EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSELUG00000022578 (Gene tree)
Gene ID: 105024845
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 7813 bases
Position: chrLG13:11473434-11481246
Accession: 105024845
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000023714	PRP21_like_P	PF12230.8	2.3e-52	1	1
ENSELUP00000041625	PRP21_like_P	PF12230.8	2.5e-52	1	1
ENSELUP00000023714	Surp	PF01805.20	7.8e-46	1	2
ENSELUP00000023714	Surp	PF01805.20	7.8e-46	2	2
ENSELUP00000041625	Surp	PF01805.20	8e-46	1	2
ENSELUP00000041625	Surp	PF01805.20	8e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000034934	-	2885	-	ENSELUP00000023714	765 (aa)	-	-
ENSELUT00000035008	-	3091	XM_013136658	ENSELUP00000041625	787 (aa)	XP_012992112	UPI000577C5DB

Gene Model

Click here to download ENSELUG00000022578's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000022578's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000022578	sf3a1	97	83.464	ENSG00000099995	SF3A1	100	82.331	Homo_sapiens
ENSELUG00000022578	sf3a1	100	87.199	ENSAPOG00000020465	sf3a1	100	87.706	Acanthochromis_polyacanthus
ENSELUG00000022578	sf3a1	97	83.225	ENSAMEG00000007737	SF3A1	100	82.000	Ailuropoda_melanoleuca
ENSELUG00000022578	sf3a1	100	87.199	ENSACIG00000020672	sf3a1	100	87.326	Amphilophus_citrinellus
ENSELUG00000022578	sf3a1	100	86.946	ENSAOCG00000003060	sf3a1	100	87.452	Amphiprion_ocellaris
ENSELUG00000022578	sf3a1	100	86.946	ENSAPEG00000010735	sf3a1	100	87.452	Amphiprion_percula
ENSELUG00000022578	sf3a1	99	86.166	ENSATEG00000021201	sf3a1	96	87.370	Anabas_testudineus
ENSELUG00000022578	sf3a1	96	82.176	ENSAPLG00000009057	SF3A1	100	81.552	Anas_platyrhynchos
ENSELUG00000022578	sf3a1	100	77.654	ENSACAG00000009415	SF3A1	100	79.531	Anolis_carolinensis
ENSELUG00000022578	sf3a1	97	83.854	ENSANAG00000032045	SF3A1	100	82.331	Aotus_nancymaae
ENSELUG00000022578	sf3a1	100	86.439	ENSACLG00000012622	sf3a1	100	86.439	Astatotilapia_calliptera
ENSELUG00000022578	sf3a1	99	86.548	ENSAMXG00000005382	sf3a1	99	86.294	Astyanax_mexicanus
ENSELUG00000022578	sf3a1	98	82.821	ENSBTAG00000003390	SF3A1	100	82.456	Bos_taurus
ENSELUG00000022578	sf3a1	80	46.124	WBGene00004188	prp-21	98	42.517	Caenorhabditis_elegans
ENSELUG00000022578	sf3a1	97	83.984	ENSCJAG00000010370	SF3A1	100	82.456	Callithrix_jacchus
ENSELUG00000022578	sf3a1	98	82.458	ENSCAFG00000012559	SF3A1	100	82.206	Canis_familiaris
ENSELUG00000022578	sf3a1	98	82.458	ENSCAFG00020000838	SF3A1	100	82.206	Canis_lupus_dingo
ENSELUG00000022578	sf3a1	98	82.821	ENSCHIG00000018642	SF3A1	100	82.456	Capra_hircus
ENSELUG00000022578	sf3a1	97	83.464	ENSTSYG00000004739	SF3A1	100	82.331	Carlito_syrichta
ENSELUG00000022578	sf3a1	94	68.044	ENSCAPG00000015414	SF3A1	97	67.204	Cavia_aperea
ENSELUG00000022578	sf3a1	98	82.821	ENSCPOG00000014589	SF3A1	100	82.456	Cavia_porcellus
