	90.020	Seriola_lalandi_dorsalis
ENSELUG00000022538	-	96	87.789	ENSSLDG00000000132	ddx61	98	86.749	Seriola_lalandi_dorsalis
ENSELUG00000022538	-	99	89.796	ENSSPAG00000013878	-	99	89.810	Stegastes_partitus
ENSELUG00000022538	-	96	88.136	ENSSPAG00000001578	ddx61	98	87.110	Stegastes_partitus
ENSELUG00000022538	-	99	86.922	ENSTRUG00000012432	-	99	88.367	Takifugu_rubripes
ENSELUG00000022538	-	98	89.397	ENSTNIG00000003560	-	99	89.397	Tetraodon_nigroviridis
ENSELUG00000022538	-	98	88.235	ENSXCOG00000001406	-	98	88.235	Xiphophorus_couchianus
ENSELUG00000022538	-	98	89.256	ENSXMAG00000016090	-	98	89.256	Xiphophorus_maculatus