ENSELUG00000022578	sf3a1	97	83.854	ENSCCAG00000032006	SF3A1	100	82.331	Cebus_capucinus
ENSELUG00000022578	sf3a1	98	82.692	ENSCATG00000029241	SF3A1	100	82.331	Cercocebus_atys
ENSELUG00000022578	sf3a1	97	83.333	ENSCLAG00000006508	SF3A1	100	82.206	Chinchilla_lanigera
ENSELUG00000022578	sf3a1	98	82.692	ENSCSAG00000009470	SF3A1	100	82.331	Chlorocebus_sabaeus
ENSELUG00000022578	sf3a1	59	90.840	ENSCHOG00000005201	SF3A1	64	90.840	Choloepus_hoffmanni
ENSELUG00000022578	sf3a1	100	80.528	ENSCPBG00000007595	SF3A1	100	81.533	Chrysemys_picta_bellii
ENSELUG00000022578	sf3a1	98	52.345	ENSCING00000008526	-	98	51.899	Ciona_intestinalis
ENSELUG00000022578	sf3a1	97	50.000	ENSCSAVG00000005608	-	99	63.393	Ciona_savignyi
ENSELUG00000022578	sf3a1	98	82.692	ENSCANG00000033564	SF3A1	100	82.331	Colobus_angolensis_palliatus
ENSELUG00000022578	sf3a1	97	83.486	ENSCGRG00001008933	Sf3a1	100	82.080	Cricetulus_griseus_chok1gshd
ENSELUG00000022578	sf3a1	97	83.486	ENSCGRG00000006127	Sf3a1	100	82.080	Cricetulus_griseus_crigri
ENSELUG00000022578	sf3a1	100	85.588	ENSCSEG00000010792	sf3a1	100	85.335	Cynoglossus_semilaevis
ENSELUG00000022578	sf3a1	100	86.439	ENSCVAG00000004560	sf3a1	100	85.425	Cyprinodon_variegatus
ENSELUG00000022578	sf3a1	100	83.459	ENSDARG00000041887	sf3a1	100	91.477	Danio_rerio
ENSELUG00000022578	sf3a1	97	83.485	ENSDNOG00000010629	SF3A1	100	82.103	Dasypus_novemcinctus
ENSELUG00000022578	sf3a1	98	83.077	ENSDORG00000005613	Sf3a1	100	82.456	Dipodomys_ordii
ENSELUG00000022578	sf3a1	79	61.205	FBgn0266917	Sf3a1	97	50.305	Drosophila_melanogaster
ENSELUG00000022578	sf3a1	88	81.994	ENSETEG00000017194	SF3A1	95	82.738	Echinops_telfairi
ENSELUG00000022578	sf3a1	97	68.045	ENSEBUG00000001285	sf3a1	95	69.000	Eptatretus_burgeri
ENSELUG00000022578	sf3a1	98	82.949	ENSEASG00005010254	SF3A1	100	82.581	Equus_asinus_asinus
ENSELUG00000022578	sf3a1	98	82.949	ENSECAG00000023962	SF3A1	100	82.581	Equus_caballus
ENSELUG00000022578	sf3a1	76	89.655	ENSEEUG00000003159	SF3A1	83	90.164	Erinaceus_europaeus
ENSELUG00000022578	sf3a1	98	82.971	ENSFCAG00000011932	SF3A1	100	82.456	Felis_catus
ENSELUG00000022578	sf3a1	96	80.683	ENSFALG00000006944	SF3A1	100	80.552	Ficedula_albicollis
ENSELUG00000022578	sf3a1	97	83.333	ENSFDAG00000009560	SF3A1	100	82.206	Fukomys_damarensis
ENSELUG00000022578	sf3a1	100	86.946	ENSFHEG00000010866	sf3a1	100	86.819	Fundulus_heteroclitus
ENSELUG00000022578	sf3a1	100	86.582	ENSGMOG00000016024	sf3a1	100	85.678	Gadus_morhua
ENSELUG00000022578	sf3a1	96	82.152	ENSGALG00000007937	SF3A1	100	81.179	Gallus_gallus
ENSELUG00000022578	sf3a1	100	87.452	ENSGAFG00000009111	sf3a1	100	86.565	Gambusia_affinis
ENSELUG00000022578	sf3a1	100	83.899	ENSGACG00000011893	sf3a1	100	84.654	Gasterosteus_aculeatus
ENSELUG00000022578	sf3a1	99	79.634	ENSGAGG00000000762	SF3A1	100	80.679	Gopherus_agassizii
ENSELUG00000022578	sf3a1	97	83.464	ENSGGOG00000012631	SF3A1	100	82.331	Gorilla_gorilla
ENSELUG00000022578	sf3a1	100	87.072	ENSHBUG00000015795	sf3a1	100	86.439	Haplochromis_burtoni
ENSELUG00000022578	sf3a1	98	82.821	ENSHGLG00000007907	SF3A1	100	82.456	Heterocephalus_glaber_female
ENSELUG00000022578	sf3a1	98	82.821	ENSHGLG00100013799	SF3A1	100	82.456	Heterocephalus_glaber_male
ENSELUG00000022578	sf3a1	100	84.918	ENSHCOG00000015423	sf3a1	100	83.650	Hippocampus_comes
ENSELUG00000022578	sf3a1	98	85.290	ENSIPUG00000002470	sf3a1	99	84.903	Ictalurus_punctatus
ENSELUG00000022578	sf3a1	98	83.355	ENSSTOG00000013892	SF3A1	100	82.581	Ictidomys_tridecemlineatus
ENSELUG00000022578	sf3a1	97	83.984	ENSJJAG00000022566	Sf3a1	100	82.353	Jaculus_jaculus
ENSELUG00000022578	sf3a1	100	86.312	ENSKMAG00000002400	sf3a1	100	85.932	Kryptolebias_marmoratus
ENSELUG00000022578	sf3a1	100	85.805	ENSLBEG00000022974	sf3a1	100	86.058	Labrus_bergylta
ENSELUG00000022578	sf3a1	100	82.174	ENSLACG00000003565	SF3A1	100	83.480	Latimeria_chalumnae
ENSELUG00000022578	sf3a1	100	85.372	ENSLOCG00000008251	sf3a1	99	85.372	Lepisosteus_oculatus
ENSELUG00000022578	sf3a1	98	82.714	ENSLAFG00000000448	SF3A1	100	82.456	Loxodonta_africana
ENSELUG00000022578	sf3a1	97	55.385	ENSLAFG00000026032	-	97	55.243	Loxodonta_africana
ENSELUG00000022578	sf3a1	98	83.077	ENSMFAG00000031979	SF3A1	100	82.206	Macaca_fascicularis
ENSELUG00000022578	sf3a1	98	83.077	ENSMMUG00000005547	SF3A1	100	82.206	Macaca_mulatta
ENSELUG00000022578	sf3a1	98	83.205	ENSMNEG00000037229	SF3A1	100	82.331	Macaca_nemestrina
ENSELUG00000022578	sf3a1	98	82.692	ENSMLEG00000041908	SF3A1	100	82.331	Mandrillus_leucophaeus
ENSELUG00000022578	sf3a1	98	87.824	ENSMAMG00000006460	sf3a1	96	87.435	Mastacembelus_armatus
ENSELUG00000022578	sf3a1	100	86.439	ENSMZEG00005009633	sf3a1	100	86.439	Maylandia_zebra
ENSELUG00000022578	sf3a1	96	82.152	ENSMGAG00000001330	SF3A1	99	82.277	Meleagris_gallopavo
ENSELUG00000022578	sf3a1	93	79.647	ENSMAUG00000020317	Sf3a1	100	76.419	Mesocricetus_auratus
ENSELUG00000022578	sf3a1	98	82.285	ENSMICG00000010038	SF3A1	100	81.932	Microcebus_murinus
ENSELUG00000022578	sf3a1	97	83.333	ENSMOCG00000008438	Sf3a1	100	82.206	Microtus_ochrogaster
ENSELUG00000022578	sf3a1	100	84.918	ENSMMOG00000015588	sf3a1	99	85.171	Mola_mola
ENSELUG00000022578	sf3a1	97	83.464	ENSMODG00000009270	SF3A1	100	82.434	Monodelphis_domestica
ENSELUG00000022578	sf3a1	100	87.611	ENSMALG00000000148	sf3a1	100	87.358	Monopterus_albus
ENSELUG00000022578	sf3a1	97	83.748	MGP_CAROLIEiJ_G0016029	Sf3a1	99	82.138	Mus_caroli
ENSELUG00000022578	sf3a1	97	83.748	ENSMUSG00000002129	Sf3a1	99	82.138	Mus_musculus
ENSELUG00000022578	sf3a1	97	83.748	MGP_PahariEiJ_G0016862	Sf3a1	99	82.138	Mus_pahari
ENSELUG00000022578	sf3a1	97	83.748	MGP_SPRETEiJ_G0016870	Sf3a1	99	82.138	Mus_spretus
ENSELUG00000022578	sf3a1	98	82.971	ENSMPUG00000013144	SF3A1	100	82.331	Mustela_putorius_furo
ENSELUG00000022578	sf3a1	98	83.205	ENSMLUG00000002139	SF3A1	100	82.581	Myotis_lucifugus
ENSELUG00000022578	sf3a1	99	82.420	ENSNGAG00000016977	Sf3a1	100	82.331	Nannospalax_galili
ENSELUG00000022578	sf3a1	100	86.726	ENSNBRG00000016642	sf3a1	100	86.094	Neolamprologus_brichardi
ENSELUG00000022578	sf3a1	98	82.692	ENSNLEG00000003686	SF3A1	100	82.331	Nomascus_leucogenys
ENSELUG00000022578	sf3a1	97	74.297	ENSMEUG00000008741	SF3A1	100	74.084	Notamacropus_eugenii
ENSELUG00000022578	sf3a1	97	84.375	ENSOPRG00000016636	SF3A1	100	82.581	Ochotona_princeps
ENSELUG00000022578	sf3a1	97	83.333	ENSODEG00000002571	SF3A1	100	82.309	Octodon_degus
ENSELUG00000022578	sf3a1	100	85.298	ENSONIG00000010848	sf3a1	100	86.058	Oreochromis_niloticus
ENSELUG00000022578	sf3a1	97	83.333	ENSOCUG00000007633	SF3A1	100	82.080	Oryctolagus_cuniculus
ENSELUG00000022578	sf3a1	99	86.658	ENSORLG00000013050	sf3a1	99	85.733	Oryzias_latipes
ENSELUG00000022578	sf3a1	99	86.922	ENSORLG00020003236	sf3a1	95	85.997	Oryzias_latipes_hni
ENSELUG00000022578	sf3a1	100	86.692	ENSORLG00015017411	sf3a1	100	86.058	Oryzias_latipes_hsok
ENSELUG00000022578	sf3a1	100	87.452	ENSOMEG00000013362	sf3a1	100	86.312	Oryzias_melastigma
ENSELUG00000022578	sf3a1	97	83.203	ENSOGAG00000012931	SF3A1	100	82.080	Otolemur_garnettii
ENSELUG00000022578	sf3a1	98	81.667	ENSOARG00000006849	SF3A1	100	80.952	Ovis_aries
ENSELUG00000022578	sf3a1	97	82.552	ENSPPAG00000041790	SF3A1	100	81.454	Pan_paniscus
ENSELUG00000022578	sf3a1	98	82.971	ENSPPRG00000004391	SF3A1	100	82.456	Panthera_pardus
ENSELUG00000022578	sf3a1	97	83.615	ENSPTIG00000000844	SF3A1	99	83.854	Panthera_tigris_altaica
ENSELUG00000022578	sf3a1	97	83.464	ENSPTRG00000014240	SF3A1	100	82.331	Pan_troglodytes
ENSELUG00000022578	sf3a1	98	82.692	ENSPANG00000020772	SF3A1	100	82.331	Papio_anubis
ENSELUG00000022578	sf3a1	78	90.110	ENSPSIG00000012803	SF3A1	99	90.110	Pelodiscus_sinensis
ENSELUG00000022578	sf3a1	97	83.333	ENSPMGG00000023096	sf3a1	100	84.766	Periophthalmus_magnuspinnatus
ENSELUG00000022578	sf3a1	97	83.617	ENSPEMG00000009494	Sf3a1	100	82.206	Peromyscus_maniculatus_bairdii
ENSELUG00000022578	sf3a1	71	76.993	ENSPMAG00000007139	-	100	73.623	Petromyzon_marinus
ENSELUG00000022578	sf3a1	99	82.821	ENSPCIG00000022692	SF3A1	100	82.434	Phascolarctos_cinereus
ENSELUG00000022578	sf3a1	100	77.665	ENSPFOG00000016768	sf3a1	100	76.806	Poecilia_formosa
ENSELUG00000022578	sf3a1	100	87.706	ENSPLAG00000017268	sf3a1	100	86.835	Poecilia_latipinna
ENSELUG00000022578	sf3a1	96	86.807	ENSPMEG00000019811	sf3a1	100	85.757	Poecilia_mexicana
ENSELUG00000022578	sf3a1	100	87.706	ENSPREG00000010347	sf3a1	100	86.819	Poecilia_reticulata
ENSELUG00000022578	sf3a1	98	82.692	ENSPPYG00000011707	SF3A1	100	82.331	Pongo_abelii
ENSELUG00000022578	sf3a1	58	82.305	ENSPCAG00000003266	SF3A1	57	82.716	Procavia_capensis
ENSELUG00000022578	sf3a1	98	82.542	ENSPCOG00000026630	SF3A1	100	82.183	Propithecus_coquereli
ENSELUG00000022578	sf3a1	95	83.200	ENSPVAG00000017719	SF3A1	94	83.467	Pteropus_vampyrus
ENSELUG00000022578	sf3a1	100	86.946	ENSPNYG00000018706	sf3a1	100	86.312	Pundamilia_nyererei
ENSELUG00000022578	sf3a1	99	86.802	ENSPNAG00000003721	sf3a1	99	86.294	Pygocentrus_nattereri
ENSELUG00000022578	sf3a1	99	82.519	ENSRNOG00000005218	Sf3a1	99	82.013	Rattus_norvegicus
ENSELUG00000022578	sf3a1	98	82.692	ENSRBIG00000032167	SF3A1	100	82.331	Rhinopithecus_bieti
ENSELUG00000022578	sf3a1	98	82.692	ENSRROG00000044908	SF3A1	100	82.331	Rhinopithecus_roxellana
ENSELUG00000022578	sf3a1	94	83.740	ENSSBOG00000021960	SF3A1	98	83.756	Saimiri_boliviensis_boliviensis
ENSELUG00000022578	sf3a1	97	80.859	ENSSHAG00000003666	SF3A1	97	81.380	Sarcophilus_harrisii
ENSELUG00000022578	sf3a1	100	86.776	ENSSFOG00015004579	sf3a1	100	87.154	Scleropages_formosus
ENSELUG00000022578	sf3a1	100	83.777	ENSSMAG00000004275	sf3a1	100	82.636	Scophthalmus_maximus
ENSELUG00000022578	sf3a1	100	88.340	ENSSDUG00000022219	sf3a1	100	86.819	Seriola_dumerili
ENSELUG00000022578	sf3a1	100	88.340	ENSSLDG00000012642	sf3a1	100	86.819	Seriola_lalandi_dorsalis
ENSELUG00000022578	sf3a1	97	80.990	ENSSARG00000005960	SF3A1	99	81.120	Sorex_araneus
ENSELUG00000022578	sf3a1	97	81.395	ENSSPUG00000018863	SF3A1	100	81.390	Sphenodon_punctatus
ENSELUG00000022578	sf3a1	100	86.819	ENSSPAG00000011856	sf3a1	100	86.819	Stegastes_partitus
ENSELUG00000022578	sf3a1	98	83.333	ENSSSCG00000010002	SF3A1	100	82.581	Sus_scrofa
ENSELUG00000022578	sf3a1	96	81.937	ENSTGUG00000010547	SF3A1	99	82.065	Taeniopygia_guttata
ENSELUG00000022578	sf3a1	82	84.640	ENSTRUG00000006118	sf3a1	100	84.010	Takifugu_rubripes
ENSELUG00000022578	sf3a1	62	81.852	ENSTNIG00000005713	sf3a1	89	86.607	Tetraodon_nigroviridis
ENSELUG00000022578	sf3a1	98	76.825	ENSTBEG00000012771	SF3A1	100	76.190	Tupaia_belangeri
ENSELUG00000022578	sf3a1	98	82.074	ENSTTRG00000001535	SF3A1	100	82.103	Tursiops_truncatus
ENSELUG00000022578	sf3a1	99	80.958	ENSUAMG00000006750	SF3A1	99	81.439	Ursus_americanus
ENSELUG00000022578	sf3a1	100	80.726	ENSUMAG00000016665	SF3A1	100	81.242	Ursus_maritimus
ENSELUG00000022578	sf3a1	98	82.458	ENSVVUG00000003075	SF3A1	100	82.206	Vulpes_vulpes
ENSELUG00000022578	sf3a1	100	76.990	ENSXETG00000016144	sf3a1	96	84.274	Xenopus_tropicalis
ENSELUG00000022578	sf3a1	100	86.819	ENSXCOG00000015653	sf3a1	100	85.932	Xiphophorus_couchianus
ENSELUG00000022578	sf3a1	100	87.072	ENSXMAG00000002753	sf3a1	100	86.185	Xiphophorus_maculatus